Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002636.1

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Reverse (-)

116885 .. 119109

Gene Structure 2225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002636.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgtactcaaactggagtgccatctccatgtggcacttcatcagggctgatctgcacaggaatgagcttgctgctatgctgcaggggcaacaggcgtgcgacgatgctgcaggggcagtaggaggcacacgggtgctcaaggactgtatgagcagctcacgtaagagtgatcgtaaaaaggtccgggatcgaaagaagaatttaatcaagaaagccgaggagctttcgaaactttgtggtgttgatgtatgcttgatcctctaccaacgtcatagcactatagtagagacttggccccaagatcctgcggaagtcaaacgcattatcactgggtacaaggcaaacccgggaatcagagatgcaagcattccttcatcggagacaaagggtttggaagaaaccaaggctggaaagtcccatagtggtcgtgagactgtagttaattccgacgaggagagggagatgttgtacccgacatgggatgatggattaggttactgttctgaggacgaattgattagacttgtggcttccttggatgcaaagctagaagcttcagcaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

188

Amino Acids

20.96

Weight (kDa)

6.44

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	308
AclWI	GGATC	3 cut(s)	195, 250, 296
AcsI	RAATTY	1 cut(s)	199
AcuI	CTGAAG	1 cut(s)	540
AfaI	GTAC	3 cut(s)	5, 335, 470
AfiI	CCNNNNNNNGG	1 cut(s)	478
AleI	CACNNNNGTG	1 cut(s)	131
AluBI	AGCT	5 cut(s)	67, 156, 223, 547, 554
AluI	AGCT	5 cut(s)	67, 156, 223, 547, 554
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	3 cut(s)	281, 374, 425
AlwI	GGATC	3 cut(s)	195, 250, 296
Ama87I	CYCGRG	1 cut(s)	346
AoxI	GGCC	1 cut(s)	293
ApeKI	GCWGC	4 cut(s)	71, 79, 107, 153
ApoI	RAATTY	1 cut(s)	199
ArsI	GACNNNNNNTTYG	2 cut(s)	373, 405
AspS9I	GGNCC	2 cut(s)	181, 294
AsuC2I	CCSGG	3 cut(s)	185, 347, 348
AsuII	TTCGAA	1 cut(s)	227
AvaI	CYCGRG	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	4 cut(s)	58, 66, 94, 165
BccI	CCATC	2 cut(s)	29, 479
BcgI	CGANNNNNNTGC	2 cut(s)	89, 123
BcnI	CCSGG	3 cut(s)	185, 347, 348
BcoDI	GTCTC	3 cut(s)	281, 374, 425
BfaI	CTAG	1 cut(s)	548
BfmI	CTRYAG	4 cut(s)	80, 108, 279, 435
BisI	GCNGC	4 cut(s)	72, 80, 108, 154
BlsI	GCNGC	4 cut(s)	73, 81, 109, 155
Bme1390I	CCNGG	3 cut(s)	185, 347, 348
Bme18I	GGWCC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	346
BmgT120I	GGNCC	2 cut(s)	181, 294
BmiI	GGNNCC	1 cut(s)	296
BmrFI	CCNGG	3 cut(s)	185, 347, 348
BmrI	ACTGGG	1 cut(s)	339
BmsI	GCATC	3 cut(s)	94, 349, 529
BmuI	ACTGGG	1 cut(s)	339
BpmI	CTGGAG	1 cut(s)	34
Bpu14I	TTCGAA	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	3 cut(s)	185, 347, 348
BsaAI	YACGTR	1 cut(s)	161
BsaJI	CCNNGG	4 cut(s)	216, 346, 402, 534
BsaXI	ACNNNNNCTCC	2 cut(s)	452, 482
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
Bse1I	ACTGG	2 cut(s)	17, 334
BseDI	CCNNGG	4 cut(s)	216, 346, 402, 534
BseGI	GGATG	2 cut(s)	487, 544
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	2 cut(s)	17, 334
BseRI	GAGGAG	2 cut(s)	233, 467
BseXI	GCAGC	4 cut(s)	58, 66, 94, 165
BsgI	GTGCAG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	346
BsiSI	CCGG	2 cut(s)	184, 347
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmAI	GTCTC	3 cut(s)	281, 374, 425
BsmFI	GGGAC	1 cut(s)	400
BsmI	GAATGC	1 cut(s)	366
BsnI	GGCC	1 cut(s)	295
BsoBI	CYCGRG	1 cut(s)	346
Bsp119I	TTCGAA	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	5 cut(s)	49, 169, 187, 255, 301
BspACI	CCGC	1 cut(s)	308
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	1 cut(s)	496
BspLI	GGNNCC	1 cut(s)	296
BspMAI	CTGCAG	2 cut(s)	84, 112
BspPI	GGATC	3 cut(s)	195, 250, 296
BspT104I	TTCGAA	1 cut(s)	227
BsrI	ACTGG	2 cut(s)	17, 334
BssECI	CCNNGG	4 cut(s)	216, 346, 402, 534
BssMI	GATC	5 cut(s)	49, 169, 187, 255, 301
BssT1I	CCWWGG	2 cut(s)	402, 534
Bst4CI	ACNGT	3 cut(s)	146, 436, 500
BstBAI	YACGTR	1 cut(s)	161
BstBI	TTCGAA	1 cut(s)	227
BstC8I	GCNNGC	3 cut(s)	69, 97, 364
BstDEI	CTNAG	1 cut(s)	504
BstF5I	GGATG	2 cut(s)	487, 544
BstKTI	GATC	5 cut(s)	52, 172, 190, 258, 304
BstMAI	GTCTC	3 cut(s)	281, 374, 425
BstMBI	GATC	5 cut(s)	49, 169, 187, 255, 301
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 113
BstSCI	CCNGG	3 cut(s)	183, 345, 346
BstSFI	CTRYAG	4 cut(s)	80, 108, 279, 435
BstV1I	GCAGC	4 cut(s)	58, 66, 94, 165
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	295
BtsCI	GGATG	2 cut(s)	487, 544
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	3 cut(s)	69, 97, 364
Cfr13I	GGNCC	2 cut(s)	181, 294
Cfr9I	CCCGGG	1 cut(s)	346
Csp6I	GTAC	3 cut(s)	4, 334, 469
CviAII	CATG	2 cut(s)	28, 477
CviQI	GTAC	3 cut(s)	4, 334, 469
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	5 cut(s)	51, 171, 189, 257, 303
DpnII	GATC	5 cut(s)	49, 169, 187, 255, 301
Eco130I	CCWWGG	2 cut(s)	402, 534
Eco47I	GGWCC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	540
Eco88I	CYCGRG	1 cut(s)	346
EcoT14I	CCWWGG	2 cut(s)	402, 534
ErhI	CCWWGG	2 cut(s)	402, 534
FaeI	CATG	2 cut(s)	31, 480
FaiI	YATR	8 cut(s)	29, 77, 149, 250, 273, 281, 420, 478
FalI	AAGNNNNNCTT	2 cut(s)	355, 387
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	2 cut(s)	27, 476
Fnu4HI	GCNGC	4 cut(s)	72, 80, 108, 154
FokI	GGATG	2 cut(s)	494, 551
Fsp4HI	GCNGC	4 cut(s)	72, 80, 108, 154
FspBI	CTAG	1 cut(s)	548
GluI	GCNGC	4 cut(s)	72, 80, 108, 154
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	295
HapII	CCGG	2 cut(s)	184, 347
Hin1II	CATG	2 cut(s)	31, 480
HindIII	AAGCTT	1 cut(s)	552
HinfI	GANTC	1 cut(s)	351
HpaII	CCGG	2 cut(s)	184, 347
Hpy188I	TCNGA	4 cut(s)	356, 379, 448, 505
Hpy188III	TCNNGA	2 cut(s)	208, 428
Hpy99I	CGWCG	2 cut(s)	104, 452
HpyAV	CCTTC	1 cut(s)	381
HpyCH4III	ACNGT	3 cut(s)	146, 436, 500
HpyCH4IV	ACGT	2 cut(s)	160, 268
HpyCH4V	TGCA	5 cut(s)	55, 82, 110, 362, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 113
HpyF3I	CTNAG	1 cut(s)	504
HpySE526I	ACGT	2 cut(s)	160, 268
Hsp92II	CATG	2 cut(s)	31, 480
Kzo9I	GATC	5 cut(s)	49, 169, 187, 255, 301
LmnI	GCTCC	1 cut(s)	220
Lsp1109I	GCAGC	4 cut(s)	58, 66, 94, 165
LweI	GCATC	3 cut(s)	94, 349, 529
MaeI	CTAG	1 cut(s)	548
MaeII	ACGT	2 cut(s)	160, 268
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	5 cut(s)	51, 171, 189, 257, 303
MboI	GATC	5 cut(s)	49, 169, 187, 255, 301
MboII	GAAGA	2 cut(s)	208, 407
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	4 cut(s)	199, 442, 512, 562
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	6 cut(s)	116, 211, 269, 445, 450, 499
MseI	TTAA	2 cut(s)	203, 441
MslI	CAYNNNNRTG	3 cut(s)	26, 60, 131
MspI	CCGG	2 cut(s)	184, 347
MspR9I	CCNGG	3 cut(s)	185, 347, 348
Mva1269I	GAATGC	1 cut(s)	366
MwoI	GCNNNNNNNGC	2 cut(s)	85, 113
NciI	CCSGG	3 cut(s)	185, 347, 348
NdeII	GATC	5 cut(s)	49, 169, 187, 255, 301
NlaIII	CATG	2 cut(s)	31, 480
NlaIV	GGNNCC	1 cut(s)	296
NmeAIII	GCCGAG	1 cut(s)	241
NspV	TTCGAA	1 cut(s)	227
OliI	CACNNNNGTG	1 cut(s)	131
PctI	GAATGC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	351
PfoI	TCCNGGA	1 cut(s)	183
PkrI	GCNGC	4 cut(s)	73, 81, 109, 155
Ppu21I	YACGTR	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	296
PspPI	GGNCC	2 cut(s)	181, 294
PstI	CTGCAG	2 cut(s)	84, 112
PsuI	RGATCY	1 cut(s)	301
RsaI	GTAC	3 cut(s)	5, 335, 470
RsaNI	GTAC	3 cut(s)	4, 334, 469
RseI	CAYNNNNRTG	3 cut(s)	26, 60, 131
SaqAI	TTAA	2 cut(s)	203, 441
SatI	GCNGC	4 cut(s)	72, 80, 108, 154
Sau3AI	GATC	5 cut(s)	49, 169, 187, 255, 301
Sau96I	GGNCC	2 cut(s)	181, 294
ScrFI	CCNGG	3 cut(s)	185, 347, 348
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	9 cut(s)	69, 158, 163, 183, 225, 271, 496, 549, 556
SfaNI	GCATC	3 cut(s)	94, 349, 529
SfcI	CTRYAG	4 cut(s)	80, 108, 279, 435
SfuI	TTCGAA	1 cut(s)	227
SinI	GGWCC	1 cut(s)	181
SmaI	CCCGGG	1 cut(s)	348
SmiMI	CAYNNNNRTG	3 cut(s)	26, 60, 131
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	4 cut(s)	199, 442, 512, 562
SsiI	CCGC	1 cut(s)	308
SspMI	CTAG	1 cut(s)	548
StyD4I	CCNGG	3 cut(s)	183, 345, 346
StyI	CCWWGG	2 cut(s)	402, 534
TaaI	ACNGT	3 cut(s)	146, 436, 500
TaiI	ACGT	2 cut(s)	163, 271
TaqI	TCGA	2 cut(s)	190, 227
TasI	AATT	4 cut(s)	199, 442, 512, 562
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	2 cut(s)	203, 441
Tru9I	TTAA	2 cut(s)	203, 441
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	4 cut(s)	71, 79, 107, 153
TspDTI	ATGAA	2 cut(s)	28, 363
TspMI	CCCGGG	1 cut(s)	346
TspRI	CASTG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	1 cut(s)	199
XmaI	CCCGGG	1 cut(s)	346
XspI	CTAG	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.