Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Forward (+)

4774218 .. 4774679

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g04141.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGACAAGGTTCCCAGTTTTAGGCGGAAGCTTCTTCGGGATAGGGAGAGAAACTTATGTAAGAAGGCGAACGAGCTTTCGATACTTTGTGGTACTGATGTATGCATGATCACCTTCAAGCCTCACAATACCAAACCAGAGACTTGGCCCCAAGAACGTACAGAACTACAGAAGTCCATCGCATTATCGAAAAGTACAAGACTTGACCCCAAGAAGATGAAACTGGACTTGAGTTTTTCTGATTCTTATGATTCCGAGACTAGAGGTAAGAAGTTGCATGCTGACTACAATGCTCTGAATCCTGAAGAGGCCATGGCTATGGAGATGCAGTACCAAGAAGGGACTGCAAAGCATCCCCAGAACGAATTGATTGGAGATGACGAGGCAAAGCTTGCTTCACTAGAAGTTAAGCTGCAAGCTATAACCAAGAGAATTGCTTCAATGGAGGCAAATTATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

154

Amino Acids

17.61

Weight (kDa)

8.37

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	15 - 48	1.2e-09	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	4 cut(s)	94, 160, 196, 332
AfiI	CCNNNNNNNGG	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	118, 441
AluBI	AGCT	5 cut(s)	31, 76, 391, 412, 419
AluI	AGCT	5 cut(s)	31, 76, 391, 412, 419
Alw26I	GTCTC	2 cut(s)	134, 251
AoxI	GGCC	2 cut(s)	146, 309
ApeKI	GCWGC	1 cut(s)	412
Asp700I	GAANNNNTTC	1 cut(s)	436
AspS9I	GGNCC	1 cut(s)	147
AsuHPI	GGTGA	1 cut(s)	103
BaeI	ACNNNNGTAYC	2 cut(s)	84, 117
BbvI	GCAGC	1 cut(s)	399
BccI	CCATC	1 cut(s)	185
BclI	TGATCA	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	134, 251
BfaI	CTAG	2 cut(s)	261, 401
BfmI	CTRYAG	1 cut(s)	167
BisI	GCNGC	1 cut(s)	413
BlsI	GCNGC	1 cut(s)	414
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	2 cut(s)	12, 149
BmrI	ACTGGG	1 cut(s)	9
BmsI	GCATC	2 cut(s)	315, 361
BmuI	ACTGGG	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	312
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse1I	ACTGG	2 cut(s)	15, 228
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseNI	ACTGG	2 cut(s)	15, 228
BseXI	GCAGC	1 cut(s)	399
BshFI	GGCC	2 cut(s)	148, 311
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmAI	GTCTC	2 cut(s)	134, 251
BsmFI	GGGAC	1 cut(s)	355
BsnI	GGCC	2 cut(s)	148, 311
Bsp143I	GATC	1 cut(s)	108
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	2 cut(s)	148, 311
BspLI	GGNNCC	2 cut(s)	12, 149
BsrI	ACTGG	2 cut(s)	15, 228
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	312
Bst6I	CTCTTC	1 cut(s)	300
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstC8I	GCNNGC	3 cut(s)	279, 393, 417
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	352
BstKTI	GATC	1 cut(s)	111
BstMAI	GTCTC	2 cut(s)	134, 251
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNSI	RCATGY	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	399
BstXI	CCANNNNNNTGG	2 cut(s)	144, 319
BsuRI	GGCC	2 cut(s)	148, 311
BtgI	CCRYGG	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	352
Cac8I	GCNNGC	3 cut(s)	279, 393, 417
Cfr13I	GGNCC	1 cut(s)	147
Csp6I	GTAC	4 cut(s)	93, 159, 195, 331
CviAII	CATG	3 cut(s)	106, 278, 313
CviJI	RGCY	9 cut(s)	31, 76, 121, 148, 311, 317, 391, 412, 419
CviKI_1	RGCY	9 cut(s)	31, 76, 121, 148, 311, 317, 391, 412, 419
CviQI	GTAC	4 cut(s)	93, 159, 195, 331
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
EciI	GGCGGA	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	312
Eco57I	CTGAAG	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	312
EcoT22I	ATGCAT	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	3 cut(s)	109, 281, 316
FaiI	YATR	8 cut(s)	58, 103, 107, 249, 279, 314, 320, 422
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	3 cut(s)	105, 277, 312
FbaI	TGATCA	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	413
FokI	GGATG	1 cut(s)	339
Fsp4HI	GCNGC	1 cut(s)	413
FspBI	CTAG	2 cut(s)	261, 401
GluI	GCNGC	1 cut(s)	413
HaeIII	GGCC	2 cut(s)	148, 311
Hin1II	CATG	3 cut(s)	109, 281, 316
HindIII	AAGCTT	2 cut(s)	29, 389
HinfI	GANTC	3 cut(s)	242, 251, 298
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	3 cut(s)	241, 256, 297
Hpy188III	TCNNGA	2 cut(s)	38, 302
HpyAV	CCTTC	3 cut(s)	58, 124, 332
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	5 cut(s)	105, 277, 328, 347, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	3 cut(s)	109, 281, 316
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	108
LpnPI	CCDG	5 cut(s)	28, 150, 209, 315, 371
Lsp1109I	GCAGC	1 cut(s)	399
LweI	GCATC	2 cut(s)	315, 361
MaeI	CTAG	2 cut(s)	261, 401
MaeII	ACGT	1 cut(s)	157
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	3 cut(s)	26, 226, 317
MluCI	AATT	3 cut(s)	365, 432, 451
MnlI	CCTC	5 cut(s)	132, 257, 301, 376, 439
Mph1103I	ATGCAT	1 cut(s)	107
MroXI	GAANNNNTTC	1 cut(s)	436
MseI	TTAA	2 cut(s)	408, 460
MslI	CAYNNNNRTG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	392
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	3 cut(s)	109, 281, 316
NlaIV	GGNNCC	2 cut(s)	12, 149
NsiI	ATGCAT	1 cut(s)	107
NspI	RCATGY	1 cut(s)	281
PaeI	GCATGC	1 cut(s)	281
PdmI	GAANNNNTTC	1 cut(s)	436
PfeI	GAWTC	3 cut(s)	242, 251, 298
PkrI	GCNGC	1 cut(s)	414
PspN4I	GGNNCC	2 cut(s)	12, 149
PspPI	GGNCC	1 cut(s)	147
RsaI	GTAC	4 cut(s)	94, 160, 196, 332
RsaNI	GTAC	4 cut(s)	93, 159, 195, 331
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	2 cut(s)	408, 460
SatI	GCNGC	1 cut(s)	413
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	1 cut(s)	147
SetI	ASST	9 cut(s)	12, 33, 78, 116, 160, 268, 393, 414, 421
SfaNI	GCATC	2 cut(s)	315, 361
SfcI	CTRYAG	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
SphI	GCATGC	1 cut(s)	281
Sse9I	AATT	3 cut(s)	365, 432, 451
SsiI	CCGC	1 cut(s)	25
SspMI	CTAG	2 cut(s)	261, 401
StyI	CCWWGG	1 cut(s)	312
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	2 cut(s)	80, 188
TasI	AATT	3 cut(s)	365, 432, 451
TatI	WGTACW	1 cut(s)	194
TfiI	GAWTC	3 cut(s)	242, 251, 298
Tru1I	TTAA	2 cut(s)	408, 460
Tru9I	TTAA	2 cut(s)	408, 460
TseI	GCWGC	1 cut(s)	412
TspDTI	ATGAA	1 cut(s)	233
XceI	RCATGY	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	436
XspI	CTAG	2 cut(s)	261, 401
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.