Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Reverse (-)

7138782 .. 7141626

Gene Structure 2845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07700.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGATCGTCAAAGAAAAATACAGCAGCTGTCGTCCAGTAAGAGTGATCGTAAGAAGATTAAGGATCGAAAGAAGAATCTAATCAAGAAAGCCGAGGAGCTTTCAATACTCTGTGGCGTAGATGTATGTTTGATCCTCGACCAATGTCAAAGCACTGTAGTAGAGACTTGGCCTCAAGATCCTGAAGAAGTAAACCGCATTATCACTACGTACAAGGCAAACCCAGCAATCAGAGATGCTAGTATTCCTTCATCAGAGCCAAAGGGTTTGGAAGAAACTAAGGCTGGAAAGTCCCATGGTGGTTGTCAGAATGTTGTTGATCCTGACAAGGAGAGGGGTACAAAGGCTGGAAAGTCCCATGGTGGTTATAAGAATGTTGTTGATTCTGACAAGGAGAGGGAGAAGTTGTACCCGACATGGGATGATCGACTAGATTACTATTCTGAGGAAGAATTGATTAGACTGTTGGCTTCCTTGGATGCAAGGCTACAAGCTTCAGCAAATAGGATTGATAATGAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

175

Amino Acids

19.7

Weight (kDa)

6.75

Isoelectric Point (pI)

30.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	23 - 46	1.6e-09	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
AciI	CCGC	1 cut(s)	196
AclWI	GGATC	5 cut(s)	12, 72, 127, 173, 314
AcuI	CTGAAG	2 cut(s)	204, 480
AfaI	GTAC	3 cut(s)	212, 340, 410
AfiI	CCNNNNNNNGG	1 cut(s)	418
AgsI	TTSAA	1 cut(s)	105
AluBI	AGCT	3 cut(s)	28, 100, 494
AluI	AGCT	3 cut(s)	28, 100, 494
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	5 cut(s)	12, 72, 127, 173, 314
AlwNI	CAGNNNCTG	1 cut(s)	28
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	2 cut(s)	240, 431
BfmI	CTRYAG	1 cut(s)	156
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
BmsI	GCATC	2 cut(s)	226, 469
BoxI	GACNNNNGTC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	159
BsaAI	YACGTR	1 cut(s)	210
BsaJI	CCNNGG	4 cut(s)	93, 295, 358, 474
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse1I	ACTGG	1 cut(s)	36
BseDI	CCNNGG	4 cut(s)	93, 295, 358, 474
BseGI	GGATG	2 cut(s)	427, 484
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	37
BseYI	CCCAGC	1 cut(s)	223
BshFI	GGCC	1 cut(s)	172
BslFI	GGGAC	2 cut(s)	277, 340
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	2 cut(s)	277, 340
BsnI	GGCC	1 cut(s)	172
Bsp143I	GATC	7 cut(s)	4, 46, 64, 132, 178, 319, 424
Bsp19I	CCATGG	2 cut(s)	295, 358
BspACI	CCGC	1 cut(s)	196
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	436
BspPI	GGATC	5 cut(s)	12, 72, 127, 173, 314
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	4 cut(s)	93, 295, 358, 474
BssMI	GATC	7 cut(s)	4, 46, 64, 132, 178, 319, 424
BssT1I	CCWWGG	3 cut(s)	295, 358, 474
Bst4CI	ACNGT	2 cut(s)	157, 465
BstBAI	YACGTR	1 cut(s)	210
BstDEI	CTNAG	2 cut(s)	279, 444
BstDSI	CCRYGG	2 cut(s)	295, 358
BstF5I	GGATG	2 cut(s)	427, 484
BstKTI	GATC	7 cut(s)	7, 49, 67, 135, 181, 322, 427
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	7 cut(s)	4, 46, 64, 132, 178, 319, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstPAI	GACNNNNGTC	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	156
BstSNI	TACGTA	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	172
BtgI	CCRYGG	2 cut(s)	295, 358
BtsCI	GGATG	2 cut(s)	427, 484
BtsIMutI	CAGTG	1 cut(s)	153
CaiI	CAGNNNCTG	1 cut(s)	28
Csp6I	GTAC	3 cut(s)	211, 339, 409
CviAII	CATG	3 cut(s)	296, 359, 417
CviQI	GTAC	3 cut(s)	211, 339, 409
DdeI	CTNAG	2 cut(s)	279, 444
DpnI	GATC	7 cut(s)	6, 48, 66, 134, 180, 321, 426
DpnII	GATC	7 cut(s)	4, 46, 64, 132, 178, 319, 424
Eco105I	TACGTA	1 cut(s)	210
Eco130I	CCWWGG	3 cut(s)	295, 358, 474
Eco57I	CTGAAG	2 cut(s)	204, 480
EcoT14I	CCWWGG	3 cut(s)	295, 358, 474
ErhI	CCWWGG	3 cut(s)	295, 358, 474
FaeI	CATG	3 cut(s)	299, 362, 420
FaiI	YATR	5 cut(s)	127, 297, 360, 369, 418
FaqI	GGGAC	2 cut(s)	277, 340
FatI	CATG	3 cut(s)	295, 358, 416
Fnu4HI	GCNGC	1 cut(s)	26
FokI	GGATG	2 cut(s)	434, 491
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	2 cut(s)	240, 431
GluI	GCNGC	1 cut(s)	26
GsaI	CCCAGC	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	172
Hin1II	CATG	3 cut(s)	299, 362, 420
HindIII	AAGCTT	1 cut(s)	492
HinfI	GANTC	2 cut(s)	76, 383
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	5 cut(s)	233, 256, 309, 388, 445
Hpy188III	TCNNGA	4 cut(s)	85, 176, 182, 323
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	2 cut(s)	157, 465
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	1 cut(s)	482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	2 cut(s)	279, 444
HpySE526I	ACGT	1 cut(s)	209
Hsp92II	CATG	3 cut(s)	299, 362, 420
Kzo9I	GATC	7 cut(s)	4, 46, 64, 132, 178, 319, 424
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	6 cut(s)	49, 195, 237, 270, 333, 336
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	2 cut(s)	226, 469
MaeI	CTAG	2 cut(s)	240, 431
MaeII	ACGT	1 cut(s)	209
MalI	GATC	7 cut(s)	6, 48, 66, 134, 180, 321, 426
MboI	GATC	7 cut(s)	4, 46, 64, 132, 178, 319, 424
MboII	GAAGA	5 cut(s)	67, 85, 197, 284, 461
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	1 cut(s)	452
MnlI	CCTC	6 cut(s)	88, 146, 183, 327, 390, 439
MseI	TTAA	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	224
NcoI	CCATGG	2 cut(s)	295, 358
NdeII	GATC	7 cut(s)	4, 46, 64, 132, 178, 319, 424
NlaIII	CATG	3 cut(s)	299, 362, 420
NmeAIII	GCCGAG	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	76, 383
PkrI	GCNGC	1 cut(s)	27
Ppu21I	YACGTR	1 cut(s)	210
PshAI	GACNNNNGTC	1 cut(s)	144
PsiI	TTATAA	1 cut(s)	369
PspFI	CCCAGC	1 cut(s)	223
PstNI	CAGNNNCTG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	28
RsaI	GTAC	3 cut(s)	212, 340, 410
RsaNI	GTAC	3 cut(s)	211, 339, 409
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	7 cut(s)	4, 46, 64, 132, 178, 319, 424
SetI	ASST	4 cut(s)	30, 102, 212, 496
SfaNI	GCATC	2 cut(s)	226, 469
SfcI	CTRYAG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
SnaBI	TACGTA	1 cut(s)	210
Sse9I	AATT	1 cut(s)	452
SsiI	CCGC	1 cut(s)	196
SspMI	CTAG	2 cut(s)	240, 431
StyI	CCWWGG	3 cut(s)	295, 358, 474
TaaI	ACNGT	2 cut(s)	157, 465
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	3 cut(s)	67, 138, 427
TasI	AATT	1 cut(s)	452
TfiI	GAWTC	2 cut(s)	76, 383
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	240
TspRI	CASTG	1 cut(s)	160
XspI	CTAG	2 cut(s)	240, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.