Rorug02G0585900
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000326
Physical Location & Seq
Reverse (-)
70885925 .. 70887079
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0585900.1

Sequence Viewer

Length: 567 bp
ATGAAGGGAGCTTCAGCAGCTATTGAGATTGGTGAGTCCAAAATCGGTTCAACACCAAGAAGCGGGGTGAACAGAGGGGCAGCGATACTCGACTTCATTCTAAGGATAATCGCCTTTCTTGGTACCTTAGCGAGTGCTATAGCTATGGGAACAACCAGGGAAAGACTTCCTTTCTTCACACAGTTCCTTCAGTTTAGGGCTGAGTATGATGATCTTCCAACATTTACGTTCTTTGTGGTTGCCAATTCCATCGTATGTGCCTATCTGATGTTTTCCCTAGCTCTTTCTATCTTCCACATCATAAGAAGCAATGCAAAGAACAGTAGAATAATCTTGATCTTCTTCGACACGGGAATGCTGGCTCTTCTGACAGCAGGTGCCTCGGCCGCCACAGCTATTGTGTACTTAGCACACAAGGGGAATGCCAAGGCAAACTGGTTCGCAATCTGTCAACAATTCAATTCCTTCTGCGAACGAATCTCTGGCTCTTTGATTGGATCTTTCGTGGCAATTGTTATTTTCGTTCTCTTGATCTTAATGTCAGCTGCCGCCCTTTCTCGGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

188

Amino Acids

20.36

Weight (kDa)

9.85

Isoelectric Point (pI)

32.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 25 - 172 1.1e-47 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 365
Acc36I ACCTGC 1 cut(s) 365
Acc65I GGTACC 1 cut(s) 122
AccB1I GGYRCC 2 cut(s) 122, 377
AciI CCGC 3 cut(s) 63, 387, 549
AclWI GGATC 1 cut(s) 505
AcoI YGGCCR 1 cut(s) 384
AcuI CTGAAG 1 cut(s) 173
AfaI GTAC 2 cut(s) 124, 404
AfiI CCNNNNNNNGG 2 cut(s) 62, 558
AgsI TTSAA 2 cut(s) 51, 460
AjnI CCWGG 1 cut(s) 155
AluBI AGCT 6 cut(s) 11, 20, 143, 281, 395, 545
AluI AGCT 6 cut(s) 11, 20, 143, 281, 395, 545
AlwI GGATC 1 cut(s) 505
AoxI GGCC 1 cut(s) 384
ApeKI GCWGC 3 cut(s) 17, 80, 545
Asp700I GAANNNNTTC 1 cut(s) 165
Asp718I GGTACC 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 44, 79
BanI GGYRCC 2 cut(s) 122, 377
BbvI GCAGC 3 cut(s) 29, 92, 532
BccI CCATC 1 cut(s) 257
BcgI CGANNNNNNTGC 2 cut(s) 363, 397
BciT130I CCWGG 1 cut(s) 157
BfaI CTAG 1 cut(s) 278
BfmI CTRYAG 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 365
BisI GCNGC 5 cut(s) 18, 81, 387, 546, 549
BlsI GCNGC 5 cut(s) 19, 82, 388, 547, 550
Bme1390I CCNGG 1 cut(s) 157
BmiI GGNNCC 2 cut(s) 124, 379
BmrFI CCNGG 1 cut(s) 157
Bpu10I CCTNAGC 1 cut(s) 127
BsaJI CCNNGG 3 cut(s) 156, 381, 426
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 558
Bse1I ACTGG 1 cut(s) 440
Bse3DI GCAATG 1 cut(s) 316
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 3 cut(s) 156, 381, 426
BseLI CCNNNNNNNGG 2 cut(s) 62, 558
BseMI GCAATG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 440
BseX3I CGGCCG 1 cut(s) 384
BseXI GCAGC 3 cut(s) 29, 92, 532
Bsh1285I CGRYCG 1 cut(s) 387
BshFI GGCC 1 cut(s) 386
BshNI GGYRCC 2 cut(s) 122, 377
BsiEI CGRYCG 1 cut(s) 387
BslI CCNNNNNNNGG 2 cut(s) 62, 558
BsmI GAATGC 2 cut(s) 360, 427
BsnI GGCC 1 cut(s) 386
Bsp143I GATC 4 cut(s) 211, 336, 497, 531
BspACI CCGC 3 cut(s) 63, 387, 549
BspANI GGCC 1 cut(s) 386
BspCNI CTCAG 1 cut(s) 193
BspLI GGNNCC 2 cut(s) 124, 379
BspMI ACCTGC 1 cut(s) 365
BspPI GGATC 1 cut(s) 505
BspQI GCTCTTC 1 cut(s) 369
BspT107I GGYRCC 2 cut(s) 122, 377
BsrDI GCAATG 1 cut(s) 316
BsrI ACTGG 1 cut(s) 440
BssECI CCNNGG 3 cut(s) 156, 381, 426
BssMI GATC 4 cut(s) 211, 336, 497, 531
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 1 cut(s) 157
Bst4CI ACNGT 2 cut(s) 183, 323
Bst6I CTCTTC 1 cut(s) 369
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 4 cut(s) 101, 127, 201, 406
BstKTI GATC 4 cut(s) 214, 339, 500, 534
BstMBI GATC 4 cut(s) 211, 336, 497, 531
BstMCI CGRYCG 1 cut(s) 387
BstMWI GCNNNNNNNGC 3 cut(s) 17, 386, 392
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 155
BstSFI CTRYAG 1 cut(s) 138
BstV1I GCAGC 3 cut(s) 29, 92, 532
BstX2I RGATCY 1 cut(s) 497
BstYI RGATCY 1 cut(s) 497
BstZI CGGCCG 1 cut(s) 384
BsuRI GGCC 1 cut(s) 386
BveI ACCTGC 1 cut(s) 365
Cac8I GCNNGC 1 cut(s) 360
Csp6I GTAC 2 cut(s) 123, 403
CspCI CAANNNNNGTGG 2 cut(s) 379, 414
CviQI GTAC 2 cut(s) 123, 403
DdeI CTNAG 4 cut(s) 101, 127, 201, 406
DpnI GATC 4 cut(s) 213, 338, 499, 533
DpnII GATC 4 cut(s) 211, 336, 497, 531
EaeI YGGCCR 1 cut(s) 384
EagI CGGCCG 1 cut(s) 384
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
EclXI CGGCCG 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 426
Eco52I CGGCCG 1 cut(s) 384
Eco57I CTGAAG 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 155
EcoT14I CCWWGG 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 426
FaiI YATR 5 cut(s) 140, 146, 207, 256, 302
FalI AAGNNNNNCTT 2 cut(s) 154, 186
FauI CCCGC 1 cut(s) 56
Fnu4HI GCNGC 5 cut(s) 18, 81, 387, 546, 549
Fsp4HI GCNGC 5 cut(s) 18, 81, 387, 546, 549
FspBI CTAG 1 cut(s) 278
GluI GCNGC 5 cut(s) 18, 81, 387, 546, 549
HaeIII GGCC 1 cut(s) 386
HincII GTYRAC 1 cut(s) 452
HindII GTYRAC 1 cut(s) 452
HinfI GANTC 2 cut(s) 35, 477
HphI GGTGA 2 cut(s) 44, 79
Hpy166II GTNNAC 3 cut(s) 70, 403, 452
Hpy188I TCNGA 2 cut(s) 267, 369
Hpy188III TCNNGA 2 cut(s) 334, 529
Hpy8I GTNNAC 3 cut(s) 70, 403, 452
HpyAV CCTTC 2 cut(s) 197, 475
HpyCH4III ACNGT 2 cut(s) 183, 323
HpyCH4IV ACGT 1 cut(s) 227
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 386, 392
HpyF3I CTNAG 4 cut(s) 101, 127, 201, 406
HpySE526I ACGT 1 cut(s) 227
KpnI GGTACC 1 cut(s) 126
Kzo9I GATC 4 cut(s) 211, 336, 497, 531
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 6 cut(s) 142, 169, 344, 360, 421, 468
Lsp1109I GCAGC 3 cut(s) 29, 92, 532
MaeI CTAG 1 cut(s) 278
MaeII ACGT 1 cut(s) 227
MalI GATC 4 cut(s) 213, 338, 499, 533
MboI GATC 4 cut(s) 211, 336, 497, 531
MboII GAAGA 6 cut(s) 166, 206, 283, 331, 334, 356
MfeI CAATTG 1 cut(s) 510
MflI RGATCY 1 cut(s) 497
MluCI AATT 4 cut(s) 244, 455, 460, 510
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 242
MnlI CCTC 2 cut(s) 68, 391
MroXI GAANNNNTTC 1 cut(s) 165
MseI TTAA 1 cut(s) 536
MslI CAYNNNNRTG 1 cut(s) 353
MspA1I CMGCKG 1 cut(s) 545
MspR9I CCNGG 1 cut(s) 157
MunI CAATTG 1 cut(s) 510
Mva1269I GAATGC 2 cut(s) 360, 427
MvaI CCWGG 1 cut(s) 157
MwoI GCNNNNNNNGC 3 cut(s) 17, 386, 392
NdeII GATC 4 cut(s) 211, 336, 497, 531
NlaIV GGNNCC 2 cut(s) 124, 379
NmeAIII GCCGAG 2 cut(s) 362, 538
PaqCI CACCTGC 1 cut(s) 365
PciSI GCTCTTC 1 cut(s) 369
PctI GAATGC 2 cut(s) 360, 427
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 1 cut(s) 477
PkrI GCNGC 5 cut(s) 19, 82, 388, 547, 550
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 2 cut(s) 124, 379
PsuI RGATCY 1 cut(s) 497
PvuII CAGCTG 1 cut(s) 545
RsaI GTAC 2 cut(s) 124, 404
RsaNI GTAC 2 cut(s) 123, 403
RseI CAYNNNNRTG 1 cut(s) 353
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 1 cut(s) 536
SatI GCNGC 5 cut(s) 18, 81, 387, 546, 549
Sau3AI GATC 4 cut(s) 211, 336, 497, 531
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 157
SetI ASST 9 cut(s) 13, 22, 128, 145, 230, 283, 379, 397, 547
SfcI CTRYAG 1 cut(s) 138
SmiMI CAYNNNNRTG 1 cut(s) 353
Sse9I AATT 4 cut(s) 244, 455, 460, 510
SsiI CCGC 3 cut(s) 63, 387, 549
SspMI CTAG 1 cut(s) 278
StyD4I CCNGG 1 cut(s) 155
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 2 cut(s) 183, 323
TaiI ACGT 1 cut(s) 230
TaqI TCGA 2 cut(s) 90, 345
TasI AATT 4 cut(s) 244, 455, 460, 510
TatI WGTACW 1 cut(s) 402
TauI GCSGC 2 cut(s) 389, 551
TfiI GAWTC 1 cut(s) 477
Tru1I TTAA 1 cut(s) 536
Tru9I TTAA 1 cut(s) 536
TseI GCWGC 3 cut(s) 17, 80, 545
TspDTI ATGAA 2 cut(s) 17, 85
XmnI GAANNNNTTC 1 cut(s) 165
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.