pycom111g00930

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0000326
Physical Location & Seq
Reverse (-)
605568 .. 606958
1391 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g00930.2

Sequence Viewer

Length: 1002 bp
ATGGGTCGAAGCAAATCAAAGTTACCTTTAGAGTTAATTCCTAACGAACGCTCACGTAAGGTTACTTTTCGAAAGAGAAGGAACGGATTGTTGAAGAAGGCAGTTGAATTGCACACACTTTGTGATGTGAAGGTGTGTACAATCGTTTACGAGAGGAAATCCAAGGGCAAAGTGAGCAGATTAGCGACGTTCCCTGAGGAATTTAAAGATGTCAAGGAAATAATTGATAAGTACAAATCAAATTCATCAAAGGTAAAGAATGTCCAAAGTTTGGGAGACTTCTACGCCACGCAAACGGTTCAAGTGAAGGAGGAGTTTGGGAAGCTACGCAGCAAGAGCTGTGAAGAGAAGTATCCTGCATGGGAAGATCGTCTCGATGCGTTTTCAGTAGAACAAATGCTCGACCTTTTGACAAATTTGGAGAACAAAATTGTAGATACTCATAAGATGCATGGCATGATGAAGGAATCAAAGCAAATTGTTGTGCAAGAGACAATACCACCAAAGGCCACGTTTGAAAGCAACCAAGAGTATTCTCAGATGCAATCTGCAAGCACATTCTGGGCTAATAACAACAACATTCAGTACACTTGTTCTTCAGCTACTACTTCCAACTCCAACATCAAAACATCTACGTGGGATATTCCTGCGCCATATGGAAATATGGATGGGAACTCAACCTTCTATAATCCCATGCAGCAGCAGCAGCAGCAGCAGCCATGCATGTACGACTCAATATTTTCAAGTGCTGCATCTCAACAACAACAAGAAGCAGTTGTTCCAAGTGTTGAAAACCCTAACACTATTGGCATTGTTCCGTTGAGCGTTTCGTACGATCAGCCAATGCTGTCGCTAACCATGCAGCCGAGTTATCTGGAATGTCCGATTTCAGCAAGTGCTTTTGGTTTGTCATCCGAATATGAACAACAGTTTGGTGCATTTCAATCACAGCACATGTTTTACGACAACGTATTCTTCGACAACATGGCGCATTTCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

334

Amino Acids

38.02

Weight (kDa)

6.27

Isoelectric Point (pI)

57.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 271
AcsI RAATTY 3 cut(s) 200, 241, 415
AcuI CTGAAG 1 cut(s) 582
AdeI CACNNNGTG 1 cut(s) 122
AfaI GTAC 5 cut(s) 139, 233, 587, 728, 833
AfiI CCNNNNNNNGG 1 cut(s) 271
AflIII ACRYGT 1 cut(s) 954
AgsI TTSAA 7 cut(s) 94, 107, 302, 518, 744, 791, 944
AjuI GAANNNNNNNTTGG 2 cut(s) 915, 947
AluBI AGCT 3 cut(s) 325, 339, 602
AluI AGCT 3 cut(s) 325, 339, 602
Alw26I GTCTC 3 cut(s) 270, 377, 485
AoxI GGCC 1 cut(s) 507
ApoI RAATTY 3 cut(s) 200, 241, 415
AspLEI GCGC 2 cut(s) 652, 991
AsuII TTCGAA 2 cut(s) 70, 996
AxyI CCTNAGG 1 cut(s) 195
BccI CCATC 1 cut(s) 662
BciVI GTATCC 1 cut(s) 363
BcoDI GTCTC 3 cut(s) 270, 377, 485
BfuI GTATCC 1 cut(s) 363
BmsI GCATC 4 cut(s) 367, 438, 531, 761
Bpu14I TTCGAA 2 cut(s) 70, 996
BsaAI YACGTR 2 cut(s) 56, 636
BsaJI CCNNGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse21I CCTNAGG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 2 cut(s) 673, 911
BseLI CCNNNNNNNGG 1 cut(s) 271
BseMII CTCAG 2 cut(s) 186, 551
BseRI GAGGAG 1 cut(s) 326
BshFI GGCC 1 cut(s) 509
BsiWI CGTACG 1 cut(s) 831
BslI CCNNNNNNNGG 1 cut(s) 271
BsmAI GTCTC 3 cut(s) 270, 377, 485
BsmBI CGTCTC 1 cut(s) 377
BsnI GGCC 1 cut(s) 509
Bsp119I TTCGAA 2 cut(s) 70, 996
Bsp1407I TGTACA 1 cut(s) 137
Bsp143I GATC 2 cut(s) 367, 835
BspANI GGCC 1 cut(s) 509
BspCNI CTCAG 2 cut(s) 187, 550
BspT104I TTCGAA 2 cut(s) 70, 996
BsrGI TGTACA 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 2 cut(s) 367, 835
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 2 cut(s) 298, 930
Bst6I CTCTTC 1 cut(s) 339
BstAUI TGTACA 1 cut(s) 137
BstBAI YACGTR 2 cut(s) 56, 636
BstBI TTCGAA 2 cut(s) 70, 996
BstC8I GCNNGC 1 cut(s) 553
BstDEI CTNAG 2 cut(s) 195, 537
BstF5I GGATG 2 cut(s) 673, 911
BstHHI GCGC 2 cut(s) 652, 991
BstKTI GATC 2 cut(s) 370, 838
BstMAI GTCTC 3 cut(s) 270, 377, 485
BstMBI GATC 2 cut(s) 367, 835
BstMWI GCNNNNNNNGC 8 cut(s) 174, 336, 703, 706, 709, 712, 715, 859
BstNSI RCATGY 2 cut(s) 727, 958
Bsu36I CCTNAGG 1 cut(s) 195
BsuI GTATCC 1 cut(s) 363
BsuRI GGCC 1 cut(s) 509
BtsCI GGATG 2 cut(s) 673, 911
Cac8I GCNNGC 1 cut(s) 553
CfoI GCGC 2 cut(s) 652, 991
Csp6I GTAC 5 cut(s) 138, 232, 586, 727, 832
CviAII CATG 9 cut(s) 360, 452, 457, 694, 720, 724, 859, 955, 985
CviJI RGCY 8 cut(s) 325, 339, 509, 566, 602, 718, 841, 865
CviKI_1 RGCY 8 cut(s) 325, 339, 509, 566, 602, 718, 841, 865
CviQI GTAC 5 cut(s) 138, 232, 586, 727, 832
DdeI CTNAG 2 cut(s) 195, 537
DpnI GATC 2 cut(s) 369, 837
DpnII GATC 2 cut(s) 367, 835
DraI TTTAAA 1 cut(s) 205
DraIII CACNNNGTG 1 cut(s) 122
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 582
Eco81I CCTNAGG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 162
EcoT22I ATGCAT 2 cut(s) 453, 725
ErhI CCWWGG 1 cut(s) 162
Esp3I CGTCTC 1 cut(s) 377
FaeI CATG 9 cut(s) 363, 455, 460, 697, 723, 727, 862, 958, 988
FatI CATG 9 cut(s) 359, 451, 456, 693, 719, 723, 858, 954, 984
FauNDI CATATG 1 cut(s) 655
FokI GGATG 2 cut(s) 680, 898
GlaI GCGC 2 cut(s) 651, 990
HaeIII GGCC 1 cut(s) 509
HhaI GCGC 2 cut(s) 652, 991
Hin1II CATG 9 cut(s) 363, 455, 460, 697, 723, 727, 862, 958, 988
Hin6I GCGC 2 cut(s) 650, 989
HinP1I GCGC 2 cut(s) 650, 989
HinfI GANTC 2 cut(s) 467, 731
Hpy166II GTNNAC 3 cut(s) 138, 148, 588
Hpy188I TCNGA 3 cut(s) 540, 885, 916
Hpy188III TCNNGA 2 cut(s) 374, 875
Hpy8I GTNNAC 3 cut(s) 138, 148, 588
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 6 cut(s) 72, 91, 124, 301, 457, 691
HpyCH4III ACNGT 2 cut(s) 298, 930
HpyCH4IV ACGT 5 cut(s) 55, 188, 512, 635, 969
HpyF10VI GCNNNNNNNGC 8 cut(s) 174, 336, 703, 706, 709, 712, 715, 859
HpyF3I CTNAG 2 cut(s) 195, 537
HpySE526I ACGT 5 cut(s) 55, 188, 512, 635, 969
Hsp92II CATG 9 cut(s) 363, 455, 460, 697, 723, 727, 862, 958, 988
HspAI GCGC 2 cut(s) 650, 989
Kzo9I GATC 2 cut(s) 367, 835
LpnPI CCDG 5 cut(s) 207, 369, 547, 660, 860
LweI GCATC 4 cut(s) 367, 438, 531, 761
MaeII ACGT 5 cut(s) 55, 188, 512, 635, 969
MaeIII GTNAC 2 cut(s) 21, 61
MalI GATC 2 cut(s) 369, 837
MboI GATC 2 cut(s) 367, 835
MboII GAAGA 5 cut(s) 106, 356, 377, 588, 967
MluCI AATT 8 cut(s) 36, 107, 200, 222, 241, 415, 429, 477
MlyI GAGTC 1 cut(s) 725
MmeI TCCRAC 2 cut(s) 636, 642
MnlI CCTC 3 cut(s) 147, 190, 304
Mph1103I ATGCAT 2 cut(s) 453, 725
MseI TTAA 2 cut(s) 35, 204
MslI CAYNNNNRTG 1 cut(s) 634
MwoI GCNNNNNNNGC 8 cut(s) 174, 336, 703, 706, 709, 712, 715, 859
NdeI CATATG 1 cut(s) 655
NdeII GATC 2 cut(s) 367, 835
NlaIII CATG 9 cut(s) 363, 455, 460, 697, 723, 727, 862, 958, 988
NmeAIII GCCGAG 1 cut(s) 891
NsiI ATGCAT 2 cut(s) 453, 725
NspI RCATGY 2 cut(s) 727, 958
NspV TTCGAA 2 cut(s) 70, 996
PciI ACATGT 1 cut(s) 954
PcsI WCGNNNNNNNCGW 1 cut(s) 975
PfeI GAWTC 1 cut(s) 467
Pfl23II CGTACG 1 cut(s) 831
PflMI CCANNNNNTGG 1 cut(s) 271
PleI GAGTC 1 cut(s) 725
PpsI GAGTC 1 cut(s) 725
Ppu21I YACGTR 2 cut(s) 56, 636
PscI ACATGT 1 cut(s) 954
PspLI CGTACG 1 cut(s) 831
RsaI GTAC 5 cut(s) 139, 233, 587, 728, 833
RsaNI GTAC 5 cut(s) 138, 232, 586, 727, 832
RseI CAYNNNNRTG 1 cut(s) 634
SaqAI TTAA 2 cut(s) 35, 204
Sau3AI GATC 2 cut(s) 367, 835
SchI GAGTC 1 cut(s) 725
SfaNI GCATC 4 cut(s) 367, 438, 531, 761
SfuI TTCGAA 2 cut(s) 70, 996
SmiMI CAYNNNNRTG 1 cut(s) 634
Sse9I AATT 8 cut(s) 36, 107, 200, 222, 241, 415, 429, 477
SspI AATATT 1 cut(s) 738
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 298, 930
TaiI ACGT 5 cut(s) 58, 191, 515, 638, 972
TaqI TCGA 6 cut(s) 7, 70, 375, 402, 978, 996
TasI AATT 8 cut(s) 36, 107, 200, 222, 241, 415, 429, 477
TatI WGTACW 3 cut(s) 137, 231, 585
TfiI GAWTC 1 cut(s) 467
Tru1I TTAA 2 cut(s) 35, 204
Tru9I TTAA 2 cut(s) 35, 204
TspDTI ATGAA 3 cut(s) 234, 476, 936
TspGWI ACGGA 2 cut(s) 99, 807
Van91I CCANNNNNTGG 1 cut(s) 271
XapI RAATTY 3 cut(s) 200, 241, 415
XceI RCATGY 2 cut(s) 727, 958
Zsp2I ATGCAT 2 cut(s) 453, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.