MADS-box protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1075 |
| AccII | CGCG | 2 cut(s) | 9, 952 |
| AciI | CCGC | 2 cut(s) | 9, 809 |
| AclI | AACGTT | 1 cut(s) | 59 |
| AclWI | GGATC | 1 cut(s) | 582 |
| AcoI | YGGCCR | 1 cut(s) | 252 |
| AcsI | RAATTY | 1 cut(s) | 193 |
| AcuI | CTGAAG | 2 cut(s) | 38, 782 |
| AfaI | GTAC | 4 cut(s) | 227, 353, 803, 1055 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 196, 286, 361, 526, 527, 848, 1075 |
| AgsI | TTSAA | 5 cut(s) | 65, 108, 616, 721, 1022 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 248, 280 |
| AluBI | AGCT | 5 cut(s) | 154, 430, 473, 609, 924 |
| AluI | AGCT | 5 cut(s) | 154, 430, 473, 609, 924 |
| Alw21I | GWGCWC | 2 cut(s) | 611, 829 |
| Alw26I | GTCTC | 2 cut(s) | 658, 959 |
| AlwI | GGATC | 1 cut(s) | 582 |
| Ama87I | CYCGRG | 1 cut(s) | 398 |
| AoxI | GGCC | 5 cut(s) | 145, 164, 185, 252, 345 |
| ApeKI | GCWGC | 3 cut(s) | 473, 961, 994 |
| ApoI | RAATTY | 1 cut(s) | 193 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 263 |
| AspLEI | GCGC | 1 cut(s) | 952 |
| AspS9I | GGNCC | 6 cut(s) | 146, 186, 277, 289, 592, 914 |
| AsuHPI | GGTGA | 2 cut(s) | 542, 831 |
| AvaI | CYCGRG | 1 cut(s) | 398 |
| AvaII | GGWCC | 4 cut(s) | 277, 289, 592, 914 |
| BaeGI | GKGCMC | 1 cut(s) | 975 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 355, 388 |
| BanII | GRGCYC | 2 cut(s) | 328, 611 |
| Bbv12I | GWGCWC | 2 cut(s) | 611, 829 |
| BbvI | GCAGC | 3 cut(s) | 460, 973, 1006 |
| BccI | CCATC | 6 cut(s) | 16, 280, 502, 745, 763, 1087 |
| BceAI | ACGGC | 1 cut(s) | 160 |
| BclI | TGATCA | 3 cut(s) | 664, 682, 871 |
| BcoDI | GTCTC | 2 cut(s) | 658, 959 |
| BfmI | CTRYAG | 2 cut(s) | 787, 966 |
| BglII | AGATCT | 1 cut(s) | 44 |
| BisI | GCNGC | 3 cut(s) | 474, 962, 995 |
| BlpI | GCTNAGC | 1 cut(s) | 426 |
| BlsI | GCNGC | 3 cut(s) | 475, 963, 996 |
| Bme18I | GGWCC | 4 cut(s) | 277, 289, 592, 914 |
| BmeT110I | CYCGRG | 1 cut(s) | 398 |
| BmgT120I | GGNCC | 6 cut(s) | 146, 186, 277, 289, 592, 914 |
| BmiI | GGNNCC | 3 cut(s) | 188, 552, 735 |
| BmrI | ACTGGG | 1 cut(s) | 993 |
| BmsI | GCATC | 4 cut(s) | 141, 412, 981, 991 |
| BmuI | ACTGGG | 1 cut(s) | 993 |
| BpmI | CTGGAG | 2 cut(s) | 153, 623 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 426 |
| BpuEI | CTTGAG | 2 cut(s) | 452, 1020 |
| Bsa29I | ATCGAT | 1 cut(s) | 481 |
| BsaBI | GATNNNNATC | 2 cut(s) | 579, 669 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 196, 286, 361, 526, 527, 848, 1075 |
| Bse118I | RCCGGY | 1 cut(s) | 250 |
| Bse1I | ACTGG | 1 cut(s) | 999 |
| Bse3DI | GCAATG | 2 cut(s) | 30, 762 |
| Bse8I | GATNNNNATC | 2 cut(s) | 579, 669 |
| BseCI | ATCGAT | 1 cut(s) | 481 |
| BseGI | GGATG | 4 cut(s) | 130, 513, 768, 929 |
| BseJI | GATNNNNATC | 2 cut(s) | 579, 669 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 196, 286, 361, 526, 527, 848, 1075 |
| BseMI | GCAATG | 2 cut(s) | 30, 762 |
| BseMII | CTCAG | 1 cut(s) | 1025 |
| BseNI | ACTGG | 1 cut(s) | 999 |
| BseRI | GAGGAG | 1 cut(s) | 916 |
| BseSI | GKGCMC | 1 cut(s) | 975 |
| BseXI | GCAGC | 3 cut(s) | 460, 973, 1006 |
| Bsh1236I | CGCG | 2 cut(s) | 9, 952 |
| Bsh1285I | CGRYCG | 1 cut(s) | 211 |
| BshFI | GGCC | 5 cut(s) | 147, 166, 187, 254, 347 |
| BshVI | ATCGAT | 1 cut(s) | 481 |
| BsiEI | CGRYCG | 1 cut(s) | 211 |
| BsiHKAI | GWGCWC | 2 cut(s) | 611, 829 |
| BsiHKCI | CYCGRG | 1 cut(s) | 398 |
| BsiSI | CCGG | 1 cut(s) | 251 |
| BslFI | GGGAC | 1 cut(s) | 377 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 196, 286, 361, 526, 527, 848, 1075 |
| BsmAI | GTCTC | 2 cut(s) | 658, 959 |
| BsmBI | CGTCTC | 1 cut(s) | 959 |
| BsmFI | GGGAC | 1 cut(s) | 377 |
| BsnI | GGCC | 5 cut(s) | 147, 166, 187, 254, 347 |
| BsoBI | CYCGRG | 1 cut(s) | 398 |
| Bsp1286I | GDGCHC | 4 cut(s) | 328, 611, 829, 975 |
| Bsp143I | GATC | 9 cut(s) | 44, 160, 208, 574, 664, 682, 709, 871, 1048 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 426 |
| BspACI | CCGC | 2 cut(s) | 9, 809 |
| BspANI | GGCC | 5 cut(s) | 147, 166, 187, 254, 347 |
| BspCNI | CTCAG | 1 cut(s) | 1024 |
| BspDI | ATCGAT | 1 cut(s) | 481 |
| BspFNI | CGCG | 2 cut(s) | 9, 952 |
| BspHI | TCATGA | 2 cut(s) | 583, 1080 |
| BspLI | GGNNCC | 3 cut(s) | 188, 552, 735 |
| BspMAI | CTGCAG | 1 cut(s) | 970 |
| BspPI | GGATC | 1 cut(s) | 582 |
| BsrDI | GCAATG | 2 cut(s) | 30, 762 |
| BsrFI | RCCGGY | 1 cut(s) | 250 |
| BsrI | ACTGG | 1 cut(s) | 999 |
| BssAI | RCCGGY | 1 cut(s) | 250 |
| BssMI | GATC | 9 cut(s) | 44, 160, 208, 574, 664, 682, 709, 871, 1048 |
| Bst4CI | ACNGT | 3 cut(s) | 628, 860, 869 |
| Bst6I | CTCTTC | 1 cut(s) | 582 |
| BstC8I | GCNNGC | 2 cut(s) | 235, 966 |
| BstDEI | CTNAG | 3 cut(s) | 426, 920, 1011 |
| BstF5I | GGATG | 4 cut(s) | 130, 513, 768, 929 |
| BstFNI | CGCG | 2 cut(s) | 9, 952 |
| BstHHI | GCGC | 1 cut(s) | 952 |
| BstKTI | GATC | 9 cut(s) | 47, 163, 211, 577, 667, 685, 712, 874, 1051 |
| BstMAI | GTCTC | 2 cut(s) | 658, 959 |
| BstMBI | GATC | 9 cut(s) | 44, 160, 208, 574, 664, 682, 709, 871, 1048 |
| BstMCI | CGRYCG | 1 cut(s) | 211 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 243, 958, 970, 979 |
| BstNSI | RCATGY | 2 cut(s) | 571, 982 |
| BstSFI | CTRYAG | 2 cut(s) | 787, 966 |
| BstSLI | GKGCMC | 1 cut(s) | 975 |
| BstUI | CGCG | 2 cut(s) | 9, 952 |
| BstV1I | GCAGC | 3 cut(s) | 460, 973, 1006 |
| BstX2I | RGATCY | 1 cut(s) | 44 |
| BstYI | RGATCY | 1 cut(s) | 44 |
| Bsu15I | ATCGAT | 1 cut(s) | 481 |
| BsuRI | GGCC | 5 cut(s) | 147, 166, 187, 254, 347 |
| BsuTUI | ATCGAT | 1 cut(s) | 481 |
| BtsCI | GGATG | 4 cut(s) | 130, 513, 768, 929 |
| BtsI | GCAGTG | 2 cut(s) | 829, 975 |
| BtsIMutI | CAGTG | 4 cut(s) | 829, 856, 874, 975 |
| Cac8I | GCNNGC | 2 cut(s) | 235, 966 |
| CciI | TCATGA | 2 cut(s) | 583, 1080 |
| CfoI | GCGC | 1 cut(s) | 952 |
| Cfr10I | RCCGGY | 1 cut(s) | 250 |
| Cfr13I | GGNCC | 6 cut(s) | 146, 186, 277, 289, 592, 914 |
| ClaI | ATCGAT | 1 cut(s) | 481 |
| CseI | GACGC | 1 cut(s) | 941 |
| Csp6I | GTAC | 4 cut(s) | 226, 352, 802, 1054 |
| CviAII | CATG | 9 cut(s) | 241, 360, 526, 568, 584, 934, 958, 979, 1081 |
| CviQI | GTAC | 4 cut(s) | 226, 352, 802, 1054 |
| DdeI | CTNAG | 3 cut(s) | 426, 920, 1011 |
| DpnI | GATC | 9 cut(s) | 46, 162, 210, 576, 666, 684, 711, 873, 1050 |
| DpnII | GATC | 9 cut(s) | 44, 160, 208, 574, 664, 682, 709, 871, 1048 |
| EaeI | YGGCCR | 1 cut(s) | 252 |
| Eam1104I | CTCTTC | 1 cut(s) | 582 |
| EarI | CTCTTC | 1 cut(s) | 582 |
| Ecl136II | GAGCTC | 1 cut(s) | 609 |
| Eco24I | GRGCYC | 2 cut(s) | 328, 611 |
| Eco32I | GATATC | 1 cut(s) | 1063 |
| Eco47I | GGWCC | 4 cut(s) | 277, 289, 592, 914 |
| Eco53kI | GAGCTC | 1 cut(s) | 609 |
| Eco57I | CTGAAG | 2 cut(s) | 38, 782 |
| Eco88I | CYCGRG | 1 cut(s) | 398 |
| EcoICRI | GAGCTC | 1 cut(s) | 609 |
| EcoRV | GATATC | 1 cut(s) | 1063 |
| EcoT22I | ATGCAT | 1 cut(s) | 984 |
| EcoT38I | GRGCYC | 2 cut(s) | 328, 611 |
| Esp3I | CGTCTC | 1 cut(s) | 959 |
| FaeI | CATG | 9 cut(s) | 244, 363, 529, 571, 587, 937, 961, 982, 1084 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 248, 280 |
| FaqI | GGGAC | 1 cut(s) | 377 |
| FatI | CATG | 9 cut(s) | 240, 359, 525, 567, 583, 933, 957, 978, 1080 |
| FauI | CCCGC | 1 cut(s) | 802 |
| FbaI | TGATCA | 3 cut(s) | 664, 682, 871 |
| Fnu4HI | GCNGC | 3 cut(s) | 474, 962, 995 |
| FokI | GGATG | 4 cut(s) | 137, 520, 775, 916 |
| FriOI | GRGCYC | 2 cut(s) | 328, 611 |
| Fsp4HI | GCNGC | 3 cut(s) | 474, 962, 995 |
| GlaI | GCGC | 1 cut(s) | 951 |
| GluI | GCNGC | 3 cut(s) | 474, 962, 995 |
| GsuI | CTGGAG | 2 cut(s) | 153, 623 |
| HaeIII | GGCC | 5 cut(s) | 147, 166, 187, 254, 347 |
| HapII | CCGG | 1 cut(s) | 251 |
| HgaI | GACGC | 1 cut(s) | 941 |
| HhaI | GCGC | 1 cut(s) | 952 |
| Hin1II | CATG | 9 cut(s) | 244, 363, 529, 571, 587, 937, 961, 982, 1084 |
| Hin6I | GCGC | 1 cut(s) | 950 |
| HinP1I | GCGC | 1 cut(s) | 950 |
| HindIII | AAGCTT | 1 cut(s) | 428 |
| HinfI | GANTC | 4 cut(s) | 391, 434, 533, 815 |
| HpaII | CCGG | 1 cut(s) | 251 |
| HphI | GGTGA | 2 cut(s) | 542, 831 |
| Hpy188I | TCNGA | 7 cut(s) | 199, 277, 388, 682, 709, 744, 987 |
| Hpy188III | TCNNGA | 5 cut(s) | 48, 170, 410, 584, 1081 |
| HpyAV | CCTTC | 4 cut(s) | 6, 85, 274, 687 |
| HpyCH4III | ACNGT | 3 cut(s) | 628, 860, 869 |
| HpyCH4IV | ACGT | 2 cut(s) | 59, 370 |
| HpyCH4V | TGCA | 8 cut(s) | 132, 571, 650, 961, 968, 982, 994, 1027 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 243, 958, 970, 979 |
| HpyF3I | CTNAG | 3 cut(s) | 426, 920, 1011 |
| HpySE526I | ACGT | 2 cut(s) | 59, 370 |
| Hsp92II | CATG | 9 cut(s) | 244, 363, 529, 571, 587, 937, 961, 982, 1084 |
| HspAI | GCGC | 1 cut(s) | 950 |
| Ksp22I | TGATCA | 3 cut(s) | 664, 682, 871 |
| Kzo9I | GATC | 9 cut(s) | 44, 160, 208, 574, 664, 682, 709, 871, 1048 |
| LmnI | GCTCC | 5 cut(s) | 470, 550, 642, 739, 929 |
| Lsp1109I | GCAGC | 3 cut(s) | 460, 973, 1006 |
| LweI | GCATC | 4 cut(s) | 141, 412, 981, 991 |
| MaeII | ACGT | 2 cut(s) | 59, 370 |
| MaeIII | GTNAC | 1 cut(s) | 490 |
| MalI | GATC | 9 cut(s) | 46, 162, 210, 576, 666, 684, 711, 873, 1050 |
| MboI | GATC | 9 cut(s) | 44, 160, 208, 574, 664, 682, 709, 871, 1048 |
| MboII | GAAGA | 6 cut(s) | 31, 100, 599, 788, 1058, 1070 |
| MflI | RGATCY | 1 cut(s) | 44 |
| MhlI | GDGCHC | 4 cut(s) | 328, 611, 829, 975 |
| MluCI | AATT | 5 cut(s) | 193, 416, 559, 703, 862 |
| MlyI | GAGTC | 1 cut(s) | 443 |
| MmeI | TCCRAC | 1 cut(s) | 255 |
| MnlI | CCTC | 9 cut(s) | 177, 337, 394, 456, 583, 766, 841, 927, 937 |
| Mph1103I | ATGCAT | 1 cut(s) | 984 |
| MroXI | GAANNNNTTC | 1 cut(s) | 263 |
| MseI | TTAA | 1 cut(s) | 456 |
| MslI | CAYNNNNRTG | 2 cut(s) | 582, 945 |
| MspI | CCGG | 1 cut(s) | 251 |
| MvnI | CGCG | 2 cut(s) | 9, 952 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 243, 958, 970, 979 |
| NdeII | GATC | 9 cut(s) | 44, 160, 208, 574, 664, 682, 709, 871, 1048 |
| NlaIII | CATG | 9 cut(s) | 244, 363, 529, 571, 587, 937, 961, 982, 1084 |
| NlaIV | GGNNCC | 3 cut(s) | 188, 552, 735 |
| NsiI | ATGCAT | 1 cut(s) | 984 |
| NspI | RCATGY | 2 cut(s) | 571, 982 |
| PaeR7I | CTCGAG | 1 cut(s) | 398 |
| PagI | TCATGA | 2 cut(s) | 583, 1080 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 372 |
| PdmI | GAANNNNTTC | 1 cut(s) | 263 |
| PfeI | GAWTC | 3 cut(s) | 391, 533, 815 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1075 |
| PkrI | GCNGC | 3 cut(s) | 475, 963, 996 |
| Ple19I | CGATCG | 1 cut(s) | 211 |
| PleI | GAGTC | 1 cut(s) | 442 |
| PpsI | GAGTC | 1 cut(s) | 442 |
| Psp124BI | GAGCTC | 1 cut(s) | 611 |
| Psp1406I | AACGTT | 1 cut(s) | 59 |
| PspN4I | GGNNCC | 3 cut(s) | 188, 552, 735 |
| PspPI | GGNCC | 6 cut(s) | 146, 186, 277, 289, 592, 914 |
| PspXI | VCTCGAGB | 1 cut(s) | 398 |
| PstI | CTGCAG | 1 cut(s) | 970 |
| PsuI | RGATCY | 1 cut(s) | 44 |
| PvuI | CGATCG | 1 cut(s) | 211 |
| RsaI | GTAC | 4 cut(s) | 227, 353, 803, 1055 |
| RsaNI | GTAC | 4 cut(s) | 226, 352, 802, 1054 |
| RseI | CAYNNNNRTG | 2 cut(s) | 582, 945 |
| SacI | GAGCTC | 1 cut(s) | 611 |
| SaqAI | TTAA | 1 cut(s) | 456 |
| SatI | GCNGC | 3 cut(s) | 474, 962, 995 |
| Sau3AI | GATC | 9 cut(s) | 44, 160, 208, 574, 664, 682, 709, 871, 1048 |
| Sau96I | GGNCC | 6 cut(s) | 146, 186, 277, 289, 592, 914 |
| SchI | GAGTC | 1 cut(s) | 443 |
| SduI | GDGCHC | 4 cut(s) | 328, 611, 829, 975 |
| SfaNI | GCATC | 4 cut(s) | 141, 412, 981, 991 |
| SfcI | CTRYAG | 2 cut(s) | 787, 966 |
| Sfr274I | CTCGAG | 1 cut(s) | 398 |
| SinI | GGWCC | 4 cut(s) | 277, 289, 592, 914 |
| SlaI | CTCGAG | 1 cut(s) | 398 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 582, 945 |
| SmlI | CTYRAG | 3 cut(s) | 398, 431, 1035 |
| SmoI | CTYRAG | 3 cut(s) | 398, 431, 1035 |
| Sse9I | AATT | 5 cut(s) | 193, 416, 559, 703, 862 |
| SsiI | CCGC | 2 cut(s) | 9, 809 |
| SspI | AATATT | 1 cut(s) | 910 |
| SstI | GAGCTC | 1 cut(s) | 611 |
| TaaI | ACNGT | 3 cut(s) | 628, 860, 869 |
| TaiI | ACGT | 2 cut(s) | 62, 373 |
| TaqI | TCGA | 7 cut(s) | 49, 207, 267, 375, 399, 481, 749 |
| TaqII | GACCGA | 1 cut(s) | 306 |
| TasI | AATT | 5 cut(s) | 193, 416, 559, 703, 862 |
| TatI | WGTACW | 2 cut(s) | 225, 801 |
| TfiI | GAWTC | 3 cut(s) | 391, 533, 815 |
| Tru1I | TTAA | 1 cut(s) | 456 |
| Tru9I | TTAA | 1 cut(s) | 456 |
| TscAI | CASTG | 4 cut(s) | 829, 863, 874, 975 |
| TseI | GCWGC | 3 cut(s) | 473, 961, 994 |
| TspDTI | ATGAA | 6 cut(s) | 101, 600, 893, 899, 996, 1097 |
| TspGWI | ACGGA | 1 cut(s) | 483 |
| TspRI | CASTG | 4 cut(s) | 829, 863, 874, 975 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1075 |
| VpaK11BI | GGWCC | 4 cut(s) | 277, 289, 592, 914 |
| XapI | RAATTY | 1 cut(s) | 193 |
| XceI | RCATGY | 2 cut(s) | 571, 982 |
| XhoI | CTCGAG | 1 cut(s) | 398 |
| XmnI | GAANNNNTTC | 1 cut(s) | 263 |
| Zsp2I | ATGCAT | 1 cut(s) | 984 |