Prupe.2G110900_v2.0.a1
MADS Family

MADS-box protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
16913576 .. 16914676
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G110900.1

Sequence Viewer

Length: 1101 bp
ATGGGTCGCGGAAGGCTGAAGATGGAACTCATTGCGAACGAGAGATCTCGAAAAACAACGTTTCAAAAGAGAAGCAAGGGAATGATGAAGAAGGCTTATGAGTTTTCAACTCTTTGCGAAGTGGATGTGTGCATCATCATTTACGGCCCAAAGCTGACTGATCGGCCTCCAGAACTCCAAACTTGGCCCCAAAATTCGGAACAAGTCGATCGTATAATCAACAAGTACAAAGCCAGCACCATGAGCAAACCGGCCAAGAAAACCTTCGATTTGTCGGACCTGTTGATGGACCGAAAGAACAAGGTCTATGCTGATATTTACAGAGCCCGTAAGGAGATGTATGAGGCCAAGTACCCAACATGGGACGAACGTATCGAAAGTTTCTCCGAGAATCAACTCGAGGCACTTCTGGATAAATTAGATGCTAAGCTTGAGTCTGGCAAGAGAACATTACTTAACAAGAGGAACGGAGCTGCTCATCGATTACTTGTAACGAAAAAAGAATGGATGGGTGGAAACCCTAACATGGGTGAATCATCAAGCCAAAAGGAGCCTTGTAATTCTTACATGCAGGATCATTATCATGAAGAGGACCAAAACCCTACGAGCTCTTTGAACAATAATACGGTGGATATGCTCCAGCCATTTGCAGTCTCATCATTTGATCATCATCAACCTTCTGATCAAACGCTTCCATTTGATAATTCAGATCAACATTTGAATAATCTTATGGCTCCTAATCCGAGTTCGATGGCAATGTGGATGTTGATGGAGGGCAACTATAACTATAGTAATCTTCAGTACAGGGCGGGGGATTCCAGCAGTGCTCATTCTCAATCACCATTGGAGGGGTATCACTGTAATTACAGTGATCAAATGAATATGAATATGATGATGACGAATAATAATATTGGTCCTCTAAGCTCCTCATCCATGAGCCACTACTATGCGCGTCTCATGCAGCCTGCAGTGCCCTACATGCATCAGATGATGCAGCCCAGTATTTCATCTCAGCAACTTCAAGTGCATACTTCTCAAGTCAAAGAAGATCAGTACGAAGATATCAACCAATATCTGGTCATGAACAACAAGATGGGTTAG

Protein Analysis

367

Amino Acids

42.31

Weight (kDa)

6.6

Isoelectric Point (pI)

55.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1075
AccII CGCG 2 cut(s) 9, 952
AciI CCGC 2 cut(s) 9, 809
AclI AACGTT 1 cut(s) 59
AclWI GGATC 1 cut(s) 582
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 1 cut(s) 193
AcuI CTGAAG 2 cut(s) 38, 782
AfaI GTAC 4 cut(s) 227, 353, 803, 1055
AfiI CCNNNNNNNGG 7 cut(s) 196, 286, 361, 526, 527, 848, 1075
AgsI TTSAA 5 cut(s) 65, 108, 616, 721, 1022
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AluBI AGCT 5 cut(s) 154, 430, 473, 609, 924
AluI AGCT 5 cut(s) 154, 430, 473, 609, 924
Alw21I GWGCWC 2 cut(s) 611, 829
Alw26I GTCTC 2 cut(s) 658, 959
AlwI GGATC 1 cut(s) 582
Ama87I CYCGRG 1 cut(s) 398
AoxI GGCC 5 cut(s) 145, 164, 185, 252, 345
ApeKI GCWGC 3 cut(s) 473, 961, 994
ApoI RAATTY 1 cut(s) 193
Asp700I GAANNNNTTC 1 cut(s) 263
AspLEI GCGC 1 cut(s) 952
AspS9I GGNCC 6 cut(s) 146, 186, 277, 289, 592, 914
AsuHPI GGTGA 2 cut(s) 542, 831
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 4 cut(s) 277, 289, 592, 914
BaeGI GKGCMC 1 cut(s) 975
BaeI ACNNNNGTAYC 2 cut(s) 355, 388
BanII GRGCYC 2 cut(s) 328, 611
Bbv12I GWGCWC 2 cut(s) 611, 829
BbvI GCAGC 3 cut(s) 460, 973, 1006
BccI CCATC 6 cut(s) 16, 280, 502, 745, 763, 1087
BceAI ACGGC 1 cut(s) 160
BclI TGATCA 3 cut(s) 664, 682, 871
BcoDI GTCTC 2 cut(s) 658, 959
BfmI CTRYAG 2 cut(s) 787, 966
BglII AGATCT 1 cut(s) 44
BisI GCNGC 3 cut(s) 474, 962, 995
BlpI GCTNAGC 1 cut(s) 426
BlsI GCNGC 3 cut(s) 475, 963, 996
Bme18I GGWCC 4 cut(s) 277, 289, 592, 914
BmeT110I CYCGRG 1 cut(s) 398
BmgT120I GGNCC 6 cut(s) 146, 186, 277, 289, 592, 914
BmiI GGNNCC 3 cut(s) 188, 552, 735
BmrI ACTGGG 1 cut(s) 993
BmsI GCATC 4 cut(s) 141, 412, 981, 991
BmuI ACTGGG 1 cut(s) 993
BpmI CTGGAG 2 cut(s) 153, 623
Bpu1102I GCTNAGC 1 cut(s) 426
BpuEI CTTGAG 2 cut(s) 452, 1020
Bsa29I ATCGAT 1 cut(s) 481
BsaBI GATNNNNATC 2 cut(s) 579, 669
Bsc4I CCNNNNNNNGG 7 cut(s) 196, 286, 361, 526, 527, 848, 1075
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 999
Bse3DI GCAATG 2 cut(s) 30, 762
Bse8I GATNNNNATC 2 cut(s) 579, 669
BseCI ATCGAT 1 cut(s) 481
BseGI GGATG 4 cut(s) 130, 513, 768, 929
BseJI GATNNNNATC 2 cut(s) 579, 669
BseLI CCNNNNNNNGG 7 cut(s) 196, 286, 361, 526, 527, 848, 1075
BseMI GCAATG 2 cut(s) 30, 762
BseMII CTCAG 1 cut(s) 1025
BseNI ACTGG 1 cut(s) 999
BseRI GAGGAG 1 cut(s) 916
BseSI GKGCMC 1 cut(s) 975
BseXI GCAGC 3 cut(s) 460, 973, 1006
Bsh1236I CGCG 2 cut(s) 9, 952
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 5 cut(s) 147, 166, 187, 254, 347
BshVI ATCGAT 1 cut(s) 481
BsiEI CGRYCG 1 cut(s) 211
BsiHKAI GWGCWC 2 cut(s) 611, 829
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 1 cut(s) 251
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 7 cut(s) 196, 286, 361, 526, 527, 848, 1075
BsmAI GTCTC 2 cut(s) 658, 959
BsmBI CGTCTC 1 cut(s) 959
BsmFI GGGAC 1 cut(s) 377
BsnI GGCC 5 cut(s) 147, 166, 187, 254, 347
BsoBI CYCGRG 1 cut(s) 398
Bsp1286I GDGCHC 4 cut(s) 328, 611, 829, 975
Bsp143I GATC 9 cut(s) 44, 160, 208, 574, 664, 682, 709, 871, 1048
Bsp1720I GCTNAGC 1 cut(s) 426
BspACI CCGC 2 cut(s) 9, 809
BspANI GGCC 5 cut(s) 147, 166, 187, 254, 347
BspCNI CTCAG 1 cut(s) 1024
BspDI ATCGAT 1 cut(s) 481
BspFNI CGCG 2 cut(s) 9, 952
BspHI TCATGA 2 cut(s) 583, 1080
BspLI GGNNCC 3 cut(s) 188, 552, 735
BspMAI CTGCAG 1 cut(s) 970
BspPI GGATC 1 cut(s) 582
BsrDI GCAATG 2 cut(s) 30, 762
BsrFI RCCGGY 1 cut(s) 250
BsrI ACTGG 1 cut(s) 999
BssAI RCCGGY 1 cut(s) 250
BssMI GATC 9 cut(s) 44, 160, 208, 574, 664, 682, 709, 871, 1048
Bst4CI ACNGT 3 cut(s) 628, 860, 869
Bst6I CTCTTC 1 cut(s) 582
BstC8I GCNNGC 2 cut(s) 235, 966
BstDEI CTNAG 3 cut(s) 426, 920, 1011
BstF5I GGATG 4 cut(s) 130, 513, 768, 929
BstFNI CGCG 2 cut(s) 9, 952
BstHHI GCGC 1 cut(s) 952
BstKTI GATC 9 cut(s) 47, 163, 211, 577, 667, 685, 712, 874, 1051
BstMAI GTCTC 2 cut(s) 658, 959
BstMBI GATC 9 cut(s) 44, 160, 208, 574, 664, 682, 709, 871, 1048
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 4 cut(s) 243, 958, 970, 979
BstNSI RCATGY 2 cut(s) 571, 982
BstSFI CTRYAG 2 cut(s) 787, 966
BstSLI GKGCMC 1 cut(s) 975
BstUI CGCG 2 cut(s) 9, 952
BstV1I GCAGC 3 cut(s) 460, 973, 1006
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
Bsu15I ATCGAT 1 cut(s) 481
BsuRI GGCC 5 cut(s) 147, 166, 187, 254, 347
BsuTUI ATCGAT 1 cut(s) 481
BtsCI GGATG 4 cut(s) 130, 513, 768, 929
BtsI GCAGTG 2 cut(s) 829, 975
BtsIMutI CAGTG 4 cut(s) 829, 856, 874, 975
Cac8I GCNNGC 2 cut(s) 235, 966
CciI TCATGA 2 cut(s) 583, 1080
CfoI GCGC 1 cut(s) 952
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 6 cut(s) 146, 186, 277, 289, 592, 914
ClaI ATCGAT 1 cut(s) 481
CseI GACGC 1 cut(s) 941
Csp6I GTAC 4 cut(s) 226, 352, 802, 1054
CviAII CATG 9 cut(s) 241, 360, 526, 568, 584, 934, 958, 979, 1081
CviQI GTAC 4 cut(s) 226, 352, 802, 1054
DdeI CTNAG 3 cut(s) 426, 920, 1011
DpnI GATC 9 cut(s) 46, 162, 210, 576, 666, 684, 711, 873, 1050
DpnII GATC 9 cut(s) 44, 160, 208, 574, 664, 682, 709, 871, 1048
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Ecl136II GAGCTC 1 cut(s) 609
Eco24I GRGCYC 2 cut(s) 328, 611
Eco32I GATATC 1 cut(s) 1063
Eco47I GGWCC 4 cut(s) 277, 289, 592, 914
Eco53kI GAGCTC 1 cut(s) 609
Eco57I CTGAAG 2 cut(s) 38, 782
Eco88I CYCGRG 1 cut(s) 398
EcoICRI GAGCTC 1 cut(s) 609
EcoRV GATATC 1 cut(s) 1063
EcoT22I ATGCAT 1 cut(s) 984
EcoT38I GRGCYC 2 cut(s) 328, 611
Esp3I CGTCTC 1 cut(s) 959
FaeI CATG 9 cut(s) 244, 363, 529, 571, 587, 937, 961, 982, 1084
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FaqI GGGAC 1 cut(s) 377
FatI CATG 9 cut(s) 240, 359, 525, 567, 583, 933, 957, 978, 1080
FauI CCCGC 1 cut(s) 802
FbaI TGATCA 3 cut(s) 664, 682, 871
Fnu4HI GCNGC 3 cut(s) 474, 962, 995
FokI GGATG 4 cut(s) 137, 520, 775, 916
FriOI GRGCYC 2 cut(s) 328, 611
Fsp4HI GCNGC 3 cut(s) 474, 962, 995
GlaI GCGC 1 cut(s) 951
GluI GCNGC 3 cut(s) 474, 962, 995
GsuI CTGGAG 2 cut(s) 153, 623
HaeIII GGCC 5 cut(s) 147, 166, 187, 254, 347
HapII CCGG 1 cut(s) 251
HgaI GACGC 1 cut(s) 941
HhaI GCGC 1 cut(s) 952
Hin1II CATG 9 cut(s) 244, 363, 529, 571, 587, 937, 961, 982, 1084
Hin6I GCGC 1 cut(s) 950
HinP1I GCGC 1 cut(s) 950
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 4 cut(s) 391, 434, 533, 815
HpaII CCGG 1 cut(s) 251
HphI GGTGA 2 cut(s) 542, 831
Hpy188I TCNGA 7 cut(s) 199, 277, 388, 682, 709, 744, 987
Hpy188III TCNNGA 5 cut(s) 48, 170, 410, 584, 1081
HpyAV CCTTC 4 cut(s) 6, 85, 274, 687
HpyCH4III ACNGT 3 cut(s) 628, 860, 869
HpyCH4IV ACGT 2 cut(s) 59, 370
HpyCH4V TGCA 8 cut(s) 132, 571, 650, 961, 968, 982, 994, 1027
HpyF10VI GCNNNNNNNGC 4 cut(s) 243, 958, 970, 979
HpyF3I CTNAG 3 cut(s) 426, 920, 1011
HpySE526I ACGT 2 cut(s) 59, 370
Hsp92II CATG 9 cut(s) 244, 363, 529, 571, 587, 937, 961, 982, 1084
HspAI GCGC 1 cut(s) 950
Ksp22I TGATCA 3 cut(s) 664, 682, 871
Kzo9I GATC 9 cut(s) 44, 160, 208, 574, 664, 682, 709, 871, 1048
LmnI GCTCC 5 cut(s) 470, 550, 642, 739, 929
Lsp1109I GCAGC 3 cut(s) 460, 973, 1006
LweI GCATC 4 cut(s) 141, 412, 981, 991
MaeII ACGT 2 cut(s) 59, 370
MaeIII GTNAC 1 cut(s) 490
MalI GATC 9 cut(s) 46, 162, 210, 576, 666, 684, 711, 873, 1050
MboI GATC 9 cut(s) 44, 160, 208, 574, 664, 682, 709, 871, 1048
MboII GAAGA 6 cut(s) 31, 100, 599, 788, 1058, 1070
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 4 cut(s) 328, 611, 829, 975
MluCI AATT 5 cut(s) 193, 416, 559, 703, 862
MlyI GAGTC 1 cut(s) 443
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 9 cut(s) 177, 337, 394, 456, 583, 766, 841, 927, 937
Mph1103I ATGCAT 1 cut(s) 984
MroXI GAANNNNTTC 1 cut(s) 263
MseI TTAA 1 cut(s) 456
MslI CAYNNNNRTG 2 cut(s) 582, 945
MspI CCGG 1 cut(s) 251
MvnI CGCG 2 cut(s) 9, 952
MwoI GCNNNNNNNGC 4 cut(s) 243, 958, 970, 979
NdeII GATC 9 cut(s) 44, 160, 208, 574, 664, 682, 709, 871, 1048
NlaIII CATG 9 cut(s) 244, 363, 529, 571, 587, 937, 961, 982, 1084
NlaIV GGNNCC 3 cut(s) 188, 552, 735
NsiI ATGCAT 1 cut(s) 984
NspI RCATGY 2 cut(s) 571, 982
PaeR7I CTCGAG 1 cut(s) 398
PagI TCATGA 2 cut(s) 583, 1080
PcsI WCGNNNNNNNCGW 1 cut(s) 372
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 3 cut(s) 391, 533, 815
PflMI CCANNNNNTGG 1 cut(s) 1075
PkrI GCNGC 3 cut(s) 475, 963, 996
Ple19I CGATCG 1 cut(s) 211
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
Psp124BI GAGCTC 1 cut(s) 611
Psp1406I AACGTT 1 cut(s) 59
PspN4I GGNNCC 3 cut(s) 188, 552, 735
PspPI GGNCC 6 cut(s) 146, 186, 277, 289, 592, 914
PspXI VCTCGAGB 1 cut(s) 398
PstI CTGCAG 1 cut(s) 970
PsuI RGATCY 1 cut(s) 44
PvuI CGATCG 1 cut(s) 211
RsaI GTAC 4 cut(s) 227, 353, 803, 1055
RsaNI GTAC 4 cut(s) 226, 352, 802, 1054
RseI CAYNNNNRTG 2 cut(s) 582, 945
SacI GAGCTC 1 cut(s) 611
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 3 cut(s) 474, 962, 995
Sau3AI GATC 9 cut(s) 44, 160, 208, 574, 664, 682, 709, 871, 1048
Sau96I GGNCC 6 cut(s) 146, 186, 277, 289, 592, 914
SchI GAGTC 1 cut(s) 443
SduI GDGCHC 4 cut(s) 328, 611, 829, 975
SfaNI GCATC 4 cut(s) 141, 412, 981, 991
SfcI CTRYAG 2 cut(s) 787, 966
Sfr274I CTCGAG 1 cut(s) 398
SinI GGWCC 4 cut(s) 277, 289, 592, 914
SlaI CTCGAG 1 cut(s) 398
SmiMI CAYNNNNRTG 2 cut(s) 582, 945
SmlI CTYRAG 3 cut(s) 398, 431, 1035
SmoI CTYRAG 3 cut(s) 398, 431, 1035
Sse9I AATT 5 cut(s) 193, 416, 559, 703, 862
SsiI CCGC 2 cut(s) 9, 809
SspI AATATT 1 cut(s) 910
SstI GAGCTC 1 cut(s) 611
TaaI ACNGT 3 cut(s) 628, 860, 869
TaiI ACGT 2 cut(s) 62, 373
TaqI TCGA 7 cut(s) 49, 207, 267, 375, 399, 481, 749
TaqII GACCGA 1 cut(s) 306
TasI AATT 5 cut(s) 193, 416, 559, 703, 862
TatI WGTACW 2 cut(s) 225, 801
TfiI GAWTC 3 cut(s) 391, 533, 815
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 4 cut(s) 829, 863, 874, 975
TseI GCWGC 3 cut(s) 473, 961, 994
TspDTI ATGAA 6 cut(s) 101, 600, 893, 899, 996, 1097
TspGWI ACGGA 1 cut(s) 483
TspRI CASTG 4 cut(s) 829, 863, 874, 975
Van91I CCANNNNNTGG 1 cut(s) 1075
VpaK11BI GGWCC 4 cut(s) 277, 289, 592, 914
XapI RAATTY 1 cut(s) 193
XceI RCATGY 2 cut(s) 571, 982
XhoI CTCGAG 1 cut(s) 398
XmnI GAANNNNTTC 1 cut(s) 263
Zsp2I ATGCAT 1 cut(s) 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.