Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Forward (+)

18636303 .. 18636876

Gene Structure 574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG088300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGATGGAACTCTTGCCCAGTTCTCGAAGAAAGCCTCTCAGGGATTGGGAGAGGAATTTATGTAAGAAGGCGGACGAGCTTTCAATACTTTGTGGTACCGATGTATGCATGATCATCTTCAAACCTCAGAAGACCAAACCAGAGACTTGGCCCCGAGATTGTACACAAGTCCACCACATTATCAAAAAGTACAAGGCAATGGCGATGAAGAACAATGATATCAAAGGTACAAGAAGTCCTTCATCCCTGGGGGCAGTCAGAGACGCCACAGATGCTACTACTGCTCATTCTACTTGTAGTCATGTAACAAATAACAAGATGAAATTGGACTTAAATATTTCTGATTCTTATGATTCAGAATTGATTGGAGATGATGAGGCAGAGCTTGCTACACTGGAAGCTATGCTGCAAGCTATAGCCAAGAGAATTGCTTTACGGGAGGCAACACATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

151

Amino Acids

17.0

Weight (kDa)

8.27

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	20 - 47	3.2e-09	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	95
AccB1I	GGYRCC	1 cut(s)	95
AciI	CCGC	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	55
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	4 cut(s)	97, 163, 191, 229
AgsI	TTSAA	2 cut(s)	84, 121
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	4 cut(s)	79, 385, 401, 413
AluI	AGCT	4 cut(s)	79, 385, 401, 413
Alw26I	GTCTC	2 cut(s)	137, 255
Ama87I	CYCGRG	1 cut(s)	153
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	1 cut(s)	406
ApoI	RAATTY	1 cut(s)	55
Asp700I	GAANNNNTTC	1 cut(s)	238
Asp718I	GGTACC	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	150
AvaI	CYCGRG	1 cut(s)	153
BaeI	ACNNNNGTAYC	2 cut(s)	87, 120
BanI	GGYRCC	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	393
BciT130I	CCWGG	1 cut(s)	248
BclI	TGATCA	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	137, 255
BfmI	CTRYAG	1 cut(s)	414
BisI	GCNGC	1 cut(s)	407
BlsI	GCNGC	1 cut(s)	408
Bme1390I	CCNGG	1 cut(s)	248
BmeT110I	CYCGRG	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	2 cut(s)	97, 152
BmrFI	CCNGG	1 cut(s)	248
BmrI	ACTGGG	1 cut(s)	12
BmsI	GCATC	1 cut(s)	262
BmuI	ACTGGG	1 cut(s)	12
BpiI	GAAGAC	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	246, 247
Bse1I	ACTGG	2 cut(s)	18, 399
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	2 cut(s)	246, 247
BseGI	GGATG	1 cut(s)	242
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	2 cut(s)	52, 140
BseNI	ACTGG	2 cut(s)	18, 399
BseXI	GCAGC	1 cut(s)	393
BshFI	GGCC	1 cut(s)	151
BshNI	GGYRCC	1 cut(s)	95
BsiHKCI	CYCGRG	1 cut(s)	153
BsmAI	GTCTC	2 cut(s)	137, 255
BsmBI	CGTCTC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	153
Bsp1407I	TGTACA	1 cut(s)	161
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	1 cut(s)	151
BspCNI	CTCAG	2 cut(s)	51, 139
BspLI	GGNNCC	2 cut(s)	97, 152
BspT107I	GGYRCC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	204
BsrGI	TGTACA	1 cut(s)	161
BsrI	ACTGG	2 cut(s)	18, 399
BssECI	CCNNGG	2 cut(s)	246, 247
BssMI	GATC	1 cut(s)	111
BssNI	GRCGYC	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	248
BstACI	GRCGYC	1 cut(s)	264
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstAUI	TGTACA	1 cut(s)	161
BstC8I	GCNNGC	2 cut(s)	387, 411
BstDEI	CTNAG	2 cut(s)	38, 126
BstF5I	GGATG	1 cut(s)	242
BstKTI	GATC	1 cut(s)	114
BstMAI	GTCTC	2 cut(s)	137, 255
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 281, 386
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	246
BstSFI	CTRYAG	1 cut(s)	414
BstV1I	GCAGC	1 cut(s)	393
BstV2I	GAAGAC	1 cut(s)	137
BstXI	CCANNNNNNTGG	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	151
BtgZI	GCGATG	1 cut(s)	218
BtsCI	GGATG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	392
Cac8I	GCNNGC	2 cut(s)	387, 411
Cfr13I	GGNCC	1 cut(s)	150
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	4 cut(s)	96, 162, 190, 228
CviAII	CATG	2 cut(s)	109, 302
CviJI	RGCY	7 cut(s)	34, 79, 151, 385, 401, 413, 419
CviKI_1	RGCY	7 cut(s)	34, 79, 151, 385, 401, 413, 419
CviQI	GTAC	4 cut(s)	96, 162, 190, 228
DdeI	CTNAG	2 cut(s)	38, 126
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
EciI	GGCGGA	1 cut(s)	86
Eco32I	GATATC	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	246
EcoRV	GATATC	1 cut(s)	220
EcoT22I	ATGCAT	1 cut(s)	110
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	2 cut(s)	112, 305
FaiI	YATR	8 cut(s)	61, 106, 110, 303, 351, 404, 416, 450
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
FatI	CATG	2 cut(s)	108, 301
FbaI	TGATCA	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	407
FokI	GGATG	1 cut(s)	229
Fsp4HI	GCNGC	1 cut(s)	407
GluI	GCNGC	1 cut(s)	407
HaeIII	GGCC	1 cut(s)	151
HgaI	GACGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	2 cut(s)	112, 305
HinfI	GANTC	2 cut(s)	344, 353
Hpy166II	GTNNAC	2 cut(s)	164, 172
Hpy188I	TCNGA	4 cut(s)	129, 260, 343, 358
Hpy188III	TCNNGA	1 cut(s)	24
Hpy8I	GTNNAC	2 cut(s)	164, 172
HpyAV	CCTTC	2 cut(s)	61, 249
HpyCH4V	TGCA	2 cut(s)	108, 409
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 281, 386
HpyF3I	CTNAG	2 cut(s)	38, 126
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	112, 305
KpnI	GGTACC	1 cut(s)	99
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	111
LpnPI	CCDG	6 cut(s)	25, 31, 153, 233, 260, 380
Lsp1109I	GCAGC	1 cut(s)	393
LweI	GCATC	1 cut(s)	262
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	4 cut(s)	39, 109, 142, 220
MluCI	AATT	4 cut(s)	55, 323, 359, 426
MnlI	CCTC	5 cut(s)	45, 45, 135, 370, 433
Mph1103I	ATGCAT	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	238
MseI	TTAA	2 cut(s)	332, 454
MspR9I	CCNGG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	3 cut(s)	272, 281, 386
NdeII	GATC	1 cut(s)	111
NlaIII	CATG	2 cut(s)	112, 305
NlaIV	GGNNCC	2 cut(s)	97, 152
NsiI	ATGCAT	1 cut(s)	110
PasI	CCCWGGG	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	238
PfeI	GAWTC	2 cut(s)	344, 353
PkrI	GCNGC	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	97, 152
PspPI	GGNCC	1 cut(s)	150
RsaI	GTAC	4 cut(s)	97, 163, 191, 229
RsaNI	GTAC	4 cut(s)	96, 162, 190, 228
SaqAI	TTAA	2 cut(s)	332, 454
SatI	GCNGC	1 cut(s)	407
Sau3AI	GATC	1 cut(s)	111
Sau96I	GGNCC	1 cut(s)	150
ScrFI	CCNGG	1 cut(s)	248
SetI	ASST	6 cut(s)	81, 127, 229, 387, 403, 415
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	414
Sse9I	AATT	4 cut(s)	55, 323, 359, 426
SsiI	CCGC	1 cut(s)	71
SspI	AATATT	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	246
TaqI	TCGA	1 cut(s)	25
TasI	AATT	4 cut(s)	55, 323, 359, 426
TatI	WGTACW	2 cut(s)	161, 189
TfiI	GAWTC	2 cut(s)	344, 353
Tru1I	TTAA	2 cut(s)	332, 454
Tru9I	TTAA	2 cut(s)	332, 454
TscAI	CASTG	1 cut(s)	399
TseI	GCWGC	1 cut(s)	406
TspDTI	ATGAA	3 cut(s)	221, 231, 335
TspRI	CASTG	1 cut(s)	399
XapI	RAATTY	1 cut(s)	55
XmnI	GAANNNNTTC	1 cut(s)	238
Zsp2I	ATGCAT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.