Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Forward (+)

980955 .. 981711

Gene Structure 757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G02235.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAAGCAATCTTCTTTTTCTTCTTCTTCTTCGTCACGTAATTCAACTAGTTTAACAAACAGACTCAAAACCATCTTCAAAAAAGCTGAAGAGCTTTCGATTCTCTGTGCTATTGACGTTTGCGTCATCTATTACGGACCAGACGGTGAACTGAGAACATGGCCTAAGGAGAGAAATACAGTGAAAGACATGGCTTCGAGATATAAAGAGGCCACAAAACGCAAGAAGAAACGGACTCTTTCTACTCTGCAAGAAAGGCTTCGTATTGTTGAGTCGCAGAAACAACAAAACAAAAACTTGGTGCATCAGAGTTTAACACCATCGTATCTGAACCAGATCCAACACTTGAATCCTAGCAACTTCTCGCCGTATATGTACAACCATGGAGATGCTGCTACTCTCTCACAACTCCCACTGTCTGCTTCACTCTCCAATCAACTCCAATTACCTGAATCACTTGATGCGGCATGGTTTTGGTCAGAACATGTGTTTGGACAACATCACCAACAACAACAACTTTCAACATCCTGGCGTGTCAAACACACAAGAATACTCACCGTTTCTTTCGGTACAAGCATCTGCAGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

196

Amino Acids

22.48

Weight (kDa)

9.68

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	9 - 54	2.5e-15	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
AciI	CCGC	1 cut(s)	464
AclWI	GGATC	1 cut(s)	331
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	2 cut(s)	377, 571
AflIII	ACRYGT	1 cut(s)	484
AgsI	TTSAA	4 cut(s)	45, 79, 349, 522
AhlI	ACTAGT	1 cut(s)	47
AjnI	CCWGG	1 cut(s)	527
AjuI	GAANNNNNNNTTGG	2 cut(s)	474, 506
AluBI	AGCT	2 cut(s)	86, 94
AluI	AGCT	2 cut(s)	86, 94
AlwI	GGATC	1 cut(s)	331
AoxI	GGCC	2 cut(s)	161, 210
ApeKI	GCWGC	1 cut(s)	392
Asp700I	GAANNNNTTC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	137
AsuHPI	GGTGA	3 cut(s)	158, 494, 547
AvaII	GGWCC	1 cut(s)	137
AxyI	CCTNAGG	1 cut(s)	165
BaeI	ACNNNNGTAYC	2 cut(s)	308, 341
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	2 cut(s)	80, 328
BceAI	ACGGC	1 cut(s)	352
BciT130I	CCWGG	1 cut(s)	529
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	2 cut(s)	48, 354
BfmI	CTRYAG	1 cut(s)	580
BisI	GCNGC	2 cut(s)	393, 465
BlsI	GCNGC	2 cut(s)	394, 466
Bme1390I	CCNGG	1 cut(s)	529
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	529
BmsI	GCATC	4 cut(s)	313, 379, 451, 585
BsaAI	YACGTR	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	382
Bse21I	CCTNAGG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	529
BseDI	CCNNGG	1 cut(s)	382
BseGI	GGATG	1 cut(s)	524
BseMII	CTCAG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	379
BshFI	GGCC	2 cut(s)	163, 212
BsnI	GGCC	2 cut(s)	163, 212
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	1 cut(s)	336
Bsp19I	CCATGG	1 cut(s)	382
BspACI	CCGC	1 cut(s)	464
BspANI	GGCC	2 cut(s)	163, 212
BspCNI	CTCAG	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	584
BspPI	GGATC	1 cut(s)	331
BspQI	GCTCTTC	1 cut(s)	84
BsrGI	TGTACA	1 cut(s)	375
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	529
Bst4CI	ACNGT	4 cut(s)	146, 181, 417, 559
Bst6I	CTCTTC	1 cut(s)	84
BstAUI	TGTACA	1 cut(s)	375
BstBAI	YACGTR	1 cut(s)	38
BstDEI	CTNAG	2 cut(s)	152, 165
BstDSI	CCRYGG	1 cut(s)	382
BstF5I	GGATG	1 cut(s)	524
BstKTI	GATC	1 cut(s)	339
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	1 cut(s)	256
BstNI	CCWGG	1 cut(s)	529
BstNSI	RCATGY	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	527
BstSFI	CTRYAG	1 cut(s)	580
BstV1I	GCAGC	1 cut(s)	379
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
Bsu36I	CCTNAGG	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	163, 212
BtgI	CCRYGG	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	524
BtsI	GCAGTG	1 cut(s)	589
BtsIMutI	CAGTG	3 cut(s)	186, 413, 589
Cfr13I	GGNCC	1 cut(s)	137
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	376, 570
CviAII	CATG	5 cut(s)	159, 190, 383, 468, 485
CviJI	RGCY	6 cut(s)	86, 94, 163, 194, 212, 259
CviKI_1	RGCY	6 cut(s)	86, 94, 163, 194, 212, 259
CviQI	GTAC	2 cut(s)	376, 570
DdeI	CTNAG	2 cut(s)	152, 165
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	382
Eco47I	GGWCC	1 cut(s)	137
Eco57I	CTGAAG	1 cut(s)	108
Eco81I	CCTNAGG	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	527
EcoT14I	CCWWGG	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	5 cut(s)	162, 193, 386, 471, 488
FaiI	YATR	8 cut(s)	160, 191, 204, 372, 374, 384, 469, 486
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FatI	CATG	5 cut(s)	158, 189, 382, 467, 484
Fnu4HI	GCNGC	2 cut(s)	393, 465
FokI	GGATG	1 cut(s)	511
Fsp4HI	GCNGC	2 cut(s)	393, 465
FspBI	CTAG	2 cut(s)	48, 354
GluI	GCNGC	2 cut(s)	393, 465
HaeIII	GGCC	2 cut(s)	163, 212
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	5 cut(s)	162, 193, 386, 471, 488
HinfI	GANTC	6 cut(s)	63, 100, 235, 272, 349, 452
HphI	GGTGA	3 cut(s)	158, 494, 547
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	3 cut(s)	309, 330, 481
Hpy188III	TCNNGA	1 cut(s)	198
Hpy8I	GTNNAC	1 cut(s)	149
HpyCH4III	ACNGT	4 cut(s)	146, 181, 417, 559
HpyCH4IV	ACGT	2 cut(s)	37, 117
HpyCH4V	TGCA	3 cut(s)	250, 304, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
HpyF3I	CTNAG	2 cut(s)	152, 165
HpySE526I	ACGT	2 cut(s)	37, 117
Hsp92II	CATG	5 cut(s)	162, 193, 386, 471, 488
Kzo9I	GATC	1 cut(s)	336
LguI	GCTCTTC	1 cut(s)	84
LpnPI	CCDG	5 cut(s)	153, 347, 462, 514, 541
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	4 cut(s)	313, 379, 451, 585
MaeI	CTAG	2 cut(s)	48, 354
MaeII	ACGT	2 cut(s)	37, 117
MaeIII	GTNAC	1 cut(s)	33
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	8 cut(s)	3, 12, 15, 18, 21, 67, 101, 238
MflI	RGATCY	1 cut(s)	336
MluCI	AATT	2 cut(s)	40, 443
MlyI	GAGTC	3 cut(s)	57, 229, 281
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	1 cut(s)	202
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	2 cut(s)	53, 314
MslI	CAYNNNNRTG	1 cut(s)	387
MspR9I	CCNGG	1 cut(s)	529
MvaI	CCWGG	1 cut(s)	529
MwoI	GCNNNNNNNGC	1 cut(s)	256
NcoI	CCATGG	1 cut(s)	382
NdeII	GATC	1 cut(s)	336
NlaIII	CATG	5 cut(s)	162, 193, 386, 471, 488
NmuCI	GTSAC	1 cut(s)	33
NspI	RCATGY	1 cut(s)	488
PciI	ACATGT	1 cut(s)	484
PciSI	GCTCTTC	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	3 cut(s)	100, 349, 452
PkrI	GCNGC	2 cut(s)	394, 466
PleI	GAGTC	3 cut(s)	57, 229, 280
PpsI	GAGTC	3 cut(s)	57, 229, 280
Ppu21I	YACGTR	1 cut(s)	38
PscI	ACATGT	1 cut(s)	484
Psp6I	CCWGG	1 cut(s)	527
PspGI	CCWGG	1 cut(s)	527
PspPI	GGNCC	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	336
RsaI	GTAC	2 cut(s)	377, 571
RsaNI	GTAC	2 cut(s)	376, 570
RseI	CAYNNNNRTG	1 cut(s)	387
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	53, 314
SatI	GCNGC	2 cut(s)	393, 465
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	1 cut(s)	137
SchI	GAGTC	3 cut(s)	57, 229, 281
ScrFI	CCNGG	1 cut(s)	529
SetI	ASST	5 cut(s)	40, 88, 96, 120, 451
SfaNI	GCATC	4 cut(s)	313, 379, 451, 585
SfcI	CTRYAG	1 cut(s)	580
SinI	GGWCC	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	387
SpeI	ACTAGT	1 cut(s)	47
Sse9I	AATT	2 cut(s)	40, 443
SsiI	CCGC	1 cut(s)	464
SspMI	CTAG	2 cut(s)	48, 354
StyD4I	CCNGG	1 cut(s)	527
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	4 cut(s)	146, 181, 417, 559
TaiI	ACGT	2 cut(s)	40, 120
TaqI	TCGA	2 cut(s)	98, 197
TasI	AATT	2 cut(s)	40, 443
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	3 cut(s)	100, 349, 452
Tru1I	TTAA	2 cut(s)	53, 314
Tru9I	TTAA	2 cut(s)	53, 314
TscAI	CASTG	3 cut(s)	186, 420, 589
TseFI	GTSAC	1 cut(s)	33
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	1 cut(s)	33
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	150, 247
TspRI	CASTG	3 cut(s)	186, 420, 589
VpaK11BI	GGWCC	1 cut(s)	137
XceI	RCATGY	1 cut(s)	488
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	2 cut(s)	48, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.