Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Reverse (-)

15937278 .. 15938458

Gene Structure 1181 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G39810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCCATTCGATCTTTACCTTCTTCCTCAGGCTGTTCCAATTCCTCTTCGTCTTCTTCTTATTCACTCGCTTCAACAAGTTTGAGCAATAGACTTGAGACCATCTTCAGGAAAGCTTCAGAGCTTTGCACTCTCTGTGATATCGAAGCATGCGTCATCTATTACGGACCAGACGGAGAACTCAAGACATGGCCTCCGGAGCGAGAGAAAGTGGAAGACATTGCTCTCAGGTATAGTCAACTAAACGAAGCCTTGAGACGCAAGAAGAGCGTTACTCTTTATGACTTCCTGAACAAGAAGAAGAACAAGACGAACTTGGAGAAGAAAGCAAAGATAAAGGACAACGACTTGAAAAGACTTTCCTTAGAACCTCATGTCTCTAAAGTCCGAGAAAGGATTCGTTTTGTTGAGTCGCAGAAACATAAGGAGACAAAACCGGATCATCAGAGTTTAGCATCATCCTCTCTGAATAATCAGACCCAATCTTTGAACCCTAGCCAGTTTTCGCTGTTTATGTATAACCATGGAGATAATATTCTGTCTCAGATCCCAGTCTCTGCATCAAATTTCAATCAGGATTATTTCTCAGCGTTACTTGAACAATCTGAGTTGAAGAGTCAGATAATGAAGCAGGAGGTTTGTGGTTATGAGCAGAACATGTGCATGAGTAACAATGGAGATGCTACGCTCTCTCAAATCCCACTCTCTGCATCAAATTTCAATCAAGAGTTCTCAGCCTTACTACAAGAAGAATCTGGCTTGATGCAACAGGAGCTTTGTAATTATGATCAGAACATGTTTATGAACAACAACAACTTCCAACATTCTTTTGTCTCAAACACACAAGATCACTCTGCTCCTGCGGTACAAGAATCTGTGAACAACAACTATGGGTTGATGCCGCATGTTCCTTGTGGTTATGATCAGAACCTGTTTACGAGTGATATTACCAACAACAACCTTCTTATCGACAACTCGATGTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

329

Amino Acids

37.29

Weight (kDa)

5.71

Isoelectric Point (pI)

50.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	25 - 64	6.1e-14	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	2 cut(s)	863, 902
AclWI	GGATC	2 cut(s)	447, 541
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	565, 715
AcuI	CTGAAG	2 cut(s)	91, 102
AfaI	GTAC	1 cut(s)	867
AfiI	CCNNNNNNNGG	1 cut(s)	108
AflIII	ACRYGT	2 cut(s)	657, 795
AgsI	TTSAA	7 cut(s)	75, 352, 490, 571, 599, 613, 721
AluBI	AGCT	3 cut(s)	116, 124, 775
AluI	AGCT	3 cut(s)	116, 124, 775
Alw26I	GTCTC	7 cut(s)	92, 250, 382, 422, 546, 559, 838
AlwI	GGATC	2 cut(s)	447, 541
AlwNI	CAGNNNCTG	2 cut(s)	557, 931
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	2 cut(s)	3, 191
ApoI	RAATTY	2 cut(s)	565, 715
ArsI	GACNNNNNNTTYG	4 cut(s)	138, 170, 469, 501
Asp700I	GAANNNNTTC	1 cut(s)	396
AspS9I	GGNCC	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	167
AxyI	CCTNAGG	1 cut(s)	28
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	45, 222
BccI	CCATC	1 cut(s)	110
BclI	TGATCA	2 cut(s)	787, 922
BcoDI	GTCTC	7 cut(s)	92, 250, 382, 422, 546, 559, 838
BfaI	CTAG	1 cut(s)	495
BisI	GCNGC	1 cut(s)	902
BlsI	GCNGC	1 cut(s)	903
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BmrI	ACTGGG	1 cut(s)	545
BmsI	GCATC	6 cut(s)	464, 569, 670, 719, 753, 888
BmuI	ACTGGG	1 cut(s)	545
BpiI	GAAGAC	2 cut(s)	45, 222
BplI	GAGNNNNNCTC	2 cut(s)	259, 291
BpuEI	CTTGAG	3 cut(s)	116, 167, 274
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	523
BsaWI	WCCGGW	2 cut(s)	196, 436
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse1I	ACTGG	2 cut(s)	499, 551
Bse21I	CCTNAGG	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	219
BseAI	TCCGGA	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	523
BseGI	GGATG	1 cut(s)	458
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	6 cut(s)	42, 241, 557, 597, 600, 747
BseNI	ACTGG	2 cut(s)	499, 551
BshFI	GGCC	2 cut(s)	5, 193
BsiSI	CCGG	2 cut(s)	197, 437
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	7 cut(s)	92, 250, 382, 422, 546, 559, 838
BsmBI	CGTCTC	1 cut(s)	250
BsnI	GGCC	2 cut(s)	5, 193
Bso31I	GGTCTC	1 cut(s)	92
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	6 cut(s)	11, 439, 546, 787, 847, 922
Bsp19I	CCATGG	1 cut(s)	523
BspACI	CCGC	2 cut(s)	863, 902
BspANI	GGCC	2 cut(s)	5, 193
BspCNI	CTCAG	6 cut(s)	41, 240, 556, 598, 599, 746
BspEI	TCCGGA	1 cut(s)	196
BspPI	GGATC	2 cut(s)	447, 541
BspQI	GCTCTTC	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	219
BsrI	ACTGG	2 cut(s)	499, 551
BssECI	CCNNGG	1 cut(s)	523
BssMI	GATC	6 cut(s)	11, 439, 546, 787, 847, 922
BssT1I	CCWWGG	1 cut(s)	523
Bst6I	CTCTTC	3 cut(s)	52, 260, 608
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	7 cut(s)	28, 227, 364, 543, 586, 606, 733
BstDSI	CCRYGG	1 cut(s)	523
BstF5I	GGATG	1 cut(s)	458
BstKTI	GATC	6 cut(s)	14, 442, 549, 790, 850, 925
BstMAI	GTCTC	7 cut(s)	92, 250, 382, 422, 546, 559, 838
BstMBI	GATC	6 cut(s)	11, 439, 546, 787, 847, 922
BstMWI	GCNNNNNNNGC	3 cut(s)	199, 267, 772
BstNSI	RCATGY	4 cut(s)	153, 661, 799, 908
BstV2I	GAAGAC	2 cut(s)	45, 222
BstX2I	RGATCY	1 cut(s)	546
BstYI	RGATCY	1 cut(s)	546
Bsu36I	CCTNAGG	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	5, 193
BtgI	CCRYGG	1 cut(s)	523
BtsCI	GGATG	1 cut(s)	458
Cac8I	GCNNGC	1 cut(s)	151
CaiI	CAGNNNCTG	2 cut(s)	557, 931
Cfr13I	GGNCC	1 cut(s)	167
CseI	GACGC	2 cut(s)	142, 267
Csp6I	GTAC	1 cut(s)	866
CviAII	CATG	8 cut(s)	150, 189, 374, 524, 658, 664, 796, 905
CviQI	GTAC	1 cut(s)	866
DdeI	CTNAG	7 cut(s)	28, 227, 364, 543, 586, 606, 733
DpnI	GATC	6 cut(s)	13, 441, 548, 789, 849, 924
DpnII	GATC	6 cut(s)	11, 439, 546, 787, 847, 922
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	52, 260, 608
EarI	CTCTTC	3 cut(s)	52, 260, 608
Eco130I	CCWWGG	1 cut(s)	523
Eco31I	GGTCTC	1 cut(s)	92
Eco32I	GATATC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	167
Eco57I	CTGAAG	2 cut(s)	91, 102
Eco81I	CCTNAGG	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	523
ErhI	CCWWGG	1 cut(s)	523
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	8 cut(s)	153, 192, 377, 527, 661, 667, 799, 908
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FatI	CATG	8 cut(s)	149, 188, 373, 523, 657, 663, 795, 904
FbaI	TGATCA	2 cut(s)	787, 922
Fnu4HI	GCNGC	1 cut(s)	902
FokI	GGATG	1 cut(s)	445
Fsp4HI	GCNGC	1 cut(s)	902
FspBI	CTAG	1 cut(s)	495
GluI	GCNGC	1 cut(s)	902
HaeIII	GGCC	2 cut(s)	5, 193
HapII	CCGG	2 cut(s)	197, 437
HgaI	GACGC	2 cut(s)	142, 267
Hin1II	CATG	8 cut(s)	153, 192, 377, 527, 661, 667, 799, 908
HincII	GTYRAC	1 cut(s)	239
HindII	GTYRAC	1 cut(s)	239
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	5 cut(s)	397, 410, 616, 752, 872
HpaII	CCGG	2 cut(s)	197, 437
Hpy166II	GTNNAC	3 cut(s)	239, 880, 936
Hpy188III	TCNNGA	6 cut(s)	109, 184, 197, 289, 575, 725
Hpy8I	GTNNAC	3 cut(s)	239, 880, 936
HpyAV	CCTTC	2 cut(s)	30, 971
HpyCH4V	TGCA	5 cut(s)	129, 560, 663, 710, 766
HpyF10VI	GCNNNNNNNGC	3 cut(s)	199, 267, 772
HpyF3I	CTNAG	7 cut(s)	28, 227, 364, 543, 586, 606, 733
Hsp92II	CATG	8 cut(s)	153, 192, 377, 527, 661, 667, 799, 908
Kpn2I	TCCGGA	1 cut(s)	196
Ksp22I	TGATCA	2 cut(s)	787, 922
Kzo9I	GATC	6 cut(s)	11, 439, 546, 787, 847, 922
LguI	GCTCTTC	1 cut(s)	260
LmnI	GCTCC	3 cut(s)	199, 772, 862
LweI	GCATC	6 cut(s)	464, 569, 670, 719, 753, 888
MaeI	CTAG	1 cut(s)	495
MaeIII	GTNAC	3 cut(s)	271, 591, 668
MalI	GATC	6 cut(s)	13, 441, 548, 789, 849, 924
MboI	GATC	6 cut(s)	11, 439, 546, 787, 847, 922
MflI	RGATCY	1 cut(s)	546
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	40, 565, 715, 781
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	419, 625
MmeI	TCCRAC	1 cut(s)	844
MnlI	CCTC	6 cut(s)	37, 55, 204, 381, 472, 628
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	196
MroXI	GAANNNNTTC	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	662, 800
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	197, 437
MwoI	GCNNNNNNNGC	3 cut(s)	199, 267, 772
NcoI	CCATGG	1 cut(s)	523
NdeII	GATC	6 cut(s)	11, 439, 546, 787, 847, 922
NlaIII	CATG	8 cut(s)	153, 192, 377, 527, 661, 667, 799, 908
NspI	RCATGY	4 cut(s)	153, 661, 799, 908
PaeI	GCATGC	1 cut(s)	153
PciI	ACATGT	2 cut(s)	657, 795
PciSI	GCTCTTC	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	3 cut(s)	397, 752, 872
PkrI	GCNGC	1 cut(s)	903
PleI	GAGTC	2 cut(s)	418, 624
PpsI	GAGTC	2 cut(s)	418, 624
PscI	ACATGT	2 cut(s)	657, 795
PspPI	GGNCC	1 cut(s)	167
PstNI	CAGNNNCTG	2 cut(s)	557, 931
PsuI	RGATCY	1 cut(s)	546
RsaI	GTAC	1 cut(s)	867
RsaNI	GTAC	1 cut(s)	866
RseI	CAYNNNNRTG	2 cut(s)	662, 800
SapI	GCTCTTC	1 cut(s)	260
SatI	GCNGC	1 cut(s)	902
Sau3AI	GATC	6 cut(s)	11, 439, 546, 787, 847, 922
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	2 cut(s)	419, 625
SetI	ASST	9 cut(s)	22, 118, 126, 233, 373, 639, 777, 933, 963
SfaNI	GCATC	6 cut(s)	464, 569, 670, 719, 753, 888
SinI	GGWCC	1 cut(s)	167
SmiMI	CAYNNNNRTG	2 cut(s)	662, 800
SmlI	CTYRAG	3 cut(s)	95, 182, 253
SmoI	CTYRAG	3 cut(s)	95, 182, 253
SphI	GCATGC	1 cut(s)	153
Sse9I	AATT	4 cut(s)	40, 565, 715, 781
SsiI	CCGC	2 cut(s)	863, 902
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	1 cut(s)	495
StyI	CCWWGG	1 cut(s)	523
TaqI	TCGA	4 cut(s)	10, 144, 969, 977
TasI	AATT	4 cut(s)	40, 565, 715, 781
TauI	GCSGC	1 cut(s)	904
TfiI	GAWTC	3 cut(s)	397, 752, 872
TspDTI	ATGAA	2 cut(s)	641, 818
TspGWI	ACGGA	2 cut(s)	180, 189
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	2 cut(s)	565, 715
XceI	RCATGY	4 cut(s)	153, 661, 799, 908
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.