Rmu_co8046860.1_g000001
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8046860.1
OG0000326
Physical Location & Seq
Reverse (-)
1 .. 465
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8046860.1_g000001.1.cds

Sequence Viewer

Length: 275 bp
atgcaagtgaagaaagagactgccaaattgcgccaaaagaacaatgaagctcggtttccttcatgggatgacaggttagatgacttctcattagatcaattgcttgctcttttgaaaaaactggagcacaaaatcgaagacgtgcacaagcattatgataagcaatatgctattgatgacagtatactacaacaaacggccttgtttccgaacaacaacgtagactattcacagatggttgcattgaaccaataccctactagtggttcgatgat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

91

Amino Acids

10.68

Weight (kDa)

5.84

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 184, 222
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 2 cut(s) 115, 247
AhlI ACTAGT 1 cut(s) 260
AjiI CACGTC 1 cut(s) 142
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw21I GWGCWC 2 cut(s) 129, 147
Alw26I GTCTC 1 cut(s) 11
Alw44I GTGCAC 1 cut(s) 143
AoxI GGCC 1 cut(s) 198
ApaLI GTGCAC 1 cut(s) 143
AspLEI GCGC 1 cut(s) 33
BaeGI GKGCMC 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 144
Bbv12I GWGCWC 2 cut(s) 129, 147
BccI CCATC 1 cut(s) 229
BceAI ACGGC 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 11
BcuI ACTAGT 1 cut(s) 260
BfaI CTAG 1 cut(s) 261
BmgBI CACGTC 1 cut(s) 142
BpiI GAAGAC 1 cut(s) 144
BpmI CTGGAG 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 263
BseNI ACTGG 1 cut(s) 126
BseSI GKGCMC 1 cut(s) 147
BshFI GGCC 1 cut(s) 200
BsiHKAI GWGCWC 2 cut(s) 129, 147
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 11
BsnI GGCC 1 cut(s) 200
Bsp1286I GDGCHC 2 cut(s) 129, 147
Bsp143I GATC 1 cut(s) 94
BspANI GGCC 1 cut(s) 200
BsrI ACTGG 1 cut(s) 126
BssMI GATC 1 cut(s) 94
BssNAI GTATAC 1 cut(s) 185
Bst1107I GTATAC 1 cut(s) 185
Bst4CI ACNGT 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 105
BstF5I GGATG 1 cut(s) 73
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 1 cut(s) 97
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 1 cut(s) 94
BstSLI GKGCMC 1 cut(s) 147
BstV2I GAAGAC 1 cut(s) 144
BstZ17I GTATAC 1 cut(s) 185
BsuRI GGCC 1 cut(s) 200
BtrI CACGTC 1 cut(s) 142
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 105
CfoI GCGC 1 cut(s) 33
CviAII CATG 1 cut(s) 63
CviJI RGCY 2 cut(s) 50, 200
CviKI_1 RGCY 2 cut(s) 50, 200
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
FaeI CATG 1 cut(s) 66
FaiI YATR 4 cut(s) 64, 156, 168, 185
FatI CATG 1 cut(s) 62
FblI GTMKAC 2 cut(s) 184, 222
FokI GGATG 1 cut(s) 80
FspBI CTAG 1 cut(s) 261
GlaI GCGC 1 cut(s) 32
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 1 cut(s) 200
HhaI GCGC 1 cut(s) 33
Hin1II CATG 1 cut(s) 66
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
Hpy166II GTNNAC 3 cut(s) 145, 185, 223
Hpy188I TCNGA 1 cut(s) 210
Hpy8I GTNNAC 3 cut(s) 145, 185, 223
HpyAV CCTTC 1 cut(s) 69
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4IV ACGT 2 cut(s) 141, 219
HpyCH4V TGCA 3 cut(s) 4, 145, 242
HpySE526I ACGT 2 cut(s) 141, 219
Hsp92II CATG 1 cut(s) 66
HspAI GCGC 1 cut(s) 31
Kzo9I GATC 1 cut(s) 94
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 2 cut(s) 58, 107
MaeI CTAG 1 cut(s) 261
MaeII ACGT 2 cut(s) 141, 219
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 2 cut(s) 22, 149
MfeI CAATTG 1 cut(s) 98
MhlI GDGCHC 2 cut(s) 129, 147
MluCI AATT 2 cut(s) 26, 98
MunI CAATTG 1 cut(s) 98
NdeII GATC 1 cut(s) 94
NlaIII CATG 1 cut(s) 66
Sau3AI GATC 1 cut(s) 94
SduI GDGCHC 2 cut(s) 129, 147
SetI ASST 4 cut(s) 52, 77, 144, 222
SgeI CNNG 9 cut(s) 17, 63, 75, 85, 116, 134, 154, 160, 214
SpeI ACTAGT 1 cut(s) 260
Sse9I AATT 2 cut(s) 26, 98
SspMI CTAG 1 cut(s) 261
TaaI ACNGT 1 cut(s) 182
TaiI ACGT 2 cut(s) 144, 222
TaqI TCGA 2 cut(s) 135, 269
TasI AATT 2 cut(s) 26, 98
TspDTI ATGAA 2 cut(s) 51, 60
VneI GTGCAC 1 cut(s) 143
XmiI GTMKAC 2 cut(s) 184, 222
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.