Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Reverse (-)

14839047 .. 14840301

Gene Structure 1255 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G37415.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAGAGACCCAGATATTGTACAAAATACGCGATCTTTGATATTGTTGAGAGTCTTGACGCATGAAAAGTTGATTCAAAGTCATCGCTATTTCTTCGTTGGTTGGATTCACAAGAATCTCTCTCGCTTTCGACGGAAGATTCGAAGAAGATTCCTCCATTGCGATTTCTCAGGATTCGGATTTTTTCCGAGAAGATTTCTTTTCGGTTTTGTTCTGGAGAAGATGGACCATCTTCAAGAAAGCTTCAGAGGCTCAGAGCTTTGCATACTCTGTGATATCGAAGCCTGCGTCATCTATTACGGACCGGACGGAGAACTCAAGACATGGCCTAAGGAGCGAGAGAAAGTGGAAGACATTGCTCTCAGGTATAGTCAATTAAACGAAGCCTTGAGAAGGAAGAAAAGTGTTACTCTTTATGACTTCCTGAACAAGAAGAAGGACAAGACGAATTTGGAGAAGAAAGCAATGATAACGGACAATGATGACTTGAAGACTTGTTTGAAGAACGTGAATGTTTTAAAGTCTCCAATCGCTGATCATTACTTTAATGACCAAATTTCTCAACTGATTCAGTCCTTAGAACCTCATGTCTCTAAAGTCCAAGAAAGGATTCGTTTTGTTGAGTCGCAGAAACATAAGGAGACAAAACTGGATCATCAGAGTTTAGCATCAATATATTCTCTGAACCAATCTTTGAACCCTAGCCAGTTCACGCTGTTTTTGTACAACCATGGAGACAATACTATGTCTCAGATCCCAAACATGTTTATGAACAACAACAACTTCCAACATTCTTTTGTCTCAAACACACAAGATTACTCTGCTCTCCAAGAATCGGTGAATAACAACTATGGGTTGATGCCGAATGTTCTTTGTGGTTATGATCAGAACCTGTTCACGAGTGATATTACCAACAACAACCTTCTTATCGACAACTCGATGTATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

316

Amino Acids

37.29

Weight (kDa)

8.76

Isoelectric Point (pI)

47.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	31
AclWI	GGATC	2 cut(s)	660, 748
AcsI	RAATTY	2 cut(s)	448, 555
AcuI	CTGAAG	1 cut(s)	229
AfaI	GTAC	2 cut(s)	21, 725
AfiI	CCNNNNNNNGG	2 cut(s)	393, 835
AflIII	ACRYGT	1 cut(s)	762
AgsI	TTSAA	5 cut(s)	77, 236, 490, 502, 697
AjuI	GAANNNNNNNTTGG	2 cut(s)	594, 626
AluBI	AGCT	2 cut(s)	243, 259
AluI	AGCT	2 cut(s)	243, 259
Alw26I	GTCTC	6 cut(s)	528, 595, 635, 729, 753, 805
AlwI	GGATC	2 cut(s)	660, 748
AlwNI	CAGNNNCTG	1 cut(s)	892
AoxI	GGCC	1 cut(s)	326
ApoI	RAATTY	2 cut(s)	448, 555
ArsI	GACNNNNNNTTYG	4 cut(s)	123, 155, 273, 305
Asp700I	GAANNNNTTC	2 cut(s)	609, 893
AspS9I	GGNCC	2 cut(s)	226, 302
AsuHPI	GGTGA	1 cut(s)	850
AsuII	TTCGAA	1 cut(s)	142
AvaII	GGWCC	2 cut(s)	226, 302
AxyI	CCTNAGG	1 cut(s)	330
BauI	CACGAG	1 cut(s)	898
BbsI	GAAGAC	2 cut(s)	357, 497
BccI	CCATC	2 cut(s)	217, 237
BclI	TGATCA	2 cut(s)	535, 883
BcoDI	GTCTC	6 cut(s)	528, 595, 635, 729, 753, 805
BfaI	CTAG	1 cut(s)	702
Bme18I	GGWCC	2 cut(s)	226, 302
BmgT120I	GGNCC	2 cut(s)	226, 302
BmsI	GCATC	2 cut(s)	677, 849
BpiI	GAAGAC	2 cut(s)	357, 497
BpmI	CTGGAG	1 cut(s)	236
Bpu14I	TTCGAA	1 cut(s)	142
BpuEI	CTTGAG	2 cut(s)	302, 409
BsaJI	CCNNGG	1 cut(s)	730
BsaWI	WCCGGW	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	2 cut(s)	393, 835
Bse1I	ACTGG	2 cut(s)	654, 706
Bse21I	CCTNAGG	1 cut(s)	330
Bse3DI	GCAATG	3 cut(s)	157, 354, 471
BseDI	CCNNGG	1 cut(s)	730
BseLI	CCNNNNNNNGG	2 cut(s)	393, 835
BseMI	GCAATG	3 cut(s)	157, 354, 471
BseMII	CTCAG	4 cut(s)	183, 267, 376, 764
BseNI	ACTGG	2 cut(s)	654, 706
Bsh1236I	CGCG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	328
BsiSI	CCGG	1 cut(s)	305
BslI	CCNNNNNNNGG	2 cut(s)	393, 835
BsmAI	GTCTC	6 cut(s)	528, 595, 635, 729, 753, 805
BsnI	GGCC	1 cut(s)	328
Bsp119I	TTCGAA	1 cut(s)	142
Bsp1407I	TGTACA	2 cut(s)	19, 723
Bsp143I	GATC	5 cut(s)	32, 535, 652, 753, 883
Bsp19I	CCATGG	1 cut(s)	730
BspANI	GGCC	1 cut(s)	328
BspCNI	CTCAG	4 cut(s)	182, 266, 375, 763
BspFNI	CGCG	1 cut(s)	31
BspPI	GGATC	2 cut(s)	660, 748
BspT104I	TTCGAA	1 cut(s)	142
BsrDI	GCAATG	3 cut(s)	157, 354, 471
BsrGI	TGTACA	2 cut(s)	19, 723
BsrI	ACTGG	2 cut(s)	654, 706
BssECI	CCNNGG	1 cut(s)	730
BssMI	GATC	5 cut(s)	32, 535, 652, 753, 883
BssSI	CACGAG	1 cut(s)	898
BssT1I	CCWWGG	1 cut(s)	730
Bst2BI	CACGAG	1 cut(s)	898
BstAUI	TGTACA	2 cut(s)	19, 723
BstBI	TTCGAA	1 cut(s)	142
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	6 cut(s)	169, 253, 330, 362, 577, 750
BstDSI	CCRYGG	1 cut(s)	730
BstENI	CCTNNNNNAGG	1 cut(s)	391
BstFNI	CGCG	1 cut(s)	31
BstKTI	GATC	5 cut(s)	35, 538, 655, 756, 886
BstMAI	GTCTC	6 cut(s)	528, 595, 635, 729, 753, 805
BstMBI	GATC	5 cut(s)	32, 535, 652, 753, 883
BstMWI	GCNNNNNNNGC	2 cut(s)	249, 334
BstNSI	RCATGY	1 cut(s)	766
BstUI	CGCG	1 cut(s)	31
BstV2I	GAAGAC	2 cut(s)	357, 497
BstX2I	RGATCY	1 cut(s)	753
BstYI	RGATCY	1 cut(s)	753
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	328
BtgI	CCRYGG	1 cut(s)	730
BtgZI	GCGATG	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	286
CaiI	CAGNNNCTG	1 cut(s)	892
Cfr13I	GGNCC	2 cut(s)	226, 302
CpoI	CGGWCCG	1 cut(s)	302
CseI	GACGC	2 cut(s)	67, 277
Csp6I	GTAC	2 cut(s)	20, 724
CspI	CGGWCCG	1 cut(s)	302
CviAII	CATG	5 cut(s)	62, 324, 587, 731, 763
CviJI	RGCY	7 cut(s)	243, 252, 259, 284, 328, 386, 705
CviKI_1	RGCY	7 cut(s)	243, 252, 259, 284, 328, 386, 705
CviQI	GTAC	2 cut(s)	20, 724
DdeI	CTNAG	6 cut(s)	169, 253, 330, 362, 577, 750
DpnI	GATC	5 cut(s)	34, 537, 654, 755, 885
DpnII	GATC	5 cut(s)	32, 535, 652, 753, 883
DraI	TTTAAA	1 cut(s)	519
Eco130I	CCWWGG	1 cut(s)	730
Eco32I	GATATC	1 cut(s)	277
Eco47I	GGWCC	2 cut(s)	226, 302
Eco57I	CTGAAG	1 cut(s)	229
Eco81I	CCTNAGG	1 cut(s)	330
EcoNI	CCTNNNNNAGG	1 cut(s)	391
EcoRV	GATATC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	730
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	5 cut(s)	65, 327, 590, 734, 766
FatI	CATG	5 cut(s)	61, 323, 586, 730, 762
FbaI	TGATCA	2 cut(s)	535, 883
FspBI	CTAG	1 cut(s)	702
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	1 cut(s)	328
HapII	CCGG	1 cut(s)	305
HgaI	GACGC	2 cut(s)	67, 277
Hin1II	CATG	5 cut(s)	65, 327, 590, 734, 766
HindIII	AAGCTT	1 cut(s)	241
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	1 cut(s)	850
Hpy166II	GTNNAC	2 cut(s)	711, 897
Hpy188I	TCNGA	9 cut(s)	179, 189, 248, 256, 660, 684, 753, 888, 950
Hpy188III	TCNNGA	7 cut(s)	55, 171, 215, 236, 319, 424, 898
Hpy8I	GTNNAC	2 cut(s)	711, 897
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	3 cut(s)	387, 430, 932
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	1 cut(s)	264
HpyF10VI	GCNNNNNNNGC	2 cut(s)	249, 334
HpyF3I	CTNAG	6 cut(s)	169, 253, 330, 362, 577, 750
HpySE526I	ACGT	1 cut(s)	507
Hsp92II	CATG	5 cut(s)	65, 327, 590, 734, 766
Ksp22I	TGATCA	2 cut(s)	535, 883
Kzo9I	GATC	5 cut(s)	32, 535, 652, 753, 883
LmnI	GCTCC	1 cut(s)	334
LweI	GCATC	2 cut(s)	677, 849
MaeI	CTAG	1 cut(s)	702
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	5 cut(s)	34, 537, 654, 755, 885
MboI	GATC	5 cut(s)	32, 535, 652, 753, 883
MflI	RGATCY	1 cut(s)	753
MluCI	AATT	3 cut(s)	374, 448, 555
MlyI	GAGTC	2 cut(s)	60, 632
MmeI	TCCRAC	2 cut(s)	83, 811
MnlI	CCTC	3 cut(s)	164, 242, 594
MroXI	GAANNNNTTC	2 cut(s)	609, 893
MseI	TTAA	3 cut(s)	377, 518, 546
MslI	CAYNNNNRTG	1 cut(s)	767
MspI	CCGG	1 cut(s)	305
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	2 cut(s)	249, 334
NcoI	CCATGG	1 cut(s)	730
NdeII	GATC	5 cut(s)	32, 535, 652, 753, 883
NlaIII	CATG	5 cut(s)	65, 327, 590, 734, 766
NspI	RCATGY	1 cut(s)	766
NspV	TTCGAA	1 cut(s)	142
PciI	ACATGT	1 cut(s)	762
PcsI	WCGNNNNNNNCGW	2 cut(s)	139, 285
PdmI	GAANNNNTTC	2 cut(s)	609, 893
PfeI	GAWTC	9 cut(s)	73, 106, 115, 139, 150, 174, 568, 610, 833
PleI	GAGTC	2 cut(s)	59, 631
PpsI	GAGTC	2 cut(s)	59, 631
PscI	ACATGT	1 cut(s)	762
PspPI	GGNCC	2 cut(s)	226, 302
PstNI	CAGNNNCTG	1 cut(s)	892
PsuI	RGATCY	1 cut(s)	753
RsaI	GTAC	2 cut(s)	21, 725
RsaNI	GTAC	2 cut(s)	20, 724
RseI	CAYNNNNRTG	1 cut(s)	767
Rsr2I	CGGWCCG	1 cut(s)	302
RsrII	CGGWCCG	1 cut(s)	302
SaqAI	TTAA	3 cut(s)	377, 518, 546
Sau3AI	GATC	5 cut(s)	32, 535, 652, 753, 883
Sau96I	GGNCC	2 cut(s)	226, 302
SchI	GAGTC	2 cut(s)	60, 632
SetI	ASST	7 cut(s)	245, 261, 368, 510, 586, 894, 924
SfaNI	GCATC	2 cut(s)	677, 849
SfuI	TTCGAA	1 cut(s)	142
SinI	GGWCC	2 cut(s)	226, 302
SmiMI	CAYNNNNRTG	1 cut(s)	767
SmlI	CTYRAG	2 cut(s)	317, 388
SmoI	CTYRAG	2 cut(s)	317, 388
Sse9I	AATT	3 cut(s)	374, 448, 555
SspMI	CTAG	1 cut(s)	702
StyI	CCWWGG	1 cut(s)	730
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	5 cut(s)	130, 142, 279, 930, 938
TasI	AATT	3 cut(s)	374, 448, 555
TatI	WGTACW	2 cut(s)	19, 723
TfiI	GAWTC	9 cut(s)	73, 106, 115, 139, 150, 174, 568, 610, 833
Tru1I	TTAA	3 cut(s)	377, 518, 546
Tru9I	TTAA	3 cut(s)	377, 518, 546
TspDTI	ATGAA	2 cut(s)	78, 785
TspGWI	ACGGA	4 cut(s)	148, 315, 324, 488
VpaK11BI	GGWCC	2 cut(s)	226, 302
XagI	CCTNNNNNAGG	1 cut(s)	391
XapI	RAATTY	2 cut(s)	448, 555
XceI	RCATGY	1 cut(s)	766
XmnI	GAANNNNTTC	2 cut(s)	609, 893
XspI	CTAG	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.