Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Forward (+)

5875905 .. 5878265

Gene Structure 2361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G031800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGTGGCTCCTCGAAGAACATGCTTAGAACTCATACCTAATGAGGGCACTCGGAAGATGACATTTCGGAAGCGAAAGAAGAGTATATATAAAAAGGCCGACGAGCTTTCGAAGCTTTGTGGTATTGATGTTTGCTTGATCGTCTATGCAGCCGATCAAAAGAAGGGGAGGGCAGTTCAACCGGAGACGTGGCCGCGGGATCCAAATCAATTCAAACGCATTCTCAACAAGTACAAGGATTCTAAGGATACGTCCACACCCAGATTGAAAAGAAACTTTATTATGTCTGATTTTTATGAGGACAAGAAAGATCACGTGGATGAGGATGACGAAAAGTTTCAAAATTTAGGGAAGAAGATTTTTGAGGGGGAATACCCGACAAAGTTTCAAAATTTAGGGAAGAAGATTTCTGAGGAGGAGTACCCGAGATGGGACGATCGAATAGATGATTTTTCGCAGGACGAATTGACTGAGCTCATTGCTTCACTCGAATCCAAGATACAAGTTGCAACCAAGAGGATTGATTCTATGGAAAGATATATGGGGTTTGCTAAGAAACAAAATCAAAGTTTGGTCCGGGAAGAGACTAATCATGATGAGCAGCCCTATCAAGTCCCTGCTTTGATGTCTCCTCCATCACTTGTGCATTATCCAATGTTGCCAAGTGCATGGGTTTCAAGCTCAGAATCGGCGAAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

234

Amino Acids

27.27

Weight (kDa)

8.55

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	196
AciI	CCGC	2 cut(s)	194, 196
AclWI	GGATC	2 cut(s)	194, 207
AcoI	YGGCCR	1 cut(s)	191
AcsI	RAATTY	2 cut(s)	343, 391
AcvI	CACGTG	1 cut(s)	316
AfaI	GTAC	2 cut(s)	233, 422
AfiI	CCNNNNNNNGG	2 cut(s)	44, 430
AgsI	TTSAA	6 cut(s)	179, 214, 268, 341, 389, 678
AjiI	CACGTC	1 cut(s)	189
AluBI	AGCT	5 cut(s)	106, 115, 475, 681, 699
AluI	AGCT	5 cut(s)	106, 115, 475, 681, 699
Alw21I	GWGCWC	1 cut(s)	477
Alw26I	GTCTC	3 cut(s)	179, 578, 633
AlwI	GGATC	2 cut(s)	194, 207
Ama87I	CYCGRG	1 cut(s)	424
AoxI	GGCC	2 cut(s)	96, 191
ApeKI	GCWGC	2 cut(s)	149, 601
ApoI	RAATTY	2 cut(s)	343, 391
Asp700I	GAANNNNTTC	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	574
AsuC2I	CCSGG	1 cut(s)	578
AsuII	TTCGAA	1 cut(s)	110
AvaI	CYCGRG	1 cut(s)	424
AvaII	GGWCC	1 cut(s)	574
BaeGI	GKGCMC	1 cut(s)	50
BamHI	GGATCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	477
BbrPI	CACGTG	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	477
BbvI	GCAGC	2 cut(s)	161, 613
BccI	CCATC	2 cut(s)	423, 643
BcgI	CGANNNNNNTGC	1 cut(s)	37
BciVI	GTATCC	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	578
BcoDI	GTCTC	3 cut(s)	179, 578, 633
BfuI	GTATCC	1 cut(s)	241
BisI	GCNGC	3 cut(s)	150, 194, 602
BlsI	GCNGC	3 cut(s)	151, 195, 603
Bme1390I	CCNGG	1 cut(s)	578
Bme18I	GGWCC	1 cut(s)	574
BmeT110I	CYCGRG	1 cut(s)	424
BmgBI	CACGTC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	574
BmiI	GGNNCC	2 cut(s)	9, 201
BmrFI	CCNGG	1 cut(s)	578
Bpu14I	TTCGAA	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	578
BsaAI	YACGTR	1 cut(s)	316
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	194
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 430
Bse3DI	GCAATG	1 cut(s)	477
Bse8I	GATNNNNATC	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	2 cut(s)	325, 331
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	44, 430
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	3 cut(s)	402, 462, 696
BseRI	GAGGAG	3 cut(s)	428, 431, 621
BseSI	GKGCMC	1 cut(s)	50
BseXI	GCAGC	2 cut(s)	161, 613
Bsh1236I	CGCG	1 cut(s)	196
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	2 cut(s)	98, 193
BsiEI	CGRYCG	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	477
BsiHKCI	CYCGRG	1 cut(s)	424
BsiSI	CCGG	2 cut(s)	182, 577
BslFI	GGGAC	2 cut(s)	446, 599
BslI	CCNNNNNNNGG	2 cut(s)	44, 430
BsmAI	GTCTC	3 cut(s)	179, 578, 633
BsmBI	CGTCTC	1 cut(s)	179
BsmFI	GGGAC	2 cut(s)	446, 599
BsmI	GAATGC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	98, 193
BsoBI	CYCGRG	1 cut(s)	424
Bsp119I	TTCGAA	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	50, 477
Bsp143I	GATC	5 cut(s)	138, 154, 199, 310, 436
BspACI	CCGC	2 cut(s)	194, 196
BspANI	GGCC	2 cut(s)	98, 193
BspCNI	CTCAG	3 cut(s)	403, 463, 695
BspFNI	CGCG	1 cut(s)	196
BspHI	TCATGA	1 cut(s)	592
BspLI	GGNNCC	2 cut(s)	9, 201
BspPI	GGATC	2 cut(s)	194, 207
BspQI	GCTCTTC	1 cut(s)	689
BspT104I	TTCGAA	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	477
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	5 cut(s)	138, 154, 199, 310, 436
Bst6I	CTCTTC	3 cut(s)	74, 576, 689
BstBAI	YACGTR	1 cut(s)	316
BstBI	TTCGAA	1 cut(s)	110
BstDEI	CTNAG	6 cut(s)	25, 243, 411, 471, 552, 682
BstDSI	CCRYGG	1 cut(s)	194
BstF5I	GGATG	2 cut(s)	325, 331
BstFNI	CGCG	1 cut(s)	196
BstKTI	GATC	5 cut(s)	141, 157, 202, 313, 439
BstMAI	GTCTC	3 cut(s)	179, 578, 633
BstMBI	GATC	5 cut(s)	138, 154, 199, 310, 436
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstNSI	RCATGY	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	576
BstSLI	GKGCMC	1 cut(s)	50
BstUI	CGCG	1 cut(s)	196
BstV1I	GCAGC	2 cut(s)	161, 613
BstX2I	RGATCY	1 cut(s)	199
BstXI	CCANNNNNNTGG	1 cut(s)	669
BstYI	RGATCY	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	241
BsuRI	GGCC	2 cut(s)	98, 193
BtgI	CCRYGG	1 cut(s)	194
BtrI	CACGTC	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	325, 331
CciI	TCATGA	1 cut(s)	592
Cfr13I	GGNCC	1 cut(s)	574
Cfr42I	CCGCGG	1 cut(s)	197
Csp6I	GTAC	2 cut(s)	232, 421
CviAII	CATG	3 cut(s)	21, 593, 669
CviQI	GTAC	2 cut(s)	232, 421
DdeI	CTNAG	6 cut(s)	25, 243, 411, 471, 552, 682
DpnI	GATC	5 cut(s)	140, 156, 201, 312, 438
DpnII	GATC	5 cut(s)	138, 154, 199, 310, 436
EaeI	YGGCCR	1 cut(s)	191
Eam1104I	CTCTTC	3 cut(s)	74, 576, 689
EarI	CTCTTC	3 cut(s)	74, 576, 689
Ecl136II	GAGCTC	1 cut(s)	475
Eco24I	GRGCYC	1 cut(s)	477
Eco47I	GGWCC	1 cut(s)	574
Eco53kI	GAGCTC	1 cut(s)	475
Eco72I	CACGTG	1 cut(s)	316
Eco88I	CYCGRG	1 cut(s)	424
EcoICRI	GAGCTC	1 cut(s)	475
EcoT38I	GRGCYC	1 cut(s)	477
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	3 cut(s)	24, 596, 672
FaqI	GGGAC	2 cut(s)	446, 599
FatI	CATG	3 cut(s)	20, 592, 668
FauI	CCCGC	1 cut(s)	189
Fnu4HI	GCNGC	3 cut(s)	150, 194, 602
FokI	GGATG	2 cut(s)	332, 338
FriOI	GRGCYC	1 cut(s)	477
Fsp4HI	GCNGC	3 cut(s)	150, 194, 602
GluI	GCNGC	3 cut(s)	150, 194, 602
HaeIII	GGCC	2 cut(s)	98, 193
HapII	CCGG	2 cut(s)	182, 577
Hin1II	CATG	3 cut(s)	24, 596, 672
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	4 cut(s)	239, 491, 524, 686
HpaII	CCGG	2 cut(s)	182, 577
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	5 cut(s)	54, 69, 289, 412, 685
Hpy188III	TCNNGA	1 cut(s)	593
Hpy8I	GTNNAC	1 cut(s)	255
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	157
HpyCH4IV	ACGT	3 cut(s)	188, 251, 315
HpyCH4V	TGCA	4 cut(s)	149, 509, 646, 668
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
HpyF3I	CTNAG	6 cut(s)	25, 243, 411, 471, 552, 682
HpySE526I	ACGT	3 cut(s)	188, 251, 315
Hsp92II	CATG	3 cut(s)	24, 596, 672
KspI	CCGCGG	1 cut(s)	197
Kzo9I	GATC	5 cut(s)	138, 154, 199, 310, 436
LguI	GCTCTTC	1 cut(s)	689
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	5 cut(s)	195, 274, 443, 590, 630
Lsp1109I	GCAGC	2 cut(s)	161, 613
MaeII	ACGT	3 cut(s)	188, 251, 315
MalI	GATC	5 cut(s)	140, 156, 201, 312, 438
MboI	GATC	5 cut(s)	138, 154, 199, 310, 436
MboII	GAAGA	8 cut(s)	27, 67, 91, 364, 367, 412, 415, 593
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	2 cut(s)	50, 477
MluCI	AATT	4 cut(s)	209, 343, 391, 464
MroXI	GAANNNNTTC	1 cut(s)	336
MslI	CAYNNNNRTG	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	196
MspI	CCGG	2 cut(s)	182, 577
MspR9I	CCNGG	1 cut(s)	578
Mva1269I	GAATGC	1 cut(s)	219
MvnI	CGCG	1 cut(s)	196
MwoI	GCNNNNNNNGC	1 cut(s)	112
NciI	CCSGG	1 cut(s)	578
NdeII	GATC	5 cut(s)	138, 154, 199, 310, 436
NlaIII	CATG	3 cut(s)	24, 596, 672
NlaIV	GGNNCC	2 cut(s)	9, 201
NspI	RCATGY	1 cut(s)	24
NspV	TTCGAA	1 cut(s)	110
PagI	TCATGA	1 cut(s)	592
PciSI	GCTCTTC	1 cut(s)	689
PctI	GAATGC	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	4 cut(s)	239, 491, 524, 686
PfoI	TCCNGGA	1 cut(s)	576
PkrI	GCNGC	3 cut(s)	151, 195, 603
Ple19I	CGATCG	1 cut(s)	439
PmaCI	CACGTG	1 cut(s)	316
PmlI	CACGTG	1 cut(s)	316
Ppu21I	YACGTR	1 cut(s)	316
Psp124BI	GAGCTC	1 cut(s)	477
PspCI	CACGTG	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	9, 201
PspPI	GGNCC	1 cut(s)	574
PsuI	RGATCY	1 cut(s)	199
PvuI	CGATCG	1 cut(s)	439
RsaI	GTAC	2 cut(s)	233, 422
RsaNI	GTAC	2 cut(s)	232, 421
RseI	CAYNNNNRTG	1 cut(s)	318
SacI	GAGCTC	1 cut(s)	477
SacII	CCGCGG	1 cut(s)	197
SapI	GCTCTTC	1 cut(s)	689
SatI	GCNGC	3 cut(s)	150, 194, 602
Sau3AI	GATC	5 cut(s)	138, 154, 199, 310, 436
Sau96I	GGNCC	1 cut(s)	574
ScrFI	CCNGG	1 cut(s)	578
SduI	GDGCHC	2 cut(s)	50, 477
SetI	ASST	9 cut(s)	40, 108, 117, 191, 254, 318, 477, 683, 701
Sfr303I	CCGCGG	1 cut(s)	197
SfuI	TTCGAA	1 cut(s)	110
SgrBI	CCGCGG	1 cut(s)	197
SinI	GGWCC	1 cut(s)	574
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	4 cut(s)	209, 343, 391, 464
SsiI	CCGC	2 cut(s)	194, 196
SstI	GAGCTC	1 cut(s)	477
StyD4I	CCNGG	1 cut(s)	576
TaiI	ACGT	3 cut(s)	191, 254, 318
TaqI	TCGA	4 cut(s)	13, 110, 439, 489
TasI	AATT	4 cut(s)	209, 343, 391, 464
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	4 cut(s)	239, 491, 524, 686
TseI	GCWGC	2 cut(s)	149, 601
VpaK11BI	GGWCC	1 cut(s)	574
XapI	RAATTY	2 cut(s)	343, 391
XceI	RCATGY	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.