Rmu_sc0001478.1_g000006
MADS Family

MADS-box protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001478.1
Physical Location & Seq
Reverse (-)
20991 .. 23629
2639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001478.1_g000006.1.cds

Sequence Viewer

Length: 1131 bp
atgggccgtggtggtggaaaactgaacatgcaactcattgccgatgagagatctcgcagaattacgttccaaaagagaaagaagggcattctcaagaaagcttatgagttttcaaccctttgcggtgtagatatgtgcttgataatctacggcccaaaacagtctgatcggcgacctactgaactccacacctggccacaaaacccagatgaggttaatcgcattattgacaaatttaagctcaataacaaaccagccaccaaaacctacaacttgtccgattggttgcatgagcaaaaggccaagatggatgctaaaatctccaaactgaggagtgatatgtatgaggccaagtaccctacatgggacgaccgcatcaatgatttttcagaacatcaactggaagagcttgtacatgtgttggatcaaaagattgaatccgggaagagaacactacataatgtgagggcaccaccaaaattgctgctaggtggaagccatgttgctgatgtaactagccaaaagctctctaatcacatgcaagattatgcgcactaccttggtgagtatgaggaccaaaagcctagctatgtgagtatgatggatatgcaaatgcccttctcaattgatcagcctactagctattctcaaacgcttcaatatgattcagatttgaattcgatgatgactaatccgttgatgggatatccgagcacttactatgatccaagtggagtaagtcagatgattcagtctcctgccgagaataatccgaatatgatgatgttcaatagcgttccaagttcctcagtgagccactatgcccaactaatacagaagcctatgtcgtacactcaatacccgatgaatatttcgactatttcatcacaactgggaacttctcaagtaaaagatcgtgaagatgatgatctgttccataacaagatgcgccgcttgctggatgaaggccaggggtcggacggactagtttgcagtcaggtggagtcgctggcgatgaggttgcagcgctgcccagaacctgcaacctcaatctccaccgacctcgatcattgcccagaaaggtctgagatgcctccagcctcagtccggcaagccgccgtcgccgcctaa

Protein Analysis

376

Amino Acids

42.85

Weight (kDa)

6.27

Isoelectric Point (pI)

55.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 552
Acc36I ACCTGC 1 cut(s) 1048
AccB1I GGYRCC 1 cut(s) 469
AciI CCGC 5 cut(s) 123, 373, 952, 1116, 1125
AclWI GGATC 2 cut(s) 432, 719
AcoI YGGCCR 1 cut(s) 194
AcsI RAATTY 2 cut(s) 233, 676
AfaI GTAC 3 cut(s) 356, 414, 851
AfeI AGCGCT 1 cut(s) 1028
AfiI CCNNNNNNNGG 7 cut(s) 211, 330, 364, 701, 958, 976, 1107
AflIII ACRYGT 1 cut(s) 415
AgsI TTSAA 5 cut(s) 114, 437, 659, 676, 790
AhlI ACTAGT 1 cut(s) 985
AjnI CCWGG 2 cut(s) 191, 969
AluBI AGCT 6 cut(s) 101, 241, 409, 526, 588, 642
AluI AGCT 6 cut(s) 101, 241, 409, 526, 588, 642
Alw21I GWGCWC 1 cut(s) 716
Alw26I GTCTC 1 cut(s) 759
AlwI GGATC 2 cut(s) 432, 719
AlwNI CAGNNNCTG 1 cut(s) 1040
Aor51HI AGCGCT 1 cut(s) 1028
AoxI GGCC 6 cut(s) 4, 151, 194, 300, 348, 967
ApeKI GCWGC 3 cut(s) 484, 1024, 1029
ApoI RAATTY 2 cut(s) 233, 676
AspLEI GCGC 3 cut(s) 553, 951, 1029
AspS9I GGNCC 3 cut(s) 4, 152, 574
AsuC2I CCSGG 1 cut(s) 442
AsuHPI GGTGA 1 cut(s) 575
AvaII GGWCC 1 cut(s) 574
BaeGI GKGCMC 1 cut(s) 472
BalI TGGCCA 1 cut(s) 196
BanI GGYRCC 1 cut(s) 469
BarI GAAGNNNNNNTAC 2 cut(s) 396, 428
Bbv12I GWGCWC 1 cut(s) 716
BbvI GCAGC 3 cut(s) 471, 1016, 1036
BccI CCATC 3 cut(s) 301, 595, 694
BceAI ACGGC 2 cut(s) 166, 1103
BcgI CGANNNNNNTGC 2 cut(s) 1003, 1037
BciT130I CCWGG 2 cut(s) 193, 971
BclI TGATCA 1 cut(s) 628
BcnI CCSGG 1 cut(s) 442
BcoDI GTCTC 1 cut(s) 759
BcuI ACTAGT 1 cut(s) 985
BfaI CTAG 5 cut(s) 488, 516, 585, 639, 986
BfoI RGCGCY 1 cut(s) 1030
BfuAI ACCTGC 1 cut(s) 1048
BglII AGATCT 1 cut(s) 50
BisI GCNGC 6 cut(s) 485, 952, 1025, 1030, 1116, 1125
BlsI GCNGC 6 cut(s) 486, 953, 1026, 1031, 1117, 1126
Bme1390I CCNGG 3 cut(s) 193, 442, 971
Bme18I GGWCC 1 cut(s) 574
BmgT120I GGNCC 3 cut(s) 4, 152, 574
BmiI GGNNCC 1 cut(s) 471
BmrFI CCNGG 3 cut(s) 193, 442, 971
BmrI ACTGGG 1 cut(s) 902
BmsI GCATC 4 cut(s) 301, 384, 936, 1080
BmuI ACTGGG 1 cut(s) 902
BpmI CTGGAG 1 cut(s) 1080
BpuEI CTTGAG 2 cut(s) 77, 888
BpuMI CCSGG 1 cut(s) 442
BsaBI GATNNNNATC 1 cut(s) 927
BsaJI CCNNGG 3 cut(s) 7, 559, 970
Bsc4I CCNNNNNNNGG 7 cut(s) 211, 330, 364, 701, 958, 976, 1107
Bse1I ACTGG 2 cut(s) 405, 897
Bse3DI GCAATG 2 cut(s) 36, 1069
Bse8I GATNNNNATC 1 cut(s) 927
BseBI CCWGG 2 cut(s) 193, 971
BseDI CCNNGG 3 cut(s) 7, 559, 970
BseGI GGATG 2 cut(s) 316, 967
BseJI GATNNNNATC 1 cut(s) 927
BseLI CCNNNNNNNGG 7 cut(s) 211, 330, 364, 701, 958, 976, 1107
BseMI GCAATG 2 cut(s) 36, 1069
BseMII CTCAG 4 cut(s) 320, 822, 1077, 1116
BseNI ACTGG 2 cut(s) 405, 897
BseRI GAGGAG 1 cut(s) 346
BseSI GKGCMC 1 cut(s) 472
BseXI GCAGC 3 cut(s) 471, 1016, 1036
Bsh1285I CGRYCG 1 cut(s) 373
BshFI GGCC 6 cut(s) 6, 153, 196, 302, 350, 969
BshNI GGYRCC 1 cut(s) 469
BsiEI CGRYCG 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 716
BsiSI CCGG 2 cut(s) 441, 1108
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 7 cut(s) 211, 330, 364, 701, 958, 976, 1107
BsmAI GTCTC 1 cut(s) 759
BsmFI GGGAC 1 cut(s) 380
BsmI GAATGC 1 cut(s) 87
BsnI GGCC 6 cut(s) 6, 153, 196, 302, 350, 969
Bsp1286I GDGCHC 2 cut(s) 472, 716
Bsp1407I TGTACA 1 cut(s) 412
Bsp143I GATC 8 cut(s) 50, 166, 424, 628, 724, 913, 928, 1066
BspACI CCGC 5 cut(s) 123, 373, 952, 1116, 1125
BspANI GGCC 6 cut(s) 6, 153, 196, 302, 350, 969
BspCNI CTCAG 4 cut(s) 321, 821, 1078, 1115
BspLI GGNNCC 1 cut(s) 471
BspMI ACCTGC 1 cut(s) 1048
BspPI GGATC 2 cut(s) 432, 719
BspQI GCTCTTC 1 cut(s) 399
BspT107I GGYRCC 1 cut(s) 469
BsrDI GCAATG 2 cut(s) 36, 1069
BsrGI TGTACA 1 cut(s) 412
BsrI ACTGG 2 cut(s) 405, 897
BssECI CCNNGG 3 cut(s) 7, 559, 970
BssMI GATC 8 cut(s) 50, 166, 424, 628, 724, 913, 928, 1066
BssT1I CCWWGG 1 cut(s) 559
Bst2UI CCWGG 2 cut(s) 193, 971
Bst4CI ACNGT 1 cut(s) 162
Bst6I CTCTTC 2 cut(s) 399, 440
BstAUI TGTACA 1 cut(s) 412
BstC8I GCNNGC 3 cut(s) 956, 1011, 1113
BstDEI CTNAG 4 cut(s) 329, 808, 1086, 1102
BstDSI CCRYGG 1 cut(s) 7
BstF5I GGATG 2 cut(s) 316, 967
BstH2I RGCGCY 1 cut(s) 1030
BstHHI GCGC 3 cut(s) 553, 951, 1029
BstKTI GATC 8 cut(s) 53, 169, 427, 631, 727, 916, 931, 1069
BstMAI GTCTC 1 cut(s) 759
BstMBI GATC 8 cut(s) 50, 166, 424, 628, 724, 913, 928, 1066
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 3 cut(s) 955, 1121, 1124
BstNI CCWGG 2 cut(s) 193, 971
BstNSI RCATGY 3 cut(s) 31, 419, 541
BstSCI CCNGG 3 cut(s) 191, 440, 969
BstSLI GKGCMC 1 cut(s) 472
BstV1I GCAGC 3 cut(s) 471, 1016, 1036
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BsuRI GGCC 6 cut(s) 6, 153, 196, 302, 350, 969
BtgI CCRYGG 1 cut(s) 7
BtgZI GCGATG 1 cut(s) 1028
BtsCI GGATG 2 cut(s) 316, 967
BtsIMutI CAGTG 1 cut(s) 816
BveI ACCTGC 1 cut(s) 1048
Cac8I GCNNGC 3 cut(s) 956, 1011, 1113
CaiI CAGNNNCTG 1 cut(s) 1040
CfoI GCGC 3 cut(s) 553, 951, 1029
Cfr13I GGNCC 3 cut(s) 4, 152, 574
Csp6I GTAC 3 cut(s) 355, 413, 850
CspCI CAANNNNNGTGG 2 cut(s) 462, 497
CviAII CATG 6 cut(s) 28, 290, 363, 416, 500, 538
CviQI GTAC 3 cut(s) 355, 413, 850
DdeI CTNAG 4 cut(s) 329, 808, 1086, 1102
DpnI GATC 8 cut(s) 52, 168, 426, 630, 726, 915, 930, 1068
DpnII GATC 8 cut(s) 50, 166, 424, 628, 724, 913, 928, 1066
EaeI YGGCCR 1 cut(s) 194
Eam1104I CTCTTC 2 cut(s) 399, 440
EarI CTCTTC 2 cut(s) 399, 440
Eco130I CCWWGG 1 cut(s) 559
Eco32I GATATC 1 cut(s) 707
Eco47I GGWCC 1 cut(s) 574
Eco47III AGCGCT 1 cut(s) 1028
EcoRI GAATTC 1 cut(s) 676
EcoRII CCWGG 2 cut(s) 191, 969
EcoRV GATATC 1 cut(s) 707
EcoT14I CCWWGG 1 cut(s) 559
ErhI CCWWGG 1 cut(s) 559
FaeI CATG 6 cut(s) 31, 293, 366, 419, 503, 541
FaqI GGGAC 1 cut(s) 380
FatI CATG 6 cut(s) 27, 289, 362, 415, 499, 537
FbaI TGATCA 1 cut(s) 628
Fnu4HI GCNGC 6 cut(s) 485, 952, 1025, 1030, 1116, 1125
FokI GGATG 2 cut(s) 323, 974
Fsp4HI GCNGC 6 cut(s) 485, 952, 1025, 1030, 1116, 1125
FspAI RTGCGCAY 1 cut(s) 552
FspBI CTAG 5 cut(s) 488, 516, 585, 639, 986
FspI TGCGCA 1 cut(s) 552
GlaI GCGC 3 cut(s) 552, 950, 1028
GluI GCNGC 6 cut(s) 485, 952, 1025, 1030, 1116, 1125
GsuI CTGGAG 1 cut(s) 1080
HaeII RGCGCY 1 cut(s) 1030
HaeIII GGCC 6 cut(s) 6, 153, 196, 302, 350, 969
HapII CCGG 2 cut(s) 441, 1108
HhaI GCGC 3 cut(s) 553, 951, 1029
Hin1II CATG 6 cut(s) 31, 293, 366, 419, 503, 541
Hin6I GCGC 3 cut(s) 551, 949, 1027
HinP1I GCGC 3 cut(s) 551, 949, 1027
HindIII AAGCTT 1 cut(s) 99
HinfI GANTC 4 cut(s) 437, 665, 748, 1004
HpaII CCGG 2 cut(s) 441, 1108
HphI GGTGA 1 cut(s) 575
Hpy166II GTNNAC 1 cut(s) 852
Hpy188I TCNGA 9 cut(s) 166, 280, 391, 670, 711, 744, 774, 979, 1087
Hpy188III TCNNGA 2 cut(s) 94, 917
Hpy8I GTNNAC 1 cut(s) 852
Hpy99I CGWCG 1 cut(s) 1124
HpyAV CCTTC 3 cut(s) 76, 628, 959
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 7 cut(s) 31, 289, 541, 610, 993, 1024, 1043
HpyF10VI GCNNNNNNNGC 3 cut(s) 955, 1121, 1124
HpyF3I CTNAG 4 cut(s) 329, 808, 1086, 1102
HpySE526I ACGT 1 cut(s) 65
Hsp92II CATG 6 cut(s) 31, 293, 366, 419, 503, 541
HspAI GCGC 3 cut(s) 551, 949, 1027
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 8 cut(s) 50, 166, 424, 628, 724, 913, 928, 1066
LguI GCTCTTC 1 cut(s) 399
Lsp1109I GCAGC 3 cut(s) 471, 1016, 1036
LweI GCATC 4 cut(s) 301, 384, 936, 1080
MaeI CTAG 5 cut(s) 488, 516, 585, 639, 986
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 1 cut(s) 511
MalI GATC 8 cut(s) 52, 168, 426, 630, 726, 915, 930, 1068
MboI GATC 8 cut(s) 50, 166, 424, 628, 724, 913, 928, 1066
MboII GAAGA 3 cut(s) 416, 457, 932
MfeI CAATTG 1 cut(s) 624
MflI RGATCY 1 cut(s) 50
MhlI GDGCHC 2 cut(s) 472, 716
MlsI TGGCCA 1 cut(s) 196
MluCI AATT 5 cut(s) 60, 233, 479, 624, 676
MluNI TGGCCA 1 cut(s) 196
MlyI GAGTC 1 cut(s) 1013
MmeI TCCRAC 2 cut(s) 402, 957
Mox20I TGGCCA 1 cut(s) 196
MscI TGGCCA 1 cut(s) 196
MseI TTAA 2 cut(s) 216, 237
Msp20I TGGCCA 1 cut(s) 196
MspI CCGG 2 cut(s) 441, 1108
MspR9I CCNGG 3 cut(s) 193, 442, 971
MunI CAATTG 1 cut(s) 624
Mva1269I GAATGC 1 cut(s) 87
MvaI CCWGG 2 cut(s) 193, 971
MwoI GCNNNNNNNGC 3 cut(s) 955, 1121, 1124
NciI CCSGG 1 cut(s) 442
NdeII GATC 8 cut(s) 50, 166, 424, 628, 724, 913, 928, 1066
NlaIII CATG 6 cut(s) 31, 293, 366, 419, 503, 541
NlaIV GGNNCC 1 cut(s) 471
NmeAIII GCCGAG 1 cut(s) 787
NsbI TGCGCA 1 cut(s) 552
NspI RCATGY 3 cut(s) 31, 419, 541
PciI ACATGT 1 cut(s) 415
PciSI GCTCTTC 1 cut(s) 399
PctI GAATGC 1 cut(s) 87
PfeI GAWTC 3 cut(s) 437, 665, 748
PfoI TCCNGGA 1 cut(s) 440
PkrI GCNGC 6 cut(s) 486, 953, 1026, 1031, 1117, 1126
PleI GAGTC 1 cut(s) 1012
PpsI GAGTC 1 cut(s) 1012
PscI ACATGT 1 cut(s) 415
Psp6I CCWGG 2 cut(s) 191, 969
PspGI CCWGG 2 cut(s) 191, 969
PspN4I GGNNCC 1 cut(s) 471
PspPI GGNCC 3 cut(s) 4, 152, 574
PstNI CAGNNNCTG 1 cut(s) 1040
PsuI RGATCY 1 cut(s) 50
RsaI GTAC 3 cut(s) 356, 414, 851
RsaNI GTAC 3 cut(s) 355, 413, 850
SapI GCTCTTC 1 cut(s) 399
SaqAI TTAA 2 cut(s) 216, 237
SatI GCNGC 6 cut(s) 485, 952, 1025, 1030, 1116, 1125
Sau3AI GATC 8 cut(s) 50, 166, 424, 628, 724, 913, 928, 1066
Sau96I GGNCC 3 cut(s) 4, 152, 574
SchI GAGTC 1 cut(s) 1013
ScrFI CCNGG 3 cut(s) 193, 442, 971
SduI GDGCHC 2 cut(s) 472, 716
SfaNI GCATC 4 cut(s) 301, 384, 936, 1080
SinI GGWCC 1 cut(s) 574
SmlI CTYRAG 2 cut(s) 92, 903
SmoI CTYRAG 2 cut(s) 92, 903
SpeI ACTAGT 1 cut(s) 985
Sse9I AATT 5 cut(s) 60, 233, 479, 624, 676
SsiI CCGC 5 cut(s) 123, 373, 952, 1116, 1125
SspI AATATT 1 cut(s) 871
SspMI CTAG 5 cut(s) 488, 516, 585, 639, 986
StyD4I CCNGG 3 cut(s) 191, 440, 969
StyI CCWWGG 1 cut(s) 559
TaaI ACNGT 1 cut(s) 162
TaiI ACGT 1 cut(s) 68
TaqI TCGA 3 cut(s) 680, 875, 1065
TasI AATT 5 cut(s) 60, 233, 479, 624, 676
TatI WGTACW 1 cut(s) 412
TauI GCSGC 3 cut(s) 954, 1118, 1127
TfiI GAWTC 3 cut(s) 437, 665, 748
Tru1I TTAA 2 cut(s) 216, 237
Tru9I TTAA 2 cut(s) 216, 237
TscAI CASTG 1 cut(s) 816
TseI GCWGC 3 cut(s) 484, 1024, 1029
TspDTI ATGAA 3 cut(s) 873, 881, 978
TspGWI ACGGA 2 cut(s) 684, 996
TspRI CASTG 1 cut(s) 816
VpaK11BI GGWCC 1 cut(s) 574
XapI RAATTY 2 cut(s) 233, 676
XceI RCATGY 3 cut(s) 31, 419, 541
XspI CTAG 5 cut(s) 488, 516, 585, 639, 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.