MADS-box protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 552 |
| Acc36I | ACCTGC | 1 cut(s) | 1048 |
| AccB1I | GGYRCC | 1 cut(s) | 469 |
| AciI | CCGC | 5 cut(s) | 123, 373, 952, 1116, 1125 |
| AclWI | GGATC | 2 cut(s) | 432, 719 |
| AcoI | YGGCCR | 1 cut(s) | 194 |
| AcsI | RAATTY | 2 cut(s) | 233, 676 |
| AfaI | GTAC | 3 cut(s) | 356, 414, 851 |
| AfeI | AGCGCT | 1 cut(s) | 1028 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 211, 330, 364, 701, 958, 976, 1107 |
| AflIII | ACRYGT | 1 cut(s) | 415 |
| AgsI | TTSAA | 5 cut(s) | 114, 437, 659, 676, 790 |
| AhlI | ACTAGT | 1 cut(s) | 985 |
| AjnI | CCWGG | 2 cut(s) | 191, 969 |
| AluBI | AGCT | 6 cut(s) | 101, 241, 409, 526, 588, 642 |
| AluI | AGCT | 6 cut(s) | 101, 241, 409, 526, 588, 642 |
| Alw21I | GWGCWC | 1 cut(s) | 716 |
| Alw26I | GTCTC | 1 cut(s) | 759 |
| AlwI | GGATC | 2 cut(s) | 432, 719 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1040 |
| Aor51HI | AGCGCT | 1 cut(s) | 1028 |
| AoxI | GGCC | 6 cut(s) | 4, 151, 194, 300, 348, 967 |
| ApeKI | GCWGC | 3 cut(s) | 484, 1024, 1029 |
| ApoI | RAATTY | 2 cut(s) | 233, 676 |
| AspLEI | GCGC | 3 cut(s) | 553, 951, 1029 |
| AspS9I | GGNCC | 3 cut(s) | 4, 152, 574 |
| AsuC2I | CCSGG | 1 cut(s) | 442 |
| AsuHPI | GGTGA | 1 cut(s) | 575 |
| AvaII | GGWCC | 1 cut(s) | 574 |
| BaeGI | GKGCMC | 1 cut(s) | 472 |
| BalI | TGGCCA | 1 cut(s) | 196 |
| BanI | GGYRCC | 1 cut(s) | 469 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 396, 428 |
| Bbv12I | GWGCWC | 1 cut(s) | 716 |
| BbvI | GCAGC | 3 cut(s) | 471, 1016, 1036 |
| BccI | CCATC | 3 cut(s) | 301, 595, 694 |
| BceAI | ACGGC | 2 cut(s) | 166, 1103 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1003, 1037 |
| BciT130I | CCWGG | 2 cut(s) | 193, 971 |
| BclI | TGATCA | 1 cut(s) | 628 |
| BcnI | CCSGG | 1 cut(s) | 442 |
| BcoDI | GTCTC | 1 cut(s) | 759 |
| BcuI | ACTAGT | 1 cut(s) | 985 |
| BfaI | CTAG | 5 cut(s) | 488, 516, 585, 639, 986 |
| BfoI | RGCGCY | 1 cut(s) | 1030 |
| BfuAI | ACCTGC | 1 cut(s) | 1048 |
| BglII | AGATCT | 1 cut(s) | 50 |
| BisI | GCNGC | 6 cut(s) | 485, 952, 1025, 1030, 1116, 1125 |
| BlsI | GCNGC | 6 cut(s) | 486, 953, 1026, 1031, 1117, 1126 |
| Bme1390I | CCNGG | 3 cut(s) | 193, 442, 971 |
| Bme18I | GGWCC | 1 cut(s) | 574 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 152, 574 |
| BmiI | GGNNCC | 1 cut(s) | 471 |
| BmrFI | CCNGG | 3 cut(s) | 193, 442, 971 |
| BmrI | ACTGGG | 1 cut(s) | 902 |
| BmsI | GCATC | 4 cut(s) | 301, 384, 936, 1080 |
| BmuI | ACTGGG | 1 cut(s) | 902 |
| BpmI | CTGGAG | 1 cut(s) | 1080 |
| BpuEI | CTTGAG | 2 cut(s) | 77, 888 |
| BpuMI | CCSGG | 1 cut(s) | 442 |
| BsaBI | GATNNNNATC | 1 cut(s) | 927 |
| BsaJI | CCNNGG | 3 cut(s) | 7, 559, 970 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 211, 330, 364, 701, 958, 976, 1107 |
| Bse1I | ACTGG | 2 cut(s) | 405, 897 |
| Bse3DI | GCAATG | 2 cut(s) | 36, 1069 |
| Bse8I | GATNNNNATC | 1 cut(s) | 927 |
| BseBI | CCWGG | 2 cut(s) | 193, 971 |
| BseDI | CCNNGG | 3 cut(s) | 7, 559, 970 |
| BseGI | GGATG | 2 cut(s) | 316, 967 |
| BseJI | GATNNNNATC | 1 cut(s) | 927 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 211, 330, 364, 701, 958, 976, 1107 |
| BseMI | GCAATG | 2 cut(s) | 36, 1069 |
| BseMII | CTCAG | 4 cut(s) | 320, 822, 1077, 1116 |
| BseNI | ACTGG | 2 cut(s) | 405, 897 |
| BseRI | GAGGAG | 1 cut(s) | 346 |
| BseSI | GKGCMC | 1 cut(s) | 472 |
| BseXI | GCAGC | 3 cut(s) | 471, 1016, 1036 |
| Bsh1285I | CGRYCG | 1 cut(s) | 373 |
| BshFI | GGCC | 6 cut(s) | 6, 153, 196, 302, 350, 969 |
| BshNI | GGYRCC | 1 cut(s) | 469 |
| BsiEI | CGRYCG | 1 cut(s) | 373 |
| BsiHKAI | GWGCWC | 1 cut(s) | 716 |
| BsiSI | CCGG | 2 cut(s) | 441, 1108 |
| BslFI | GGGAC | 1 cut(s) | 380 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 211, 330, 364, 701, 958, 976, 1107 |
| BsmAI | GTCTC | 1 cut(s) | 759 |
| BsmFI | GGGAC | 1 cut(s) | 380 |
| BsmI | GAATGC | 1 cut(s) | 87 |
| BsnI | GGCC | 6 cut(s) | 6, 153, 196, 302, 350, 969 |
| Bsp1286I | GDGCHC | 2 cut(s) | 472, 716 |
| Bsp1407I | TGTACA | 1 cut(s) | 412 |
| Bsp143I | GATC | 8 cut(s) | 50, 166, 424, 628, 724, 913, 928, 1066 |
| BspACI | CCGC | 5 cut(s) | 123, 373, 952, 1116, 1125 |
| BspANI | GGCC | 6 cut(s) | 6, 153, 196, 302, 350, 969 |
| BspCNI | CTCAG | 4 cut(s) | 321, 821, 1078, 1115 |
| BspLI | GGNNCC | 1 cut(s) | 471 |
| BspMI | ACCTGC | 1 cut(s) | 1048 |
| BspPI | GGATC | 2 cut(s) | 432, 719 |
| BspQI | GCTCTTC | 1 cut(s) | 399 |
| BspT107I | GGYRCC | 1 cut(s) | 469 |
| BsrDI | GCAATG | 2 cut(s) | 36, 1069 |
| BsrGI | TGTACA | 1 cut(s) | 412 |
| BsrI | ACTGG | 2 cut(s) | 405, 897 |
| BssECI | CCNNGG | 3 cut(s) | 7, 559, 970 |
| BssMI | GATC | 8 cut(s) | 50, 166, 424, 628, 724, 913, 928, 1066 |
| BssT1I | CCWWGG | 1 cut(s) | 559 |
| Bst2UI | CCWGG | 2 cut(s) | 193, 971 |
| Bst4CI | ACNGT | 1 cut(s) | 162 |
| Bst6I | CTCTTC | 2 cut(s) | 399, 440 |
| BstAUI | TGTACA | 1 cut(s) | 412 |
| BstC8I | GCNNGC | 3 cut(s) | 956, 1011, 1113 |
| BstDEI | CTNAG | 4 cut(s) | 329, 808, 1086, 1102 |
| BstDSI | CCRYGG | 1 cut(s) | 7 |
| BstF5I | GGATG | 2 cut(s) | 316, 967 |
| BstH2I | RGCGCY | 1 cut(s) | 1030 |
| BstHHI | GCGC | 3 cut(s) | 553, 951, 1029 |
| BstKTI | GATC | 8 cut(s) | 53, 169, 427, 631, 727, 916, 931, 1069 |
| BstMAI | GTCTC | 1 cut(s) | 759 |
| BstMBI | GATC | 8 cut(s) | 50, 166, 424, 628, 724, 913, 928, 1066 |
| BstMCI | CGRYCG | 1 cut(s) | 373 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 955, 1121, 1124 |
| BstNI | CCWGG | 2 cut(s) | 193, 971 |
| BstNSI | RCATGY | 3 cut(s) | 31, 419, 541 |
| BstSCI | CCNGG | 3 cut(s) | 191, 440, 969 |
| BstSLI | GKGCMC | 1 cut(s) | 472 |
| BstV1I | GCAGC | 3 cut(s) | 471, 1016, 1036 |
| BstX2I | RGATCY | 1 cut(s) | 50 |
| BstYI | RGATCY | 1 cut(s) | 50 |
| BsuRI | GGCC | 6 cut(s) | 6, 153, 196, 302, 350, 969 |
| BtgI | CCRYGG | 1 cut(s) | 7 |
| BtgZI | GCGATG | 1 cut(s) | 1028 |
| BtsCI | GGATG | 2 cut(s) | 316, 967 |
| BtsIMutI | CAGTG | 1 cut(s) | 816 |
| BveI | ACCTGC | 1 cut(s) | 1048 |
| Cac8I | GCNNGC | 3 cut(s) | 956, 1011, 1113 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1040 |
| CfoI | GCGC | 3 cut(s) | 553, 951, 1029 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 152, 574 |
| Csp6I | GTAC | 3 cut(s) | 355, 413, 850 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 462, 497 |
| CviAII | CATG | 6 cut(s) | 28, 290, 363, 416, 500, 538 |
| CviQI | GTAC | 3 cut(s) | 355, 413, 850 |
| DdeI | CTNAG | 4 cut(s) | 329, 808, 1086, 1102 |
| DpnI | GATC | 8 cut(s) | 52, 168, 426, 630, 726, 915, 930, 1068 |
| DpnII | GATC | 8 cut(s) | 50, 166, 424, 628, 724, 913, 928, 1066 |
| EaeI | YGGCCR | 1 cut(s) | 194 |
| Eam1104I | CTCTTC | 2 cut(s) | 399, 440 |
| EarI | CTCTTC | 2 cut(s) | 399, 440 |
| Eco130I | CCWWGG | 1 cut(s) | 559 |
| Eco32I | GATATC | 1 cut(s) | 707 |
| Eco47I | GGWCC | 1 cut(s) | 574 |
| Eco47III | AGCGCT | 1 cut(s) | 1028 |
| EcoRI | GAATTC | 1 cut(s) | 676 |
| EcoRII | CCWGG | 2 cut(s) | 191, 969 |
| EcoRV | GATATC | 1 cut(s) | 707 |
| EcoT14I | CCWWGG | 1 cut(s) | 559 |
| ErhI | CCWWGG | 1 cut(s) | 559 |
| FaeI | CATG | 6 cut(s) | 31, 293, 366, 419, 503, 541 |
| FaqI | GGGAC | 1 cut(s) | 380 |
| FatI | CATG | 6 cut(s) | 27, 289, 362, 415, 499, 537 |
| FbaI | TGATCA | 1 cut(s) | 628 |
| Fnu4HI | GCNGC | 6 cut(s) | 485, 952, 1025, 1030, 1116, 1125 |
| FokI | GGATG | 2 cut(s) | 323, 974 |
| Fsp4HI | GCNGC | 6 cut(s) | 485, 952, 1025, 1030, 1116, 1125 |
| FspAI | RTGCGCAY | 1 cut(s) | 552 |
| FspBI | CTAG | 5 cut(s) | 488, 516, 585, 639, 986 |
| FspI | TGCGCA | 1 cut(s) | 552 |
| GlaI | GCGC | 3 cut(s) | 552, 950, 1028 |
| GluI | GCNGC | 6 cut(s) | 485, 952, 1025, 1030, 1116, 1125 |
| GsuI | CTGGAG | 1 cut(s) | 1080 |
| HaeII | RGCGCY | 1 cut(s) | 1030 |
| HaeIII | GGCC | 6 cut(s) | 6, 153, 196, 302, 350, 969 |
| HapII | CCGG | 2 cut(s) | 441, 1108 |
| HhaI | GCGC | 3 cut(s) | 553, 951, 1029 |
| Hin1II | CATG | 6 cut(s) | 31, 293, 366, 419, 503, 541 |
| Hin6I | GCGC | 3 cut(s) | 551, 949, 1027 |
| HinP1I | GCGC | 3 cut(s) | 551, 949, 1027 |
| HindIII | AAGCTT | 1 cut(s) | 99 |
| HinfI | GANTC | 4 cut(s) | 437, 665, 748, 1004 |
| HpaII | CCGG | 2 cut(s) | 441, 1108 |
| HphI | GGTGA | 1 cut(s) | 575 |
| Hpy166II | GTNNAC | 1 cut(s) | 852 |
| Hpy188I | TCNGA | 9 cut(s) | 166, 280, 391, 670, 711, 744, 774, 979, 1087 |
| Hpy188III | TCNNGA | 2 cut(s) | 94, 917 |
| Hpy8I | GTNNAC | 1 cut(s) | 852 |
| Hpy99I | CGWCG | 1 cut(s) | 1124 |
| HpyAV | CCTTC | 3 cut(s) | 76, 628, 959 |
| HpyCH4III | ACNGT | 1 cut(s) | 162 |
| HpyCH4IV | ACGT | 1 cut(s) | 65 |
| HpyCH4V | TGCA | 7 cut(s) | 31, 289, 541, 610, 993, 1024, 1043 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 955, 1121, 1124 |
| HpyF3I | CTNAG | 4 cut(s) | 329, 808, 1086, 1102 |
| HpySE526I | ACGT | 1 cut(s) | 65 |
| Hsp92II | CATG | 6 cut(s) | 31, 293, 366, 419, 503, 541 |
| HspAI | GCGC | 3 cut(s) | 551, 949, 1027 |
| Ksp22I | TGATCA | 1 cut(s) | 628 |
| Kzo9I | GATC | 8 cut(s) | 50, 166, 424, 628, 724, 913, 928, 1066 |
| LguI | GCTCTTC | 1 cut(s) | 399 |
| Lsp1109I | GCAGC | 3 cut(s) | 471, 1016, 1036 |
| LweI | GCATC | 4 cut(s) | 301, 384, 936, 1080 |
| MaeI | CTAG | 5 cut(s) | 488, 516, 585, 639, 986 |
| MaeII | ACGT | 1 cut(s) | 65 |
| MaeIII | GTNAC | 1 cut(s) | 511 |
| MalI | GATC | 8 cut(s) | 52, 168, 426, 630, 726, 915, 930, 1068 |
| MboI | GATC | 8 cut(s) | 50, 166, 424, 628, 724, 913, 928, 1066 |
| MboII | GAAGA | 3 cut(s) | 416, 457, 932 |
| MfeI | CAATTG | 1 cut(s) | 624 |
| MflI | RGATCY | 1 cut(s) | 50 |
| MhlI | GDGCHC | 2 cut(s) | 472, 716 |
| MlsI | TGGCCA | 1 cut(s) | 196 |
| MluCI | AATT | 5 cut(s) | 60, 233, 479, 624, 676 |
| MluNI | TGGCCA | 1 cut(s) | 196 |
| MlyI | GAGTC | 1 cut(s) | 1013 |
| MmeI | TCCRAC | 2 cut(s) | 402, 957 |
| Mox20I | TGGCCA | 1 cut(s) | 196 |
| MscI | TGGCCA | 1 cut(s) | 196 |
| MseI | TTAA | 2 cut(s) | 216, 237 |
| Msp20I | TGGCCA | 1 cut(s) | 196 |
| MspI | CCGG | 2 cut(s) | 441, 1108 |
| MspR9I | CCNGG | 3 cut(s) | 193, 442, 971 |
| MunI | CAATTG | 1 cut(s) | 624 |
| Mva1269I | GAATGC | 1 cut(s) | 87 |
| MvaI | CCWGG | 2 cut(s) | 193, 971 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 955, 1121, 1124 |
| NciI | CCSGG | 1 cut(s) | 442 |
| NdeII | GATC | 8 cut(s) | 50, 166, 424, 628, 724, 913, 928, 1066 |
| NlaIII | CATG | 6 cut(s) | 31, 293, 366, 419, 503, 541 |
| NlaIV | GGNNCC | 1 cut(s) | 471 |
| NmeAIII | GCCGAG | 1 cut(s) | 787 |
| NsbI | TGCGCA | 1 cut(s) | 552 |
| NspI | RCATGY | 3 cut(s) | 31, 419, 541 |
| PciI | ACATGT | 1 cut(s) | 415 |
| PciSI | GCTCTTC | 1 cut(s) | 399 |
| PctI | GAATGC | 1 cut(s) | 87 |
| PfeI | GAWTC | 3 cut(s) | 437, 665, 748 |
| PfoI | TCCNGGA | 1 cut(s) | 440 |
| PkrI | GCNGC | 6 cut(s) | 486, 953, 1026, 1031, 1117, 1126 |
| PleI | GAGTC | 1 cut(s) | 1012 |
| PpsI | GAGTC | 1 cut(s) | 1012 |
| PscI | ACATGT | 1 cut(s) | 415 |
| Psp6I | CCWGG | 2 cut(s) | 191, 969 |
| PspGI | CCWGG | 2 cut(s) | 191, 969 |
| PspN4I | GGNNCC | 1 cut(s) | 471 |
| PspPI | GGNCC | 3 cut(s) | 4, 152, 574 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1040 |
| PsuI | RGATCY | 1 cut(s) | 50 |
| RsaI | GTAC | 3 cut(s) | 356, 414, 851 |
| RsaNI | GTAC | 3 cut(s) | 355, 413, 850 |
| SapI | GCTCTTC | 1 cut(s) | 399 |
| SaqAI | TTAA | 2 cut(s) | 216, 237 |
| SatI | GCNGC | 6 cut(s) | 485, 952, 1025, 1030, 1116, 1125 |
| Sau3AI | GATC | 8 cut(s) | 50, 166, 424, 628, 724, 913, 928, 1066 |
| Sau96I | GGNCC | 3 cut(s) | 4, 152, 574 |
| SchI | GAGTC | 1 cut(s) | 1013 |
| ScrFI | CCNGG | 3 cut(s) | 193, 442, 971 |
| SduI | GDGCHC | 2 cut(s) | 472, 716 |
| SfaNI | GCATC | 4 cut(s) | 301, 384, 936, 1080 |
| SinI | GGWCC | 1 cut(s) | 574 |
| SmlI | CTYRAG | 2 cut(s) | 92, 903 |
| SmoI | CTYRAG | 2 cut(s) | 92, 903 |
| SpeI | ACTAGT | 1 cut(s) | 985 |
| Sse9I | AATT | 5 cut(s) | 60, 233, 479, 624, 676 |
| SsiI | CCGC | 5 cut(s) | 123, 373, 952, 1116, 1125 |
| SspI | AATATT | 1 cut(s) | 871 |
| SspMI | CTAG | 5 cut(s) | 488, 516, 585, 639, 986 |
| StyD4I | CCNGG | 3 cut(s) | 191, 440, 969 |
| StyI | CCWWGG | 1 cut(s) | 559 |
| TaaI | ACNGT | 1 cut(s) | 162 |
| TaiI | ACGT | 1 cut(s) | 68 |
| TaqI | TCGA | 3 cut(s) | 680, 875, 1065 |
| TasI | AATT | 5 cut(s) | 60, 233, 479, 624, 676 |
| TatI | WGTACW | 1 cut(s) | 412 |
| TauI | GCSGC | 3 cut(s) | 954, 1118, 1127 |
| TfiI | GAWTC | 3 cut(s) | 437, 665, 748 |
| Tru1I | TTAA | 2 cut(s) | 216, 237 |
| Tru9I | TTAA | 2 cut(s) | 216, 237 |
| TscAI | CASTG | 1 cut(s) | 816 |
| TseI | GCWGC | 3 cut(s) | 484, 1024, 1029 |
| TspDTI | ATGAA | 3 cut(s) | 873, 881, 978 |
| TspGWI | ACGGA | 2 cut(s) | 684, 996 |
| TspRI | CASTG | 1 cut(s) | 816 |
| VpaK11BI | GGWCC | 1 cut(s) | 574 |
| XapI | RAATTY | 2 cut(s) | 233, 676 |
| XceI | RCATGY | 3 cut(s) | 31, 419, 541 |
| XspI | CTAG | 5 cut(s) | 488, 516, 585, 639, 986 |