FvH4_3g19300
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000326
Physical Location & Seq
Reverse (-)
12467637 .. 12468524
888 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19300.t1

Sequence Viewer

Length: 888 bp
ATGGTTCGATCCAATTCAAGGTTATCTTGGGACCTAATACAGAATGAAAGGTCTCGCAAGGTTACGTTTCGAAAAAGAAAGACTGGATTGTTGAAGAAAGCTTATGAGTTGAACACTCTTTGTGATGTGAAGGGGTGCGTGATCATATACGAAAGCAATTCTGATGGCCAATTGCTCCAACCCGAAATCTATCCAAAACAGGAGGAGGTGAAGCAAATCATCAATAAGTATGCATCTTGTTCATCGAAGAGAGTTCACAATTTGGAGGACTTCTACGCCGAGAAAATTGAACAACTGCAAACAAAGATTAAGAAACTACGCCGGAAGAATGATGAACTTCAGTTTCCAACGTGCGATGATAGGATGAATGCGCTATCATTAGATCAATTGCTTAGTCTTGCACAAAAGCTGGATCACAAAATTGAAGCTGTAAGGAGATCGATGCAGTGTGCTATTAATCATGAAGGTAGACTAGGGCCAATGCCTTTGTATCACAATGGCAGGGCTCTACCGGAGGAGCAGAGCTCTGCACAAGCGCAAGGCTTGTTTTATGACAATCTTGATCATCAGATGCTCGCATTCGATTCTCGGATGCTTGCATTCGAGCATCAGAGCAACAATGGTTGGAATCATTCCGCAGGCATGACTCCGTTGGCCGAGTATGCTCCATTGACATTAACCTTGCCGCCGAACTGTCATGATGTAACATTCCATAACCATGCACCACCATATCCGATGTCGACAAGTGCTCTATTTCCTCCACACTTTGTTTCATCTGATAAGCTTCCTCTATCTCTTGGTTCAGCCCAGCAACCAAGTCTGGAGAACACCAATGTTTCATCATCTCAGTCTCCTGAAGACTTGAGAAGGCTTGAGGGTGATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

296

Amino Acids

33.62

Weight (kDa)

7.17

Isoelectric Point (pI)

71.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 13 - 53 1.2e-17 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 469, 740
AciI CCGC 2 cut(s) 636, 686
AclWI GGATC 2 cut(s) 3, 420
AcoI YGGCCR 2 cut(s) 166, 654
AcuI CTGAAG 2 cut(s) 323, 876
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 5 cut(s) 18, 94, 112, 290, 425
AluBI AGCT 5 cut(s) 101, 409, 428, 525, 784
AluI AGCT 5 cut(s) 101, 409, 428, 525, 784
Alw21I GWGCWC 2 cut(s) 527, 751
Alw26I GTCTC 2 cut(s) 57, 855
AlwI GGATC 2 cut(s) 3, 420
AoxI GGCC 3 cut(s) 166, 476, 654
AseI ATTAAT 1 cut(s) 456
AspLEI GCGC 2 cut(s) 373, 538
AspS9I GGNCC 2 cut(s) 31, 476
AsuHPI GGTGA 1 cut(s) 220
AsuII TTCGAA 1 cut(s) 70
AvaII GGWCC 1 cut(s) 31
BalI TGGCCA 1 cut(s) 168
BanII GRGCYC 2 cut(s) 508, 527
BbsI GAAGAC 1 cut(s) 864
Bbv12I GWGCWC 2 cut(s) 527, 751
BccI CCATC 1 cut(s) 158
BclI TGATCA 2 cut(s) 141, 562
BcoDI GTCTC 2 cut(s) 57, 855
BfaI CTAG 2 cut(s) 473, 886
BisI GCNGC 1 cut(s) 686
BlsI GCNGC 1 cut(s) 687
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 2 cut(s) 31, 476
BmiI GGNNCC 1 cut(s) 32
BmsI GCATC 5 cut(s) 242, 432, 561, 582, 616
BpiI GAAGAC 1 cut(s) 864
BplI GAGNNNNNCTC 2 cut(s) 509, 541
BpmI CTGGAG 1 cut(s) 842
Bpu14I TTCGAA 1 cut(s) 70
BpuEI CTTGAG 1 cut(s) 883
Bsa29I ATCGAT 1 cut(s) 440
BsaI GGTCTC 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 511
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 88
BseCI ATCGAT 1 cut(s) 440
BseGI GGATG 2 cut(s) 369, 597
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 860
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 2 cut(s) 218, 530
BseYI CCCAGC 1 cut(s) 807
BsgI GTGCAG 1 cut(s) 513
BshFI GGCC 3 cut(s) 168, 478, 656
BshVI ATCGAT 1 cut(s) 440
BsiHKAI GWGCWC 2 cut(s) 527, 751
BsiSI CCGG 2 cut(s) 322, 512
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 2 cut(s) 57, 855
BsmFI GGGAC 1 cut(s) 44
BsmI GAATGC 3 cut(s) 373, 578, 599
BsnI GGCC 3 cut(s) 168, 478, 656
Bso31I GGTCTC 1 cut(s) 57
Bsp119I TTCGAA 1 cut(s) 70
Bsp1286I GDGCHC 3 cut(s) 508, 527, 751
Bsp143I GATC 6 cut(s) 8, 141, 382, 412, 437, 562
BspACI CCGC 2 cut(s) 636, 686
BspANI GGCC 3 cut(s) 168, 478, 656
BspCNI CTCAG 1 cut(s) 859
BspDI ATCGAT 1 cut(s) 440
BspHI TCATGA 2 cut(s) 460, 697
BspLI GGNNCC 1 cut(s) 32
BspPI GGATC 2 cut(s) 3, 420
BspT104I TTCGAA 1 cut(s) 70
BspTNI GGTCTC 1 cut(s) 57
BsrI ACTGG 1 cut(s) 88
BssMI GATC 6 cut(s) 8, 141, 382, 412, 437, 562
Bst4CI ACNGT 1 cut(s) 695
Bst6I CTCTTC 1 cut(s) 242
BstBI TTCGAA 1 cut(s) 70
BstC8I GCNNGC 3 cut(s) 576, 597, 640
BstDEI CTNAG 2 cut(s) 392, 846
BstF5I GGATG 2 cut(s) 369, 597
BstHHI GCGC 2 cut(s) 373, 538
BstKTI GATC 6 cut(s) 11, 144, 385, 415, 440, 565
BstMAI GTCTC 2 cut(s) 57, 855
BstMBI GATC 6 cut(s) 8, 141, 382, 412, 437, 562
BstMWI GCNNNNNNNGC 1 cut(s) 662
BstV2I GAAGAC 1 cut(s) 864
Bsu15I ATCGAT 1 cut(s) 440
BsuRI GGCC 3 cut(s) 168, 478, 656
BsuTUI ATCGAT 1 cut(s) 440
BtgZI GCGATG 1 cut(s) 369
BtsCI GGATG 2 cut(s) 369, 597
BtsI GCAGTG 1 cut(s) 452
BtsIMutI CAGTG 1 cut(s) 452
Cac8I GCNNGC 3 cut(s) 576, 597, 640
CciI TCATGA 2 cut(s) 460, 697
CfoI GCGC 2 cut(s) 373, 538
Cfr13I GGNCC 2 cut(s) 31, 476
ClaI ATCGAT 1 cut(s) 440
CviAII CATG 4 cut(s) 461, 643, 698, 719
DdeI CTNAG 2 cut(s) 392, 846
DpnI GATC 6 cut(s) 10, 143, 384, 414, 439, 564
DpnII GATC 6 cut(s) 8, 141, 382, 412, 437, 562
EaeI YGGCCR 2 cut(s) 166, 654
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
Ecl136II GAGCTC 1 cut(s) 525
Eco24I GRGCYC 2 cut(s) 508, 527
Eco31I GGTCTC 1 cut(s) 57
Eco32I GATATC 1 cut(s) 883
Eco47I GGWCC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 525
Eco57I CTGAAG 2 cut(s) 323, 876
EcoICRI GAGCTC 1 cut(s) 525
EcoO109I RGGNCCY 1 cut(s) 31
EcoRV GATATC 1 cut(s) 883
EcoT22I ATGCAT 1 cut(s) 235
EcoT38I GRGCYC 2 cut(s) 508, 527
FaeI CATG 4 cut(s) 464, 646, 701, 722
FalI AAGNNNNNCTT 2 cut(s) 10, 42
FaqI GGGAC 1 cut(s) 44
FatI CATG 4 cut(s) 460, 642, 697, 718
FbaI TGATCA 2 cut(s) 141, 562
FblI GTMKAC 2 cut(s) 469, 740
Fnu4HI GCNGC 1 cut(s) 686
FokI GGATG 2 cut(s) 376, 604
FriOI GRGCYC 2 cut(s) 508, 527
Fsp4HI GCNGC 1 cut(s) 686
FspBI CTAG 2 cut(s) 473, 886
GlaI GCGC 2 cut(s) 372, 537
GluI GCNGC 1 cut(s) 686
GsaI CCCAGC 1 cut(s) 811
GsuI CTGGAG 1 cut(s) 842
HaeIII GGCC 3 cut(s) 168, 478, 656
HapII CCGG 2 cut(s) 322, 512
HhaI GCGC 2 cut(s) 373, 538
Hin1II CATG 4 cut(s) 464, 646, 701, 722
Hin6I GCGC 2 cut(s) 371, 536
HinP1I GCGC 2 cut(s) 371, 536
HincII GTYRAC 1 cut(s) 741
HindII GTYRAC 1 cut(s) 741
HindIII AAGCTT 2 cut(s) 99, 782
HinfI GANTC 3 cut(s) 584, 628, 646
HpaII CCGG 2 cut(s) 322, 512
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 3 cut(s) 256, 470, 741
Hpy188I TCNGA 6 cut(s) 163, 570, 591, 612, 735, 778
Hpy188III TCNNGA 5 cut(s) 461, 560, 698, 821, 854
Hpy8I GTNNAC 3 cut(s) 256, 470, 741
HpyAV CCTTC 3 cut(s) 124, 458, 861
HpyCH4III ACNGT 1 cut(s) 695
HpyCH4IV ACGT 2 cut(s) 65, 350
HpyCH4V TGCA 7 cut(s) 233, 298, 401, 445, 530, 599, 722
HpyF10VI GCNNNNNNNGC 1 cut(s) 662
HpyF3I CTNAG 2 cut(s) 392, 846
HpySE526I ACGT 2 cut(s) 65, 350
Hsp92II CATG 4 cut(s) 464, 646, 701, 722
HspAI GCGC 2 cut(s) 371, 536
Ksp22I TGATCA 2 cut(s) 141, 562
Kzo9I GATC 6 cut(s) 8, 141, 382, 412, 437, 562
LmnI GCTCC 3 cut(s) 180, 517, 670
LweI GCATC 5 cut(s) 242, 432, 561, 582, 616
MaeI CTAG 2 cut(s) 473, 886
MaeII ACGT 2 cut(s) 65, 350
MaeIII GTNAC 2 cut(s) 61, 703
MalI GATC 6 cut(s) 10, 143, 384, 414, 439, 564
MboI GATC 6 cut(s) 8, 141, 382, 412, 437, 562
MboII GAAGA 4 cut(s) 106, 259, 337, 869
MfeI CAATTG 2 cut(s) 170, 386
MhlI GDGCHC 3 cut(s) 508, 527, 751
MlsI TGGCCA 1 cut(s) 168
MluCI AATT 7 cut(s) 13, 157, 170, 259, 285, 386, 420
MluNI TGGCCA 1 cut(s) 168
MlyI GAGTC 1 cut(s) 640
MmeI TCCRAC 3 cut(s) 202, 371, 605
MnlI CCTC 7 cut(s) 196, 199, 259, 508, 768, 798, 868
Mox20I TGGCCA 1 cut(s) 168
Mph1103I ATGCAT 1 cut(s) 235
MscI TGGCCA 1 cut(s) 168
MseI TTAA 3 cut(s) 309, 456, 677
MslI CAYNNNNRTG 1 cut(s) 717
Msp20I TGGCCA 1 cut(s) 168
MspI CCGG 2 cut(s) 322, 512
MunI CAATTG 2 cut(s) 170, 386
Mva1269I GAATGC 3 cut(s) 373, 578, 599
MwoI GCNNNNNNNGC 1 cut(s) 662
NdeII GATC 6 cut(s) 8, 141, 382, 412, 437, 562
NlaIII CATG 4 cut(s) 464, 646, 701, 722
NlaIV GGNNCC 1 cut(s) 32
NmeAIII GCCGAG 2 cut(s) 304, 682
NsiI ATGCAT 1 cut(s) 235
NspV TTCGAA 1 cut(s) 70
PagI TCATGA 2 cut(s) 460, 697
PctI GAATGC 3 cut(s) 373, 578, 599
PfeI GAWTC 2 cut(s) 584, 628
PkrI GCNGC 1 cut(s) 687
PleI GAGTC 1 cut(s) 640
PpsI GAGTC 1 cut(s) 640
PpuMI RGGWCCY 1 cut(s) 31
PshBI ATTAAT 1 cut(s) 456
Psp124BI GAGCTC 1 cut(s) 527
Psp5II RGGWCCY 1 cut(s) 31
PspFI CCCAGC 1 cut(s) 807
PspN4I GGNNCC 1 cut(s) 32
PspPI GGNCC 2 cut(s) 31, 476
PspPPI RGGWCCY 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 717
SacI GAGCTC 1 cut(s) 527
SalI GTCGAC 1 cut(s) 739
SaqAI TTAA 3 cut(s) 309, 456, 677
SatI GCNGC 1 cut(s) 686
Sau3AI GATC 6 cut(s) 8, 141, 382, 412, 437, 562
Sau96I GGNCC 2 cut(s) 31, 476
SchI GAGTC 1 cut(s) 640
SduI GDGCHC 3 cut(s) 508, 527, 751
SfaNI GCATC 5 cut(s) 242, 432, 561, 582, 616
SfuI TTCGAA 1 cut(s) 70
SinI GGWCC 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 717
SmlI CTYRAG 2 cut(s) 862, 872
SmoI CTYRAG 2 cut(s) 862, 872
Sse9I AATT 7 cut(s) 13, 157, 170, 259, 285, 386, 420
SsiI CCGC 2 cut(s) 636, 686
SspMI CTAG 2 cut(s) 473, 886
SstI GAGCTC 1 cut(s) 527
TaaI ACNGT 1 cut(s) 695
TaiI ACGT 2 cut(s) 68, 353
TaqI TCGA 7 cut(s) 7, 70, 245, 440, 582, 603, 740
TasI AATT 7 cut(s) 13, 157, 170, 259, 285, 386, 420
TauI GCSGC 1 cut(s) 688
TfiI GAWTC 2 cut(s) 584, 628
Tru1I TTAA 3 cut(s) 309, 456, 677
Tru9I TTAA 3 cut(s) 309, 456, 677
TscAI CASTG 1 cut(s) 452
TspDTI ATGAA 7 cut(s) 60, 231, 348, 380, 477, 762, 828
TspGWI ACGGA 1 cut(s) 639
TspRI CASTG 1 cut(s) 452
VpaK11BI GGWCC 1 cut(s) 31
VspI ATTAAT 1 cut(s) 456
XmiI GTMKAC 2 cut(s) 469, 740
XspI CTAG 2 cut(s) 473, 886
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.