Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Reverse (-)

33768837 .. 33769496

Gene Structure 660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002417

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGACCCTCAAAGAAACATACAAGAACTATCGTCCAGTAAGAGTGATCGTAAAAAGGTTCGGGATCGAAAGAAGAATTTAATCAAGAAAGCCGAGGAGCTTTCAAAGCTTTGTGGTGTTGATGTATGCTTGATCCTTTACCAACGTCAAAGTACTATAGCAGAGACTTGGCCCCAAGATCCTGCGCAAGTCAAACGCATTATCACTGGGTACAAGGCAAACCCGGCAATCAGAGATGCTAGCATTCCTTCATCGGAGACAAAGGGTTTGGAAGAAACCAAGCCTCGAAAGTCAGATGGTGGCCGTGAGAATGTTATTAATAATTCCGATGAGGAAAGGGAGATGCTGTACCCGACATGGGATGATCGATTAGATTACTGTTCTGAGGACGAATTGTTTAGACTGGTTGCTTCCTTGGATGCAAAGCTAGAAGCCTCAACAAAGAGGATTGATTCACTATCGATGAAAAACTGTGGCGGTTTTGTGACCCCAAAAAACAAAAGCAGCAAAGCTGGTGCAATTGATCATCATGACAAGGTGAATTCGAACTTGAACTTGGTCCCTTTTCGTGAGATTAATGATCTTGATGACCCAAGATCATCCAGAAACTACAGTAGTATTCCAACCATGCAATTCATGAGGTCTTCTTATATGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

220

Amino Acids

24.96

Weight (kDa)

8.57

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	23 - 50	1.7e-09	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	186
AciI	CCGC	1 cut(s)	477
AclWI	GGATC	3 cut(s)	72, 127, 173
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	2 cut(s)	76, 541
AfaI	GTAC	3 cut(s)	154, 212, 350
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	2 cut(s)	105, 553
AjuI	GAANNNNNNNTTGG	2 cut(s)	539, 571
AluBI	AGCT	4 cut(s)	100, 109, 427, 512
AluI	AGCT	4 cut(s)	100, 109, 427, 512
Alw26I	GTCTC	2 cut(s)	158, 251
AlwI	GGATC	3 cut(s)	72, 127, 173
AoxI	GGCC	2 cut(s)	170, 301
ApeKI	GCWGC	1 cut(s)	504
ApoI	RAATTY	2 cut(s)	76, 541
ArsI	GACNNNNNNTTYG	2 cut(s)	250, 282
AseI	ATTAAT	2 cut(s)	318, 576
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	3 cut(s)	4, 171, 559
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	550
AsuII	TTCGAA	1 cut(s)	545
AsuNHI	GCTAGC	1 cut(s)	239
AvaII	GGWCC	2 cut(s)	4, 559
BbsI	GAAGAC	1 cut(s)	636
BbvI	GCAGC	1 cut(s)	516
BccI	CCATC	1 cut(s)	290
BceAI	ACGGC	1 cut(s)	288
BclI	TGATCA	1 cut(s)	523
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	2 cut(s)	158, 251
BfaI	CTAG	2 cut(s)	240, 428
BfmI	CTRYAG	2 cut(s)	156, 610
BisI	GCNGC	1 cut(s)	505
BlsI	GCNGC	1 cut(s)	506
BmcAI	AGTACT	1 cut(s)	154
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	2 cut(s)	4, 559
BmgT120I	GGNCC	3 cut(s)	4, 171, 559
BmiI	GGNNCC	3 cut(s)	6, 173, 561
BmrFI	CCNGG	1 cut(s)	224
BmrI	ACTGGG	1 cut(s)	216
BmsI	GCATC	3 cut(s)	226, 333, 409
BmtI	GCTAGC	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	216
BpiI	GAAGAC	1 cut(s)	636
Bpu14I	TTCGAA	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	224
Bsa29I	ATCGAT	2 cut(s)	367, 461
BsaJI	CCNNGG	2 cut(s)	93, 414
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse1I	ACTGG	3 cut(s)	36, 211, 408
BseCI	ATCGAT	2 cut(s)	367, 461
BseDI	CCNNGG	2 cut(s)	93, 414
BseGI	GGATG	3 cut(s)	367, 424, 599
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	3 cut(s)	36, 211, 408
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	516
BshFI	GGCC	2 cut(s)	172, 303
BshVI	ATCGAT	2 cut(s)	367, 461
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	545
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	2 cut(s)	158, 251
BsmFI	GGGAC	1 cut(s)	545
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	2 cut(s)	172, 303
Bsp119I	TTCGAA	1 cut(s)	545
Bsp143I	GATC	8 cut(s)	46, 64, 132, 178, 364, 523, 580, 596
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	2 cut(s)	172, 303
BspCNI	CTCAG	1 cut(s)	376
BspDI	ATCGAT	2 cut(s)	367, 461
BspHI	TCATGA	2 cut(s)	529, 636
BspLI	GGNNCC	3 cut(s)	6, 173, 561
BspOI	GCTAGC	1 cut(s)	243
BspPI	GGATC	3 cut(s)	72, 127, 173
BspT104I	TTCGAA	1 cut(s)	545
BsrI	ACTGG	3 cut(s)	36, 211, 408
BssECI	CCNNGG	2 cut(s)	93, 414
BssMI	GATC	8 cut(s)	46, 64, 132, 178, 364, 523, 580, 596
BssT1I	CCWWGG	1 cut(s)	414
Bst4CI	ACNGT	3 cut(s)	380, 473, 614
BstBI	TTCGAA	1 cut(s)	545
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	384
BstF5I	GGATG	3 cut(s)	367, 424, 599
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	8 cut(s)	49, 67, 135, 181, 367, 526, 583, 599
BstMAI	GTCTC	2 cut(s)	158, 251
BstMBI	GATC	8 cut(s)	46, 64, 132, 178, 364, 523, 580, 596
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 224
BstSCI	CCNGG	1 cut(s)	222
BstSFI	CTRYAG	2 cut(s)	156, 610
BstV1I	GCAGC	1 cut(s)	516
BstV2I	GAAGAC	1 cut(s)	636
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
Bsu15I	ATCGAT	2 cut(s)	367, 461
BsuRI	GGCC	2 cut(s)	172, 303
BsuTUI	ATCGAT	2 cut(s)	367, 461
BtsCI	GGATG	3 cut(s)	367, 424, 599
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	241
CciI	TCATGA	2 cut(s)	529, 636
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	3 cut(s)	4, 171, 559
ClaI	ATCGAT	2 cut(s)	367, 461
Csp6I	GTAC	3 cut(s)	153, 211, 349
CviAII	CATG	4 cut(s)	357, 530, 628, 637
CviJI	RGCY	9 cut(s)	92, 100, 109, 172, 283, 303, 427, 434, 512
CviKI_1	RGCY	9 cut(s)	92, 100, 109, 172, 283, 303, 427, 434, 512
CviQI	GTAC	3 cut(s)	153, 211, 349
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	8 cut(s)	48, 66, 134, 180, 366, 525, 582, 598
DpnII	GATC	8 cut(s)	46, 64, 132, 178, 364, 523, 580, 596
EaeI	YGGCCR	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	414
Eco47I	GGWCC	2 cut(s)	4, 559
EcoRI	GAATTC	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	4 cut(s)	360, 533, 631, 640
FaiI	YATR	9 cut(s)	20, 127, 158, 358, 531, 629, 638, 651, 653
FaqI	GGGAC	1 cut(s)	545
FatI	CATG	4 cut(s)	356, 529, 627, 636
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	1 cut(s)	505
FokI	GGATG	3 cut(s)	374, 431, 586
Fsp4HI	GCNGC	1 cut(s)	505
FspBI	CTAG	2 cut(s)	240, 428
FspI	TGCGCA	1 cut(s)	186
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	505
HaeIII	GGCC	2 cut(s)	172, 303
HapII	CCGG	1 cut(s)	224
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	4 cut(s)	360, 533, 631, 640
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	1 cut(s)	452
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	1 cut(s)	550
Hpy188I	TCNGA	5 cut(s)	233, 256, 295, 328, 385
Hpy188III	TCNNGA	7 cut(s)	62, 85, 530, 569, 584, 603, 637
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	3 cut(s)	380, 473, 614
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	4 cut(s)	422, 518, 631, 655
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 224
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	4 cut(s)	360, 533, 631, 640
HspAI	GCGC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	8 cut(s)	46, 64, 132, 178, 364, 523, 580, 596
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	7 cut(s)	49, 192, 195, 237, 389, 498, 616
Lsp1109I	GCAGC	1 cut(s)	516
LweI	GCATC	3 cut(s)	226, 333, 409
MaeI	CTAG	2 cut(s)	240, 428
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	8 cut(s)	48, 66, 134, 180, 366, 525, 582, 598
MboI	GATC	8 cut(s)	46, 64, 132, 178, 364, 523, 580, 596
MboII	GAAGA	3 cut(s)	85, 284, 636
MfeI	CAATTG	1 cut(s)	519
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	6 cut(s)	76, 322, 392, 519, 541, 632
MmeI	TCCRAC	1 cut(s)	647
MnlI	CCTC	8 cut(s)	18, 88, 294, 325, 379, 438, 445, 633
MseI	TTAA	3 cut(s)	80, 318, 576
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	224
MunI	CAATTG	1 cut(s)	519
Mva1269I	GAATGC	1 cut(s)	243
MwoI	GCNNNNNNNGC	2 cut(s)	106, 224
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	8 cut(s)	46, 64, 132, 178, 364, 523, 580, 596
NheI	GCTAGC	1 cut(s)	239
NlaIII	CATG	4 cut(s)	360, 533, 631, 640
NlaIV	GGNNCC	3 cut(s)	6, 173, 561
NmeAIII	GCCGAG	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	484
NsbI	TGCGCA	1 cut(s)	186
NspV	TTCGAA	1 cut(s)	545
PagI	TCATGA	2 cut(s)	529, 636
PctI	GAATGC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	452
PkrI	GCNGC	1 cut(s)	506
PshBI	ATTAAT	2 cut(s)	318, 576
PspN4I	GGNNCC	3 cut(s)	6, 173, 561
PspPI	GGNCC	3 cut(s)	4, 171, 559
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	3 cut(s)	154, 212, 350
RsaNI	GTAC	3 cut(s)	153, 211, 349
SaqAI	TTAA	3 cut(s)	80, 318, 576
SatI	GCNGC	1 cut(s)	505
Sau3AI	GATC	8 cut(s)	46, 64, 132, 178, 364, 523, 580, 596
Sau96I	GGNCC	3 cut(s)	4, 171, 559
ScaI	AGTACT	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	224
SetI	ASST	8 cut(s)	60, 102, 111, 148, 429, 514, 540, 644
SfaNI	GCATC	3 cut(s)	226, 333, 409
SfcI	CTRYAG	2 cut(s)	156, 610
SfuI	TTCGAA	1 cut(s)	545
SinI	GGWCC	2 cut(s)	4, 559
Sse9I	AATT	6 cut(s)	76, 322, 392, 519, 541, 632
SsiI	CCGC	1 cut(s)	477
SspMI	CTAG	2 cut(s)	240, 428
StyD4I	CCNGG	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	3 cut(s)	380, 473, 614
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	5 cut(s)	67, 286, 367, 461, 545
TasI	AATT	6 cut(s)	76, 322, 392, 519, 541, 632
TatI	WGTACW	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	3 cut(s)	80, 318, 576
Tru9I	TTAA	3 cut(s)	80, 318, 576
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	1 cut(s)	504
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	3 cut(s)	240, 479, 625
TspRI	CASTG	1 cut(s)	211
VpaK11BI	GGWCC	2 cut(s)	4, 559
VspI	ATTAAT	2 cut(s)	318, 576
XapI	RAATTY	2 cut(s)	76, 541
XspI	CTAG	2 cut(s)	240, 428
ZrmI	AGTACT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.