Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Forward (+)

23780832 .. 23781716

Gene Structure 885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G58890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGTTCCGAAAGTGGTCGACCTACAAAGGATAGCGAACGATAAGACAAGGATAACAACTTACAAGAAGAGGAAAGCTAGTCTTTACAAGAAGGCACAAGAGTTCTCAACTCTCTGCGGCGTCGAGACATGTCTCATCGTCTACGGTCCCACGAAGGCTACCGATGTGGTGATTTCCGAGCCAGAGATATGGCCGAAGGACGAGACCAAAGTCAGGGCCATCATACGCAAGTACAAAGACACAGTGTCGACCAGCTGCAGGAAAGAAACCAACGTGGAGACTTTCGTCAACGATGTAGGGAAAGGAAACGAGGTGGTGACTAAAAAGAGAGTGAAGCGTGAGAATAAGTATTCTAGTTGGGAGGAGAAGCTAGACAAGTGTTCACGAGAGCAACTACATGGGATTTTCTGTGCCGTGGATAGCAAGTTAAATGAAGCTGTAACGAGACAGGAGCGTAGTATGTTTAGGGTTAATCATCAAGCCATGGACACACCATTCCCGCAGAATTTAATGGACCAACAATTCATGCCACAGTATTTTCATGAGCAGCCACAGTTTCAAGGCTTCCCTAATAATTTCAATAATATGGGTTTCTCGTTGATTTCACCTCATGATGGTCAGATTCAAATGGACCCAAATCTCATGGAGAAGTGGACCGACTTGGCTTTGACTCAAAGCTTGATGATGTCAAAGGGAAACGATGGTACTCAATTCATGCAGAGGCAAGAACAACCATACTATAATCGTGAACAGGTTGTATCGAGGTCTGCAGGTTTCAATGTTAACCCGTTTATGGGATATCAAGTCCCGTTTAATATTCCTAATTGGAGATTATCGGGAAATCAAGTTGAAAATTGGGAGCTTTCAGGGAAGAAAACGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

294

Amino Acids

34.17

Weight (kDa)

9.04

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 52	8.4e-16	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	761
AccI	GTMKAC	3 cut(s)	18, 141, 248
AciI	CCGC	2 cut(s)	117, 500
AcoI	YGGCCR	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	505
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	2 cut(s)	233, 706
AfiI	CCNNNNNNNGG	5 cut(s)	213, 258, 614, 793, 794
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	5 cut(s)	560, 580, 626, 778, 851
AhdI	GACNNNNNGTC	1 cut(s)	244
AluBI	AGCT	6 cut(s)	77, 255, 370, 437, 678, 862
AluI	AGCT	6 cut(s)	77, 255, 370, 437, 678, 862
Alw26I	GTCTC	5 cut(s)	119, 137, 197, 272, 439
AoxI	GGCC	2 cut(s)	191, 216
ApeKI	GCWGC	2 cut(s)	255, 547
ApoI	RAATTY	1 cut(s)	505
AspS9I	GGNCC	5 cut(s)	146, 216, 514, 631, 654
AsuHPI	GGTGA	3 cut(s)	181, 328, 597
AvaII	GGWCC	4 cut(s)	146, 514, 631, 654
BauI	CACGAG	1 cut(s)	384
BbvI	GCAGC	2 cut(s)	242, 559
BccI	CCATC	3 cut(s)	227, 608, 695
BceAI	ACGGC	1 cut(s)	398
BcoDI	GTCTC	5 cut(s)	119, 137, 197, 272, 439
BfaI	CTAG	3 cut(s)	78, 354, 371
BfmI	CTRYAG	2 cut(s)	256, 768
BfuAI	ACCTGC	1 cut(s)	761
BisI	GCNGC	3 cut(s)	118, 256, 548
BlsI	GCNGC	3 cut(s)	119, 257, 549
Bme18I	GGWCC	4 cut(s)	146, 514, 631, 654
BmeRI	GACNNNNNGTC	1 cut(s)	244
BmgT120I	GGNCC	5 cut(s)	146, 216, 514, 631, 654
BmiI	GGNNCC	3 cut(s)	6, 148, 633
BoxI	GACNNNNGTC	2 cut(s)	209, 284
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	414, 483
Bsc4I	CCNNNNNNNGG	5 cut(s)	213, 258, 614, 793, 794
BseDI	CCNNGG	2 cut(s)	414, 483
BseLI	CCNNNNNNNGG	5 cut(s)	213, 258, 614, 793, 794
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	2 cut(s)	242, 559
BshFI	GGCC	2 cut(s)	193, 218
BslFI	GGGAC	2 cut(s)	132, 791
BslI	CCNNNNNNNGG	5 cut(s)	213, 258, 614, 793, 794
BsmAI	GTCTC	5 cut(s)	119, 137, 197, 272, 439
BsmFI	GGGAC	2 cut(s)	132, 791
BsnI	GGCC	2 cut(s)	193, 218
Bso31I	GGTCTC	1 cut(s)	197
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	2 cut(s)	117, 500
BspANI	GGCC	2 cut(s)	193, 218
BspHI	TCATGA	2 cut(s)	541, 610
BspLI	GGNNCC	3 cut(s)	6, 148, 633
BspMAI	CTGCAG	2 cut(s)	260, 772
BspMI	ACCTGC	1 cut(s)	761
BspTNI	GGTCTC	1 cut(s)	197
BssECI	CCNNGG	2 cut(s)	414, 483
BssNI	GRCGYC	1 cut(s)	120
BssSI	CACGAG	1 cut(s)	384
BssT1I	CCWWGG	1 cut(s)	483
Bst2BI	CACGAG	1 cut(s)	384
Bst4CI	ACNGT	4 cut(s)	146, 244, 534, 555
Bst6I	CTCTTC	1 cut(s)	62
BstACI	GRCGYC	1 cut(s)	120
BstDSI	CCRYGG	2 cut(s)	414, 483
BstMAI	GTCTC	5 cut(s)	119, 137, 197, 272, 439
BstNSI	RCATGY	1 cut(s)	132
BstPAI	GACNNNNGTC	2 cut(s)	209, 284
BstSFI	CTRYAG	2 cut(s)	256, 768
BstV1I	GCAGC	2 cut(s)	242, 559
BstXI	CCANNNNNNTGG	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	193, 218
BtgI	CCRYGG	2 cut(s)	414, 483
BtsIMutI	CAGTG	1 cut(s)	249
BveI	ACCTGC	1 cut(s)	761
CciI	TCATGA	2 cut(s)	541, 610
Cfr13I	GGNCC	5 cut(s)	146, 216, 514, 631, 654
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	2 cut(s)	232, 705
CviAII	CATG	8 cut(s)	129, 398, 484, 526, 542, 611, 643, 715
CviQI	GTAC	2 cut(s)	232, 705
DriI	GACNNNNNGTC	1 cut(s)	244
EaeI	YGGCCR	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	62
Eam1105I	GACNNNNNGTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	483
Eco31I	GGTCTC	1 cut(s)	197
Eco32I	GATATC	1 cut(s)	800
Eco47I	GGWCC	4 cut(s)	146, 514, 631, 654
EcoRV	GATATC	1 cut(s)	800
EcoT14I	CCWWGG	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	8 cut(s)	132, 401, 487, 529, 545, 614, 646, 718
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FaqI	GGGAC	2 cut(s)	132, 791
FatI	CATG	8 cut(s)	128, 397, 483, 525, 541, 610, 642, 714
FauI	CCCGC	1 cut(s)	507
FblI	GTMKAC	3 cut(s)	18, 141, 248
Fnu4HI	GCNGC	3 cut(s)	118, 256, 548
Fsp4HI	GCNGC	3 cut(s)	118, 256, 548
FspBI	CTAG	3 cut(s)	78, 354, 371
GluI	GCNGC	3 cut(s)	118, 256, 548
HaeIII	GGCC	2 cut(s)	193, 218
HgaI	GACGC	1 cut(s)	109
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	8 cut(s)	132, 401, 487, 529, 545, 614, 646, 718
HincII	GTYRAC	4 cut(s)	19, 249, 289, 784
HindII	GTYRAC	4 cut(s)	19, 249, 289, 784
HindIII	AAGCTT	1 cut(s)	676
HinfI	GANTC	2 cut(s)	622, 670
HpaI	GTTAAC	1 cut(s)	784
HphI	GGTGA	3 cut(s)	181, 328, 597
Hpy166II	GTNNAC	8 cut(s)	19, 142, 249, 289, 383, 654, 749, 784
Hpy188I	TCNGA	3 cut(s)	9, 178, 621
Hpy188III	TCNNGA	6 cut(s)	124, 384, 542, 611, 746, 837
Hpy8I	GTNNAC	8 cut(s)	19, 142, 249, 289, 383, 654, 749, 784
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	3 cut(s)	85, 148, 190
HpyCH4III	ACNGT	4 cut(s)	146, 244, 534, 555
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	3 cut(s)	258, 718, 770
HpySE526I	ACGT	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	8 cut(s)	132, 401, 487, 529, 545, 614, 646, 718
KspAI	GTTAAC	1 cut(s)	784
LmnI	GCTCC	2 cut(s)	451, 859
LpnPI	CCDG	8 cut(s)	195, 199, 244, 265, 434, 737, 756, 852
Lsp1109I	GCAGC	2 cut(s)	242, 559
MaeI	CTAG	3 cut(s)	78, 354, 371
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	2 cut(s)	316, 439
MboII	GAAGA	2 cut(s)	79, 883
MluCI	AATT	6 cut(s)	505, 521, 574, 710, 823, 853
MlyI	GAGTC	1 cut(s)	664
MnlI	CCTC	6 cut(s)	63, 304, 355, 618, 714, 756
MseI	TTAA	5 cut(s)	428, 471, 509, 783, 813
MspA1I	CMGCKG	1 cut(s)	255
NcoI	CCATGG	1 cut(s)	483
NlaIII	CATG	8 cut(s)	132, 401, 487, 529, 545, 614, 646, 718
NlaIV	GGNNCC	3 cut(s)	6, 148, 633
NmuCI	GTSAC	1 cut(s)	316
NspI	RCATGY	1 cut(s)	132
PagI	TCATGA	2 cut(s)	541, 610
PciI	ACATGT	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	622
PkrI	GCNGC	3 cut(s)	119, 257, 549
PleI	GAGTC	1 cut(s)	664
PpsI	GAGTC	1 cut(s)	664
PscI	ACATGT	1 cut(s)	128
PshAI	GACNNNNGTC	2 cut(s)	209, 284
PspN4I	GGNNCC	3 cut(s)	6, 148, 633
PspPI	GGNCC	5 cut(s)	146, 216, 514, 631, 654
PstI	CTGCAG	2 cut(s)	260, 772
PvuII	CAGCTG	1 cut(s)	255
RsaI	GTAC	2 cut(s)	233, 706
RsaNI	GTAC	2 cut(s)	232, 705
SalI	GTCGAC	2 cut(s)	17, 247
SaqAI	TTAA	5 cut(s)	428, 471, 509, 783, 813
SatI	GCNGC	3 cut(s)	118, 256, 548
Sau96I	GGNCC	5 cut(s)	146, 216, 514, 631, 654
SchI	GAGTC	1 cut(s)	664
SfcI	CTRYAG	2 cut(s)	256, 768
SinI	GGWCC	4 cut(s)	146, 514, 631, 654
Sse9I	AATT	6 cut(s)	505, 521, 574, 710, 823, 853
SsiI	CCGC	2 cut(s)	117, 500
SspI	AATATT	1 cut(s)	817
SspMI	CTAG	3 cut(s)	78, 354, 371
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	4 cut(s)	146, 244, 534, 555
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	4 cut(s)	18, 123, 248, 761
TaqII	GACCGA	1 cut(s)	671
TasI	AATT	6 cut(s)	505, 521, 574, 710, 823, 853
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	622
Tru1I	TTAA	5 cut(s)	428, 471, 509, 783, 813
Tru9I	TTAA	5 cut(s)	428, 471, 509, 783, 813
TscAI	CASTG	1 cut(s)	249
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	2 cut(s)	255, 547
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	4 cut(s)	447, 514, 530, 703
TspRI	CASTG	1 cut(s)	249
VpaK11BI	GGWCC	4 cut(s)	146, 514, 631, 654
XapI	RAATTY	1 cut(s)	505
XceI	RCATGY	1 cut(s)	132
XmiI	GTMKAC	3 cut(s)	18, 141, 248
XspI	CTAG	3 cut(s)	78, 354, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.