MADS-box protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 431, 561, 998 |
| AclI | AACGTT | 1 cut(s) | 534 |
| AclWI | GGATC | 5 cut(s) | 393, 483, 492, 1138, 1173 |
| AcoI | YGGCCR | 1 cut(s) | 919 |
| AcsI | RAATTY | 3 cut(s) | 113, 140, 616 |
| AfaI | GTAC | 2 cut(s) | 794, 971 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 104, 797, 1127 |
| AgsI | TTSAA | 6 cut(s) | 56, 811, 1193, 1252, 1264, 1307 |
| AjiI | CACGTC | 1 cut(s) | 284 |
| AjnI | CCWGG | 1 cut(s) | 158 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 87, 119 |
| AluBI | AGCT | 5 cut(s) | 500, 608, 697, 1040, 1183 |
| AluI | AGCT | 5 cut(s) | 500, 608, 697, 1040, 1183 |
| Alw21I | GWGCWC | 4 cut(s) | 310, 722, 829, 1089 |
| Alw26I | GTCTC | 3 cut(s) | 813, 1110, 1201 |
| Alw44I | GTGCAC | 1 cut(s) | 306 |
| AlwI | GGATC | 5 cut(s) | 393, 483, 492, 1138, 1173 |
| Ama87I | CYCGRG | 1 cut(s) | 828 |
| AoxI | GGCC | 1 cut(s) | 919 |
| ApaLI | GTGCAC | 1 cut(s) | 306 |
| ApeKI | GCWGC | 4 cut(s) | 190, 497, 1022, 1232 |
| ApoI | RAATTY | 3 cut(s) | 113, 140, 616 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 27 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1302 |
| AsuHPI | GGTGA | 3 cut(s) | 349, 737, 925 |
| AvaI | CYCGRG | 1 cut(s) | 828 |
| BaeGI | GKGCMC | 1 cut(s) | 310 |
| BalI | TGGCCA | 1 cut(s) | 921 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 953, 985 |
| BauI | CACGAG | 1 cut(s) | 309 |
| Bbv12I | GWGCWC | 4 cut(s) | 310, 722, 829, 1089 |
| BbvCI | CCTCAGC | 1 cut(s) | 1031 |
| BbvI | GCAGC | 4 cut(s) | 202, 509, 1009, 1244 |
| BccI | CCATC | 5 cut(s) | 203, 460, 590, 766, 1043 |
| BceAI | ACGGC | 1 cut(s) | 775 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 113, 147, 179, 213, 300, 334 |
| BciT130I | CCWGG | 1 cut(s) | 160 |
| BclI | TGATCA | 2 cut(s) | 1146, 1285 |
| BcoDI | GTCTC | 3 cut(s) | 813, 1110, 1201 |
| BfaI | CTAG | 1 cut(s) | 816 |
| BisI | GCNGC | 4 cut(s) | 191, 498, 1023, 1233 |
| BlsI | GCNGC | 4 cut(s) | 192, 499, 1024, 1234 |
| Bme1390I | CCNGG | 1 cut(s) | 160 |
| BmeT110I | CYCGRG | 1 cut(s) | 828 |
| BmgBI | CACGTC | 1 cut(s) | 284 |
| BmiI | GGNNCC | 1 cut(s) | 85 |
| BmrFI | CCNGG | 1 cut(s) | 160 |
| BmrI | ACTGGG | 1 cut(s) | 870 |
| BmsI | GCATC | 1 cut(s) | 121 |
| BmuI | ACTGGG | 1 cut(s) | 870 |
| Bpu10I | CCTNAGC | 2 cut(s) | 721, 1031 |
| BsaBI | GATNNNNATC | 1 cut(s) | 390 |
| BsaJI | CCNNGG | 1 cut(s) | 1121 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 797, 827 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 104, 797, 1127 |
| Bse1I | ACTGG | 1 cut(s) | 865 |
| Bse3DI | GCAATG | 4 cut(s) | 328, 840, 1032, 1207 |
| Bse8I | GATNNNNATC | 1 cut(s) | 390 |
| BseBI | CCWGG | 1 cut(s) | 160 |
| BseDI | CCNNGG | 1 cut(s) | 1121 |
| BseGI | GGATG | 4 cut(s) | 242, 394, 906, 1162 |
| BseJI | GATNNNNATC | 1 cut(s) | 390 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 104, 797, 1127 |
| BseMI | GCAATG | 4 cut(s) | 328, 840, 1032, 1207 |
| BseMII | CTCAG | 6 cut(s) | 141, 532, 735, 1022, 1187, 1341 |
| BseNI | ACTGG | 1 cut(s) | 865 |
| BseRI | GAGGAG | 7 cut(s) | 32, 35, 38, 41, 44, 47, 50 |
| BseSI | GKGCMC | 1 cut(s) | 310 |
| BseXI | GCAGC | 4 cut(s) | 202, 509, 1009, 1244 |
| BsgI | GTGCAG | 2 cut(s) | 516, 1251 |
| BshFI | GGCC | 1 cut(s) | 921 |
| BsiHKAI | GWGCWC | 4 cut(s) | 310, 722, 829, 1089 |
| BsiHKCI | CYCGRG | 1 cut(s) | 828 |
| BslFI | GGGAC | 1 cut(s) | 989 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 104, 797, 1127 |
| BsmAI | GTCTC | 3 cut(s) | 813, 1110, 1201 |
| BsmFI | GGGAC | 1 cut(s) | 989 |
| BsnI | GGCC | 1 cut(s) | 921 |
| BsoBI | CYCGRG | 1 cut(s) | 828 |
| Bsp1286I | GDGCHC | 4 cut(s) | 310, 722, 829, 1089 |
| Bsp1407I | TGTACA | 1 cut(s) | 969 |
| Bsp143I | GATC | 8 cut(s) | 385, 475, 484, 1130, 1146, 1165, 1243, 1285 |
| BspACI | CCGC | 3 cut(s) | 431, 561, 998 |
| BspANI | GGCC | 1 cut(s) | 921 |
| BspCNI | CTCAG | 6 cut(s) | 142, 531, 734, 1023, 1188, 1342 |
| BspLI | GGNNCC | 1 cut(s) | 85 |
| BspPI | GGATC | 5 cut(s) | 393, 483, 492, 1138, 1173 |
| BsrDI | GCAATG | 4 cut(s) | 328, 840, 1032, 1207 |
| BsrGI | TGTACA | 1 cut(s) | 969 |
| BsrI | ACTGG | 1 cut(s) | 865 |
| BssECI | CCNNGG | 1 cut(s) | 1121 |
| BssMI | GATC | 8 cut(s) | 385, 475, 484, 1130, 1146, 1165, 1243, 1285 |
| BssSI | CACGAG | 1 cut(s) | 309 |
| Bst2BI | CACGAG | 1 cut(s) | 309 |
| Bst2UI | CCWGG | 1 cut(s) | 160 |
| Bst4CI | ACNGT | 6 cut(s) | 7, 750, 824, 871, 890, 1283 |
| BstAUI | TGTACA | 1 cut(s) | 969 |
| BstC8I | GCNNGC | 2 cut(s) | 433, 854 |
| BstDEI | CTNAG | 6 cut(s) | 150, 518, 721, 1031, 1196, 1350 |
| BstDSI | CCRYGG | 1 cut(s) | 1121 |
| BstF5I | GGATG | 4 cut(s) | 242, 394, 906, 1162 |
| BstKTI | GATC | 8 cut(s) | 388, 478, 487, 1133, 1149, 1168, 1246, 1288 |
| BstMAI | GTCTC | 3 cut(s) | 813, 1110, 1201 |
| BstMBI | GATC | 8 cut(s) | 385, 475, 484, 1130, 1146, 1165, 1243, 1285 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 432 |
| BstNI | CCWGG | 1 cut(s) | 160 |
| BstSCI | CCNGG | 1 cut(s) | 158 |
| BstSLI | GKGCMC | 1 cut(s) | 310 |
| BstV1I | GCAGC | 4 cut(s) | 202, 509, 1009, 1244 |
| BstX2I | RGATCY | 1 cut(s) | 1130 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 334 |
| BstYI | RGATCY | 1 cut(s) | 1130 |
| BsuRI | GGCC | 1 cut(s) | 921 |
| BtgI | CCRYGG | 1 cut(s) | 1121 |
| BtgZI | GCGATG | 1 cut(s) | 1228 |
| BtrI | CACGTC | 1 cut(s) | 284 |
| BtsCI | GGATG | 4 cut(s) | 242, 394, 906, 1162 |
| BtsIMutI | CAGTG | 4 cut(s) | 12, 829, 858, 1288 |
| Cac8I | GCNNGC | 2 cut(s) | 433, 854 |
| CseI | GACGC | 2 cut(s) | 182, 768 |
| Csp6I | GTAC | 2 cut(s) | 793, 970 |
| CviAII | CATG | 2 cut(s) | 64, 910 |
| CviQI | GTAC | 2 cut(s) | 793, 970 |
| DdeI | CTNAG | 6 cut(s) | 150, 518, 721, 1031, 1196, 1350 |
| DpnI | GATC | 8 cut(s) | 387, 477, 486, 1132, 1148, 1167, 1245, 1287 |
| DpnII | GATC | 8 cut(s) | 385, 475, 484, 1130, 1146, 1165, 1243, 1285 |
| EaeI | YGGCCR | 1 cut(s) | 919 |
| Eco32I | GATATC | 1 cut(s) | 1270 |
| Eco88I | CYCGRG | 1 cut(s) | 828 |
| EcoRII | CCWGG | 1 cut(s) | 158 |
| EcoRV | GATATC | 1 cut(s) | 1270 |
| FaeI | CATG | 2 cut(s) | 67, 913 |
| FaqI | GGGAC | 1 cut(s) | 989 |
| FatI | CATG | 2 cut(s) | 63, 909 |
| FauI | CCCGC | 1 cut(s) | 424 |
| FbaI | TGATCA | 2 cut(s) | 1146, 1285 |
| Fnu4HI | GCNGC | 4 cut(s) | 191, 498, 1023, 1233 |
| FokI | GGATG | 4 cut(s) | 249, 381, 913, 1169 |
| Fsp4HI | GCNGC | 4 cut(s) | 191, 498, 1023, 1233 |
| FspBI | CTAG | 1 cut(s) | 816 |
| GluI | GCNGC | 4 cut(s) | 191, 498, 1023, 1233 |
| HaeIII | GGCC | 1 cut(s) | 921 |
| HgaI | GACGC | 2 cut(s) | 182, 768 |
| Hin1II | CATG | 2 cut(s) | 67, 913 |
| HincII | GTYRAC | 1 cut(s) | 583 |
| HindII | GTYRAC | 1 cut(s) | 583 |
| HinfI | GANTC | 6 cut(s) | 71, 119, 165, 671, 877, 1355 |
| HphI | GGTGA | 3 cut(s) | 349, 737, 925 |
| Hpy166II | GTNNAC | 6 cut(s) | 61, 308, 583, 867, 970, 1220 |
| Hpy188I | TCNGA | 8 cut(s) | 76, 124, 676, 1110, 1170, 1297, 1351, 1360 |
| Hpy188III | TCNNGA | 8 cut(s) | 354, 482, 506, 816, 830, 953, 1241, 1307 |
| Hpy8I | GTNNAC | 6 cut(s) | 61, 308, 583, 867, 970, 1220 |
| Hpy99I | CGWCG | 4 cut(s) | 198, 201, 231, 894 |
| HpyAV | CCTTC | 6 cut(s) | 71, 308, 334, 1007, 1075, 1156 |
| HpyCH4III | ACNGT | 6 cut(s) | 7, 750, 824, 871, 890, 1283 |
| HpyCH4IV | ACGT | 3 cut(s) | 283, 534, 1222 |
| HpyCH4V | TGCA | 6 cut(s) | 190, 308, 321, 497, 1025, 1232 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 432 |
| HpyF3I | CTNAG | 6 cut(s) | 150, 518, 721, 1031, 1196, 1350 |
| HpySE526I | ACGT | 3 cut(s) | 283, 534, 1222 |
| Hsp92II | CATG | 2 cut(s) | 67, 913 |
| Ksp22I | TGATCA | 2 cut(s) | 1146, 1285 |
| Kzo9I | GATC | 8 cut(s) | 385, 475, 484, 1130, 1146, 1165, 1243, 1285 |
| LmnI | GCTCC | 2 cut(s) | 1084, 1180 |
| Lsp1109I | GCAGC | 4 cut(s) | 202, 509, 1009, 1244 |
| LweI | GCATC | 1 cut(s) | 121 |
| MaeI | CTAG | 1 cut(s) | 816 |
| MaeII | ACGT | 3 cut(s) | 283, 534, 1222 |
| MaeIII | GTNAC | 7 cut(s) | 239, 367, 406, 650, 953, 1003, 1066 |
| MalI | GATC | 8 cut(s) | 387, 477, 486, 1132, 1148, 1167, 1245, 1287 |
| MboI | GATC | 8 cut(s) | 385, 475, 484, 1130, 1146, 1165, 1243, 1285 |
| MboII | GAAGA | 6 cut(s) | 137, 140, 467, 563, 980, 1330 |
| MfeI | CAATTG | 1 cut(s) | 1247 |
| MflI | RGATCY | 1 cut(s) | 1130 |
| MhlI | GDGCHC | 4 cut(s) | 310, 722, 829, 1089 |
| MlsI | TGGCCA | 1 cut(s) | 921 |
| MluCI | AATT | 7 cut(s) | 113, 140, 470, 616, 1173, 1247, 1331 |
| MluNI | TGGCCA | 1 cut(s) | 921 |
| MlyI | GAGTC | 2 cut(s) | 128, 174 |
| Mox20I | TGGCCA | 1 cut(s) | 921 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1302 |
| MscI | TGGCCA | 1 cut(s) | 921 |
| MseI | TTAA | 1 cut(s) | 1043 |
| MslI | CAYNNNNRTG | 2 cut(s) | 800, 1100 |
| Msp20I | TGGCCA | 1 cut(s) | 921 |
| MspA1I | CMGCKG | 1 cut(s) | 431 |
| MspR9I | CCNGG | 1 cut(s) | 160 |
| MunI | CAATTG | 1 cut(s) | 1247 |
| MvaI | CCWGG | 1 cut(s) | 160 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 432 |
| NdeII | GATC | 8 cut(s) | 385, 475, 484, 1130, 1146, 1165, 1243, 1285 |
| NlaIII | CATG | 2 cut(s) | 67, 913 |
| NlaIV | GGNNCC | 1 cut(s) | 85 |
| NmuCI | GTSAC | 2 cut(s) | 953, 1003 |
| PaeR7I | CTCGAG | 1 cut(s) | 828 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1302 |
| PfeI | GAWTC | 4 cut(s) | 71, 671, 877, 1355 |
| PkrI | GCNGC | 4 cut(s) | 192, 499, 1024, 1234 |
| PleI | GAGTC | 2 cut(s) | 127, 173 |
| PpsI | GAGTC | 2 cut(s) | 127, 173 |
| Psp1406I | AACGTT | 1 cut(s) | 534 |
| Psp6I | CCWGG | 1 cut(s) | 158 |
| PspGI | CCWGG | 1 cut(s) | 158 |
| PspN4I | GGNNCC | 1 cut(s) | 85 |
| PsuI | RGATCY | 1 cut(s) | 1130 |
| RsaI | GTAC | 2 cut(s) | 794, 971 |
| RsaNI | GTAC | 2 cut(s) | 793, 970 |
| RseI | CAYNNNNRTG | 2 cut(s) | 800, 1100 |
| SaqAI | TTAA | 1 cut(s) | 1043 |
| SatI | GCNGC | 4 cut(s) | 191, 498, 1023, 1233 |
| Sau3AI | GATC | 8 cut(s) | 385, 475, 484, 1130, 1146, 1165, 1243, 1285 |
| SchI | GAGTC | 2 cut(s) | 128, 174 |
| ScrFI | CCNGG | 1 cut(s) | 160 |
| SduI | GDGCHC | 4 cut(s) | 310, 722, 829, 1089 |
| SfaNI | GCATC | 1 cut(s) | 121 |
| Sfr274I | CTCGAG | 1 cut(s) | 828 |
| SlaI | CTCGAG | 1 cut(s) | 828 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 800, 1100 |
| SmlI | CTYRAG | 1 cut(s) | 828 |
| SmoI | CTYRAG | 1 cut(s) | 828 |
| Sse9I | AATT | 7 cut(s) | 113, 140, 470, 616, 1173, 1247, 1331 |
| SsiI | CCGC | 3 cut(s) | 431, 561, 998 |
| SspMI | CTAG | 1 cut(s) | 816 |
| StyD4I | CCNGG | 1 cut(s) | 158 |
| TaaI | ACNGT | 6 cut(s) | 7, 750, 824, 871, 890, 1283 |
| TaiI | ACGT | 3 cut(s) | 286, 537, 1225 |
| TaqI | TCGA | 5 cut(s) | 199, 505, 829, 896, 938 |
| TasI | AATT | 7 cut(s) | 113, 140, 470, 616, 1173, 1247, 1331 |
| TatI | WGTACW | 1 cut(s) | 969 |
| TfiI | GAWTC | 4 cut(s) | 71, 671, 877, 1355 |
| Tru1I | TTAA | 1 cut(s) | 1043 |
| Tru9I | TTAA | 1 cut(s) | 1043 |
| TscAI | CASTG | 4 cut(s) | 12, 829, 865, 1288 |
| TseFI | GTSAC | 2 cut(s) | 953, 1003 |
| TseI | GCWGC | 4 cut(s) | 190, 497, 1022, 1232 |
| Tsp45I | GTSAC | 2 cut(s) | 953, 1003 |
| TspDTI | ATGAA | 3 cut(s) | 514, 869, 917 |
| TspGWI | ACGGA | 2 cut(s) | 170, 1110 |
| TspRI | CASTG | 4 cut(s) | 12, 829, 865, 1288 |
| VneI | GTGCAC | 1 cut(s) | 306 |
| XapI | RAATTY | 3 cut(s) | 113, 140, 616 |
| XbaI | TCTAGA | 1 cut(s) | 815 |
| XhoI | CTCGAG | 1 cut(s) | 828 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1302 |
| XspI | CTAG | 1 cut(s) | 816 |