Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Forward (+)

9520276 .. 9520638

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G27050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTTCAAGAAAGCCTTGGAGCTTTCAACTCTGTGCAACATCGAAGTCTGTGTCATATATTATGGTCGTGACGGAGAACTCTTCAAGACATGGCCGGAGGATGAATCCAAGGTTCGAGACATGGCAGAGAGGTTTACCAAACTAAACGAGAGAGAGCGACGGAAGAAAAGAACCAATCTTTCTCTGTTTCTACGTAAGAAGATCCTCGACGACAATAAGCTCTCAGGGAAAGTCTTAGAGATGAAGGATTCGTTAGAAAGGGGTCTACGGGTGCTACAAGATAAGCTTCTGTTACTACAACCCGAGAATCAGACCAAGTCCCTGACTCGTTCTGTTTCTAGTTTAGATTATGTGTTCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

120

Amino Acids

14.19

Weight (kDa)

9.42

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	1 - 28	5.6e-10	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	265
AclWI	GGATC	1 cut(s)	196
AcoI	YGGCCR	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	7, 27, 85
AluBI	AGCT	3 cut(s)	22, 220, 286
AluI	AGCT	3 cut(s)	22, 220, 286
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	196
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	1 cut(s)	92
ArsI	GACNNNNNNTTYG	2 cut(s)	36, 68
AvaI	CYCGRG	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	1 cut(s)	339
BmeT110I	CYCGRG	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	15, 108
BseDI	CCNNGG	2 cut(s)	15, 108
BseGI	GGATG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	94
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	304
BsmAI	GTCTC	1 cut(s)	111
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	94
BsoBI	CYCGRG	1 cut(s)	302
Bsp143I	GATC	1 cut(s)	201
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	1 cut(s)	236
BspPI	GGATC	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	15, 108
BssMI	GATC	1 cut(s)	201
BssT1I	CCWWGG	2 cut(s)	15, 108
Bst6I	CTCTTC	1 cut(s)	86
BstBAI	YACGTR	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	223, 235
BstF5I	GGATG	1 cut(s)	106
BstKTI	GATC	1 cut(s)	204
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	201
BstSNI	TACGTA	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	106
CviAII	CATG	2 cut(s)	90, 121
CviJI	RGCY	5 cut(s)	14, 22, 94, 220, 286
CviKI_1	RGCY	5 cut(s)	14, 22, 94, 220, 286
DdeI	CTNAG	2 cut(s)	223, 235
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
EaeI	YGGCCR	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco105I	TACGTA	1 cut(s)	194
Eco130I	CCWWGG	2 cut(s)	15, 108
Eco88I	CYCGRG	1 cut(s)	302
EcoT14I	CCWWGG	2 cut(s)	15, 108
ErhI	CCWWGG	2 cut(s)	15, 108
FaeI	CATG	2 cut(s)	93, 124
FaiI	YATR	6 cut(s)	56, 58, 63, 91, 122, 351
FalI	AAGNNNNNCTT	3 cut(s)	31, 270, 302
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	2 cut(s)	89, 120
FblI	GTMKAC	1 cut(s)	265
FokI	GGATG	1 cut(s)	113
FspBI	CTAG	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	2 cut(s)	93, 124
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	4 cut(s)	104, 248, 307, 325
HpaII	CCGG	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	135, 266
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	4 cut(s)	7, 68, 85, 116
Hpy8I	GTNNAC	2 cut(s)	135, 266
Hpy99I	CGWCG	2 cut(s)	162, 212
HpyAV	CCTTC	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	1 cut(s)	36
HpyF3I	CTNAG	2 cut(s)	223, 235
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	2 cut(s)	93, 124
Kzo9I	GATC	1 cut(s)	201
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	3 cut(s)	108, 210, 335
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	2 cut(s)	68, 291
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	3 cut(s)	73, 175, 211
MflI	RGATCY	1 cut(s)	201
MlyI	GAGTC	1 cut(s)	319
MnlI	CCTC	3 cut(s)	91, 123, 215
MseI	TTAA	1 cut(s)	361
MspI	CCGG	1 cut(s)	95
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	2 cut(s)	93, 124
NmuCI	GTSAC	1 cut(s)	68
PfeI	GAWTC	3 cut(s)	104, 248, 307
PflFI	GACNNNGTC	1 cut(s)	316
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
Ppu21I	YACGTR	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	201
PsyI	GACNNNGTC	1 cut(s)	316
SaqAI	TTAA	1 cut(s)	361
Sau3AI	GATC	1 cut(s)	201
SchI	GAGTC	1 cut(s)	319
SetI	ASST	6 cut(s)	24, 114, 134, 196, 222, 288
SnaBI	TACGTA	1 cut(s)	194
SspMI	CTAG	1 cut(s)	339
StyI	CCWWGG	2 cut(s)	15, 108
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	3 cut(s)	42, 115, 207
TfiI	GAWTC	3 cut(s)	104, 248, 307
Tru1I	TTAA	1 cut(s)	361
Tru9I	TTAA	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	2 cut(s)	117, 257
TspGWI	ACGGA	2 cut(s)	87, 175
Tth111I	GACNNNGTC	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	265
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.