Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Forward (+)

29180841 .. 29181500

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG306000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGACCCTCAAAGAAACATACAAGAACTATCGTCCAGTAAGAGTGATCGTAAAAAGGTTCGGGATCGAAAGAAGAATTTAATCAAGAAAGCCGAGGAGCTTTCAAAACTTTGTGGTGTTGATGTATGCTTGATCCTCTACCAACGTCAAAGTACTGTAGCAGAGACTTGGCCCCAAGATCCTGCGCAAGTCAAACGCATTATCACTGGGTACAAGGCAAACCCGGCAATCAGAGATGCTAGCATTCCTTCATTGGAGACAAGGGGTTTGGCAGAAACCAAGCCTCGAAAGTCAGATAGTGGTCGTGAGAATGTTATTAATAATTCCGATGAGGAGAGGGAGATGTTGTACCCGACATGGGATGATCGATTAGATTACTGTTCTGAGGACGAATTGTTTAGACTGGTTGCTTCCTTGGATGCAAAGCTAGAAGCTTCAACAAAGAGGATTGATTCACTATCGATGAAAAGCTGTAGCGGTTTTGTGACCCCAAAAAACAAAAACAGCAAAGCTGGTGCACTTGATCATCATGACAAGGTGAATTCGAACTTGAACTTGGTCCCTTTTCATGAGATTAATGATCTTGATGATCCAAGATCATCCAGAAACTACAGTAGTACTTCAACCATGCAATTCAGGAGGTCTCCTTATATGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

219

Amino Acids

25.0

Weight (kDa)

8.8

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	23 - 51	1.4e-09	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	186
AciI	CCGC	1 cut(s)	477
AclWI	GGATC	4 cut(s)	72, 127, 173, 584
AcsI	RAATTY	2 cut(s)	76, 541
AfaI	GTAC	4 cut(s)	154, 212, 350, 619
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	4 cut(s)	105, 438, 553, 624
AjuI	GAANNNNNNNTTGG	2 cut(s)	539, 571
AluBI	AGCT	5 cut(s)	100, 427, 434, 471, 512
AluI	AGCT	5 cut(s)	100, 427, 434, 471, 512
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	3 cut(s)	158, 251, 648
Alw44I	GTGCAC	1 cut(s)	516
AlwI	GGATC	4 cut(s)	72, 127, 173, 584
AoxI	GGCC	1 cut(s)	170
ApaLI	GTGCAC	1 cut(s)	516
ApoI	RAATTY	2 cut(s)	76, 541
ArsI	GACNNNNNNTTYG	2 cut(s)	250, 282
AseI	ATTAAT	2 cut(s)	318, 576
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	3 cut(s)	4, 171, 559
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	550
AsuII	TTCGAA	1 cut(s)	545
AsuNHI	GCTAGC	1 cut(s)	239
AvaII	GGWCC	2 cut(s)	4, 559
BaeGI	GKGCMC	1 cut(s)	520
Bbv12I	GWGCWC	1 cut(s)	520
BclI	TGATCA	1 cut(s)	523
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	3 cut(s)	158, 251, 648
BfaI	CTAG	2 cut(s)	240, 428
BfmI	CTRYAG	3 cut(s)	156, 472, 610
BmcAI	AGTACT	2 cut(s)	154, 619
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	2 cut(s)	4, 559
BmgT120I	GGNCC	3 cut(s)	4, 171, 559
BmiI	GGNNCC	3 cut(s)	6, 173, 561
BmrFI	CCNGG	1 cut(s)	224
BmrI	ACTGGG	1 cut(s)	216
BmsI	GCATC	2 cut(s)	226, 409
BmtI	GCTAGC	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	224
Bsa29I	ATCGAT	2 cut(s)	367, 461
BsaI	GGTCTC	1 cut(s)	648
BsaJI	CCNNGG	2 cut(s)	93, 414
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse1I	ACTGG	3 cut(s)	36, 211, 408
BseCI	ATCGAT	2 cut(s)	367, 461
BseDI	CCNNGG	2 cut(s)	93, 414
BseGI	GGATG	3 cut(s)	367, 424, 599
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	3 cut(s)	36, 211, 408
BseRI	GAGGAG	2 cut(s)	110, 347
BseSI	GKGCMC	1 cut(s)	520
BshFI	GGCC	1 cut(s)	172
BshVI	ATCGAT	2 cut(s)	367, 461
BsiHKAI	GWGCWC	1 cut(s)	520
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	545
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	3 cut(s)	158, 251, 648
BsmFI	GGGAC	1 cut(s)	545
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	172
Bso31I	GGTCTC	1 cut(s)	648
Bsp119I	TTCGAA	1 cut(s)	545
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp143I	GATC	9 cut(s)	46, 64, 132, 178, 364, 523, 580, 589, 596
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	376
BspDI	ATCGAT	2 cut(s)	367, 461
BspHI	TCATGA	2 cut(s)	529, 568
BspLI	GGNNCC	3 cut(s)	6, 173, 561
BspOI	GCTAGC	1 cut(s)	243
BspPI	GGATC	4 cut(s)	72, 127, 173, 584
BspT104I	TTCGAA	1 cut(s)	545
BspTNI	GGTCTC	1 cut(s)	648
BsrI	ACTGG	3 cut(s)	36, 211, 408
BssECI	CCNNGG	2 cut(s)	93, 414
BssMI	GATC	9 cut(s)	46, 64, 132, 178, 364, 523, 580, 589, 596
BssT1I	CCWWGG	1 cut(s)	414
Bst4CI	ACNGT	3 cut(s)	157, 380, 614
BstBI	TTCGAA	1 cut(s)	545
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	384
BstF5I	GGATG	3 cut(s)	367, 424, 599
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	9 cut(s)	49, 67, 135, 181, 367, 526, 583, 592, 599
BstMAI	GTCTC	3 cut(s)	158, 251, 648
BstMBI	GATC	9 cut(s)	46, 64, 132, 178, 364, 523, 580, 589, 596
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	222
BstSFI	CTRYAG	3 cut(s)	156, 472, 610
BstSLI	GKGCMC	1 cut(s)	520
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
Bsu15I	ATCGAT	2 cut(s)	367, 461
BsuRI	GGCC	1 cut(s)	172
BsuTUI	ATCGAT	2 cut(s)	367, 461
BtsCI	GGATG	3 cut(s)	367, 424, 599
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	241
CciI	TCATGA	2 cut(s)	529, 568
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	3 cut(s)	4, 171, 559
ClaI	ATCGAT	2 cut(s)	367, 461
Csp6I	GTAC	4 cut(s)	153, 211, 349, 618
CviAII	CATG	4 cut(s)	357, 530, 569, 628
CviJI	RGCY	8 cut(s)	92, 100, 172, 283, 427, 434, 471, 512
CviKI_1	RGCY	8 cut(s)	92, 100, 172, 283, 427, 434, 471, 512
CviQI	GTAC	4 cut(s)	153, 211, 349, 618
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	9 cut(s)	48, 66, 134, 180, 366, 525, 582, 591, 598
DpnII	GATC	9 cut(s)	46, 64, 132, 178, 364, 523, 580, 589, 596
Eco130I	CCWWGG	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	648
Eco47I	GGWCC	2 cut(s)	4, 559
EcoRI	GAATTC	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	4 cut(s)	360, 533, 572, 631
FaiI	YATR	8 cut(s)	20, 127, 358, 531, 570, 629, 651, 653
FaqI	GGGAC	1 cut(s)	545
FatI	CATG	4 cut(s)	356, 529, 568, 627
FbaI	TGATCA	1 cut(s)	523
FokI	GGATG	3 cut(s)	374, 431, 586
FspBI	CTAG	2 cut(s)	240, 428
FspI	TGCGCA	1 cut(s)	186
GlaI	GCGC	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	1 cut(s)	224
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	4 cut(s)	360, 533, 572, 631
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HindIII	AAGCTT	1 cut(s)	432
HinfI	GANTC	1 cut(s)	452
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	1 cut(s)	550
Hpy166II	GTNNAC	1 cut(s)	518
Hpy188I	TCNGA	4 cut(s)	233, 295, 328, 385
Hpy188III	TCNNGA	8 cut(s)	62, 85, 305, 530, 569, 584, 603, 637
Hpy8I	GTNNAC	1 cut(s)	518
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	3 cut(s)	157, 380, 614
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	4 cut(s)	422, 518, 631, 655
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	4 cut(s)	360, 533, 572, 631
HspAI	GCGC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	9 cut(s)	46, 64, 132, 178, 364, 523, 580, 589, 596
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	8 cut(s)	49, 192, 195, 237, 389, 498, 616, 622
LweI	GCATC	2 cut(s)	226, 409
MaeI	CTAG	2 cut(s)	240, 428
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	9 cut(s)	48, 66, 134, 180, 366, 525, 582, 591, 598
MboI	GATC	9 cut(s)	46, 64, 132, 178, 364, 523, 580, 589, 596
MboII	GAAGA	1 cut(s)	85
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	5 cut(s)	76, 322, 392, 541, 632
MnlI	CCTC	9 cut(s)	18, 88, 146, 294, 325, 330, 379, 438, 633
MseI	TTAA	3 cut(s)	80, 318, 576
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	224
Mva1269I	GAATGC	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	224
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	9 cut(s)	46, 64, 132, 178, 364, 523, 580, 589, 596
NheI	GCTAGC	1 cut(s)	239
NlaIII	CATG	4 cut(s)	360, 533, 572, 631
NlaIV	GGNNCC	3 cut(s)	6, 173, 561
NmeAIII	GCCGAG	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	484
NsbI	TGCGCA	1 cut(s)	186
NspV	TTCGAA	1 cut(s)	545
PagI	TCATGA	2 cut(s)	529, 568
PctI	GAATGC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	452
PshBI	ATTAAT	2 cut(s)	318, 576
PspN4I	GGNNCC	3 cut(s)	6, 173, 561
PspPI	GGNCC	3 cut(s)	4, 171, 559
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	4 cut(s)	154, 212, 350, 619
RsaNI	GTAC	4 cut(s)	153, 211, 349, 618
SaqAI	TTAA	3 cut(s)	80, 318, 576
Sau3AI	GATC	9 cut(s)	46, 64, 132, 178, 364, 523, 580, 589, 596
Sau96I	GGNCC	3 cut(s)	4, 171, 559
ScaI	AGTACT	2 cut(s)	154, 619
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	520
SetI	ASST	9 cut(s)	60, 102, 148, 429, 436, 473, 514, 540, 644
SfaNI	GCATC	2 cut(s)	226, 409
SfcI	CTRYAG	3 cut(s)	156, 472, 610
SfuI	TTCGAA	1 cut(s)	545
SinI	GGWCC	2 cut(s)	4, 559
Sse9I	AATT	5 cut(s)	76, 322, 392, 541, 632
SsiI	CCGC	1 cut(s)	477
SspMI	CTAG	2 cut(s)	240, 428
StyD4I	CCNGG	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	3 cut(s)	157, 380, 614
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	5 cut(s)	67, 286, 367, 461, 545
TasI	AATT	5 cut(s)	76, 322, 392, 541, 632
TatI	WGTACW	2 cut(s)	152, 617
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	3 cut(s)	80, 318, 576
Tru9I	TTAA	3 cut(s)	80, 318, 576
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	484
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	3 cut(s)	240, 479, 557
TspRI	CASTG	1 cut(s)	211
VneI	GTGCAC	1 cut(s)	516
VpaK11BI	GGWCC	2 cut(s)	4, 559
VspI	ATTAAT	2 cut(s)	318, 576
XapI	RAATTY	2 cut(s)	76, 541
XspI	CTAG	2 cut(s)	240, 428
ZrmI	AGTACT	2 cut(s)	154, 619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.