Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Reverse (-)

51625285 .. 51625725

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029934

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGAACTCTTCCCCAGTTCTTTAAGAAAGCCTCTCCGGGATCGGGAGAGGAATTTATGTAAGAAGGCGGACGAGCTTTCAATACTTTGTGGTACCGATGTATGCATGATCATCTTCAAACCTCAGAAGACCAAACCAGAGACTTGGCCCCGAGATTGTTCCCAAGTCCACCACATTATCAAAAAGTACAAGGCAATGGCGATGAAGAACAATGACATCAAAGGTACAAGAAGTCCTTCATCCCTGTGGGTAGTCAGAGACGCCACAGATGCTACTACTGCCCATTCTACTTGTAGTCATGTAACAAATAACAAGATGAAATTGGACTTAAATCTTTCTGATTCTTATGATTCAGAATTGATTGGAGATGATGAGGCAGAGCTTGCTATGCTGCGAGCTATAGCCAAGAGAATTGCTTTACGGGAGGCAACACATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

147

Amino Acids

16.59

Weight (kDa)

8.83

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	15 - 46	1.2e-09	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	92
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	52
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	3 cut(s)	94, 188, 226
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	2 cut(s)	81, 118
AluBI	AGCT	3 cut(s)	76, 382, 398
AluI	AGCT	3 cut(s)	76, 382, 398
Alw26I	GTCTC	2 cut(s)	134, 252
AlwI	GGATC	1 cut(s)	48
Ama87I	CYCGRG	1 cut(s)	150
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	391
ApoI	RAATTY	1 cut(s)	52
Asp700I	GAANNNNTTC	1 cut(s)	235
Asp718I	GGTACC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	147
AsuC2I	CCSGG	1 cut(s)	38
AvaI	CYCGRG	1 cut(s)	150
BaeI	ACNNNNGTAYC	2 cut(s)	84, 117
BanI	GGYRCC	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	378
BclI	TGATCA	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	134, 252
BfmI	CTRYAG	1 cut(s)	399
BisI	GCNGC	1 cut(s)	392
BlsI	GCNGC	1 cut(s)	393
Bme1390I	CCNGG	1 cut(s)	38
BmeT110I	CYCGRG	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	2 cut(s)	94, 149
BmrFI	CCNGG	1 cut(s)	38
BmrI	ACTGGG	1 cut(s)	9
BmsI	GCATC	1 cut(s)	259
BmuI	ACTGGG	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	15
Bse3DI	GCAATG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	239
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	378
BshFI	GGCC	1 cut(s)	148
BshNI	GGYRCC	1 cut(s)	92
BsiHKCI	CYCGRG	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	2 cut(s)	134, 252
BsmBI	CGTCTC	1 cut(s)	252
BsnI	GGCC	1 cut(s)	148
BsoBI	CYCGRG	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	40, 108
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	94, 149
BspPI	GGATC	1 cut(s)	48
BspT107I	GGYRCC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	15
BssMI	GATC	2 cut(s)	40, 108
BssNI	GRCGYC	1 cut(s)	261
Bst6I	CTCTTC	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	261
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstC8I	GCNNGC	2 cut(s)	384, 396
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	239
BstKTI	GATC	2 cut(s)	43, 111
BstMAI	GTCTC	2 cut(s)	134, 252
BstMBI	GATC	2 cut(s)	40, 108
BstMWI	GCNNNNNNNGC	4 cut(s)	269, 278, 383, 388
BstSCI	CCNGG	1 cut(s)	36
BstSFI	CTRYAG	1 cut(s)	399
BstV1I	GCAGC	1 cut(s)	378
BstV2I	GAAGAC	1 cut(s)	134
BstXI	CCANNNNNNTGG	1 cut(s)	144
BsuRI	GGCC	1 cut(s)	148
BtgZI	GCGATG	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	239
Cac8I	GCNNGC	2 cut(s)	384, 396
Cfr13I	GGNCC	1 cut(s)	147
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	3 cut(s)	93, 187, 225
CviAII	CATG	2 cut(s)	106, 299
CviJI	RGCY	6 cut(s)	31, 76, 148, 382, 398, 404
CviKI_1	RGCY	6 cut(s)	31, 76, 148, 382, 398, 404
CviQI	GTAC	3 cut(s)	93, 187, 225
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	2 cut(s)	42, 110
DpnII	GATC	2 cut(s)	40, 108
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
EciI	GGCGGA	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	107
Esp3I	CGTCTC	1 cut(s)	252
FaeI	CATG	2 cut(s)	109, 302
FaiI	YATR	8 cut(s)	58, 103, 107, 300, 348, 389, 401, 435
FalI	AAGNNNNNCTT	2 cut(s)	220, 252
FatI	CATG	2 cut(s)	105, 298
FbaI	TGATCA	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	392
FokI	GGATG	1 cut(s)	226
Fsp4HI	GCNGC	1 cut(s)	392
GluI	GCNGC	1 cut(s)	392
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	1 cut(s)	37
HgaI	GACGC	1 cut(s)	269
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	2 cut(s)	109, 302
HinfI	GANTC	2 cut(s)	341, 350
HpaII	CCGG	1 cut(s)	37
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	4 cut(s)	126, 257, 340, 355
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	58, 246
HpyCH4V	TGCA	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	4 cut(s)	269, 278, 383, 388
HpyF3I	CTNAG	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	2 cut(s)	109, 302
KpnI	GGTACC	1 cut(s)	96
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	40, 108
LpnPI	CCDG	4 cut(s)	28, 50, 150, 257
Lsp1109I	GCAGC	1 cut(s)	378
LweI	GCATC	1 cut(s)	259
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	2 cut(s)	42, 110
MboI	GATC	2 cut(s)	40, 108
MboII	GAAGA	3 cut(s)	106, 139, 217
MluCI	AATT	4 cut(s)	52, 320, 356, 411
MnlI	CCTC	5 cut(s)	42, 42, 132, 367, 418
Mph1103I	ATGCAT	1 cut(s)	107
MroXI	GAANNNNTTC	1 cut(s)	235
MseI	TTAA	3 cut(s)	23, 329, 439
MslI	CAYNNNNRTG	1 cut(s)	244
MspI	CCGG	1 cut(s)	37
MspR9I	CCNGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	4 cut(s)	269, 278, 383, 388
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	2 cut(s)	40, 108
NlaIII	CATG	2 cut(s)	109, 302
NlaIV	GGNNCC	2 cut(s)	94, 149
NsiI	ATGCAT	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	235
PfeI	GAWTC	2 cut(s)	341, 350
PfoI	TCCNGGA	1 cut(s)	36
PkrI	GCNGC	1 cut(s)	393
PspN4I	GGNNCC	2 cut(s)	94, 149
PspPI	GGNCC	1 cut(s)	147
RsaI	GTAC	3 cut(s)	94, 188, 226
RsaNI	GTAC	3 cut(s)	93, 187, 225
RseI	CAYNNNNRTG	1 cut(s)	244
SaqAI	TTAA	3 cut(s)	23, 329, 439
SatI	GCNGC	1 cut(s)	392
Sau3AI	GATC	2 cut(s)	40, 108
Sau96I	GGNCC	1 cut(s)	147
ScrFI	CCNGG	1 cut(s)	38
SetI	ASST	5 cut(s)	78, 124, 226, 384, 400
SfaNI	GCATC	1 cut(s)	259
SfcI	CTRYAG	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	244
Sse9I	AATT	4 cut(s)	52, 320, 356, 411
SsiI	CCGC	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	36
TasI	AATT	4 cut(s)	52, 320, 356, 411
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	2 cut(s)	341, 350
Tru1I	TTAA	3 cut(s)	23, 329, 439
Tru9I	TTAA	3 cut(s)	23, 329, 439
TseI	GCWGC	1 cut(s)	391
TspDTI	ATGAA	3 cut(s)	218, 228, 332
XapI	RAATTY	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	235
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.