Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Reverse (-)

33732971 .. 33733944

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002414

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGAAAAGCTGTAGCGGTTTTGTGACCCCAAAAAACAAAAGCAGCAAAGCTGGTGCACTTGATCATCATGACAAGGTGAATTCGAACTTGAACTCGGTCCCTTTTCGTGAGATTAATGATCTTGATGACCCAAGATCATCCAGAAACTACAGTGGTATTCCAACCATGCAATTCATGAGGTGGGACACGAAATGGAAAAGCATGTACCGTTCAGCTGTTCCAAGATTCCACTTGGGATCCAGTTTAAATTCTACAAGCAAACCAGACATGCTTTTGGAACACTTGAAACATTTTCGTGAGGACGTGATTGACCTGGAGACCAAAAAGCTCAATTTTGTCCTTGTCTCCGAGCTACCTAATGAGGATACTTCTGGGGTTGGGGTTCTTGTTTCCAGCGATGTAATGCGGATACTACTAGAGGCGTGCATTCTCACTCAATGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

149

Amino Acids

16.72

Weight (kDa)

7.76

Isoelectric Point (pI)

33.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	15, 406
AclWI	GGATC	2 cut(s)	231, 244
AcsI	RAATTY	2 cut(s)	79, 247
AfaI	GTAC	1 cut(s)	206
AgsI	TTSAA	2 cut(s)	91, 286
AjiI	CACGTC	1 cut(s)	304
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	5 cut(s)	9, 50, 215, 328, 352
AluI	AGCT	5 cut(s)	9, 50, 215, 328, 352
Alw21I	GWGCWC	1 cut(s)	58
Alw26I	GTCTC	2 cut(s)	311, 349
Alw44I	GTGCAC	1 cut(s)	54
AlwI	GGATC	2 cut(s)	231, 244
ApaLI	GTGCAC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	42
ApoI	RAATTY	2 cut(s)	79, 247
AseI	ATTAAT	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	88
AsuII	TTCGAA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	58
BamHI	GGATCC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	54
BciT130I	CCWGG	1 cut(s)	314
BciVI	GTATCC	2 cut(s)	358, 402
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	2 cut(s)	311, 349
BfaI	CTAG	1 cut(s)	416
BfmI	CTRYAG	2 cut(s)	10, 148
BfuI	GTATCC	2 cut(s)	358, 402
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	314
Bme18I	GGWCC	1 cut(s)	97
BmgBI	CACGTC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	2 cut(s)	99, 238
BmrFI	CCNGG	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	335
Bpu14I	TTCGAA	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	314
BseGI	GGATG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	240
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	58
BslFI	GGGAC	2 cut(s)	83, 197
BsmAI	GTCTC	2 cut(s)	311, 349
BsmFI	GGGAC	2 cut(s)	83, 197
BsmI	GAATGC	1 cut(s)	426
Bso31I	GGTCTC	1 cut(s)	311
Bsp119I	TTCGAA	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	4 cut(s)	61, 118, 134, 236
BspACI	CCGC	2 cut(s)	15, 406
BspHI	TCATGA	3 cut(s)	67, 174, 443
BspLI	GGNNCC	2 cut(s)	99, 238
BspPI	GGATC	2 cut(s)	231, 244
BspT104I	TTCGAA	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	240
BssMI	GATC	4 cut(s)	61, 118, 134, 236
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	2 cut(s)	152, 209
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	424
BstF5I	GGATG	1 cut(s)	137
BstKTI	GATC	4 cut(s)	64, 121, 137, 239
BstMAI	GTCTC	2 cut(s)	311, 349
BstMBI	GATC	4 cut(s)	61, 118, 134, 236
BstNI	CCWGG	1 cut(s)	314
BstNSI	RCATGY	2 cut(s)	205, 271
BstSCI	CCNGG	1 cut(s)	312
BstSFI	CTRYAG	2 cut(s)	10, 148
BstSLI	GKGCMC	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	236
BsuI	GTATCC	2 cut(s)	358, 402
BtgZI	GCGATG	1 cut(s)	411
BtrI	CACGTC	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	424
CciI	TCATGA	3 cut(s)	67, 174, 443
Cfr13I	GGNCC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	6 cut(s)	68, 166, 175, 202, 268, 444
CviJI	RGCY	5 cut(s)	9, 50, 215, 328, 352
CviKI_1	RGCY	5 cut(s)	9, 50, 215, 328, 352
CviQI	GTAC	1 cut(s)	205
DpnI	GATC	4 cut(s)	63, 120, 136, 238
DpnII	GATC	4 cut(s)	61, 118, 134, 236
DraI	TTTAAA	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	97
EcoRI	GAATTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	312
FaeI	CATG	6 cut(s)	71, 169, 178, 205, 271, 447
FaiI	YATR	6 cut(s)	69, 167, 176, 203, 269, 445
FaqI	GGGAC	2 cut(s)	83, 197
FatI	CATG	6 cut(s)	67, 165, 174, 201, 267, 443
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	43
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	43
FspBI	CTAG	1 cut(s)	416
GluI	GCNGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	335
Hin1II	CATG	6 cut(s)	71, 169, 178, 205, 271, 447
HinfI	GANTC	1 cut(s)	225
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	7 cut(s)	68, 107, 122, 141, 175, 296, 444
Hpy8I	GTNNAC	1 cut(s)	56
HpyCH4III	ACNGT	2 cut(s)	152, 209
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	3 cut(s)	56, 169, 426
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	6 cut(s)	71, 169, 178, 205, 271, 447
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	4 cut(s)	61, 118, 134, 236
LpnPI	CCDG	8 cut(s)	36, 154, 253, 276, 299, 326, 357, 406
Lsp1109I	GCAGC	1 cut(s)	54
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	4 cut(s)	63, 120, 136, 238
MboI	GATC	4 cut(s)	61, 118, 134, 236
MflI	RGATCY	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	4 cut(s)	79, 170, 247, 331
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	4 cut(s)	171, 292, 355, 412
MseI	TTAA	2 cut(s)	114, 245
MslI	CAYNNNNRTG	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	314
Mva1269I	GAATGC	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	314
NdeII	GATC	4 cut(s)	61, 118, 134, 236
NlaIII	CATG	6 cut(s)	71, 169, 178, 205, 271, 447
NlaIV	GGNNCC	2 cut(s)	99, 238
NmuCI	GTSAC	1 cut(s)	22
NspI	RCATGY	2 cut(s)	205, 271
NspV	TTCGAA	1 cut(s)	83
PagI	TCATGA	3 cut(s)	67, 174, 443
PctI	GAATGC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	44
PshBI	ATTAAT	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	99, 238
PspPI	GGNCC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	236
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	2 cut(s)	114, 245
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	4 cut(s)	61, 118, 134, 236
Sau96I	GGNCC	1 cut(s)	97
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	58
SfcI	CTRYAG	2 cut(s)	10, 148
SfuI	TTCGAA	1 cut(s)	83
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	294
Sse9I	AATT	4 cut(s)	79, 170, 247, 331
SsiI	CCGC	2 cut(s)	15, 406
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	1 cut(s)	312
TaaI	ACNGT	2 cut(s)	152, 209
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	1 cut(s)	83
TaqII	GACCGA	1 cut(s)	85
TasI	AATT	4 cut(s)	79, 170, 247, 331
TfiI	GAWTC	1 cut(s)	225
Tru1I	TTAA	2 cut(s)	114, 245
Tru9I	TTAA	2 cut(s)	114, 245
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	1 cut(s)	42
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	2 cut(s)	17, 163
TspRI	CASTG	1 cut(s)	157
VneI	GTGCAC	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	97
VspI	ATTAAT	1 cut(s)	114
XapI	RAATTY	2 cut(s)	79, 247
XceI	RCATGY	2 cut(s)	205, 271
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.