Rh2DG689900
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000326
Physical Location & Seq
Forward (+)
90717578 .. 90718769
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG689900.1

Sequence Viewer

Length: 918 bp
ATGGGTCGAAGTAATACAAAGTTGCCTTTGGAACTAATAAAGAATGAGAAGTCTCGCAATGTCACTTTTCGAAAGAGGAAGAAGGGATTGATGAAGAAGACGTATGAATTGAACAAGCTTTGTGATGTGCAGTGTTCTGTTATCATTTATGAGAACAAAAACGGCCAACTGGTCCGGCCGGATACCTATCCTGAAAACCCTGAAGAGGTCAAGCAAATTATTGATAGATTTGTCTCCAAATCAGCCAAAGTAAGGAAAGTTGAAAACTTGGCTGATTTTTTCAGCAAACAAATCATGCAAGTGAAGAAAGAGACTGCCAAATTGCGCCAAAAGAACAATGAAGCTCGGTTTCCTTCATGGGATGACAGGTTAGATGACTTCTCATTAGATCAATTGCTTGCTCTTTTGAAAAAACTGGAGCACAAAATCGAAGACGTGCACAAGCATTATGATAAGCAATATGCTATTGATGACAGTATACTACAACAAACGGCCTTGTTTCCGAACAACAACGTAGACTATTCACAGATGGTTGCATTGAACCAATACCCTACTAGTGGTTCGATGATGTACACAAGTGATAGGGCTTTGCCTGAAGAACAAACTAATCTCCAAGGCTTGTTTCAGAACAACCTAATCAATTATCACCAGAATTACAATTACTGTTCTATCACGATGAACAACAGAAACGGCATGCCATGGCAGAACTACAACATTCAGAGTGCTCCATCAGCATCAAACGGATCAAATTACGACGAACAAAGTACATCTATGAAGTGTGAAAATCGTCTGCAATACGGAAACATCGATGAAAATTTGACATTATGTAATCACGTCCCACCACAACAGACTGTGTATCCAATGTCCGCAAGTTATTTGTTTGATAATGCAAACCAATTCTTGCATCTCAAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

305

Amino Acids

35.54

Weight (kDa)

8.6

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 13 - 57 1.9e-16 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 478, 516
AciI CCGC 1 cut(s) 867
AclWI GGATC 1 cut(s) 751
AcoI YGGCCR 2 cut(s) 163, 176
AcsI RAATTY 1 cut(s) 814
AcuI CTGAAG 2 cut(s) 222, 615
AfaI GTAC 2 cut(s) 572, 766
AfiI CCNNNNNNNGG 3 cut(s) 205, 252, 557
AgsI TTSAA 4 cut(s) 112, 263, 409, 541
AhlI ACTAGT 1 cut(s) 554
AjiI CACGTC 2 cut(s) 436, 835
AjuI GAANNNNNNNTTGG 2 cut(s) 606, 638
AluBI AGCT 2 cut(s) 118, 344
AluI AGCT 2 cut(s) 118, 344
Alw21I GWGCWC 3 cut(s) 423, 441, 727
Alw26I GTCTC 3 cut(s) 57, 238, 305
Alw44I GTGCAC 1 cut(s) 437
AlwI GGATC 1 cut(s) 751
AoxI GGCC 3 cut(s) 163, 176, 492
ApaLI GTGCAC 1 cut(s) 437
ApoI RAATTY 1 cut(s) 814
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 638
AsuII TTCGAA 1 cut(s) 70
AvaII GGWCC 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 441
BbsI GAAGAC 2 cut(s) 104, 438
Bbv12I GWGCWC 3 cut(s) 423, 441, 727
BccI CCATC 2 cut(s) 523, 736
BceAI ACGGC 3 cut(s) 178, 507, 706
BciVI GTATCC 2 cut(s) 175, 867
BcoDI GTCTC 3 cut(s) 57, 238, 305
BcuI ACTAGT 1 cut(s) 554
BfaI CTAG 2 cut(s) 555, 916
BfuI GTATCC 2 cut(s) 175, 867
Bme18I GGWCC 1 cut(s) 172
BmgBI CACGTC 2 cut(s) 436, 835
BmgT120I GGNCC 1 cut(s) 172
BmsI GCATC 2 cut(s) 743, 913
BpiI GAAGAC 2 cut(s) 104, 438
BpmI CTGGAG 1 cut(s) 437
Bpu14I TTCGAA 1 cut(s) 70
Bsa29I ATCGAT 1 cut(s) 807
BsaBI GATNNNNATC 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 613, 698
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 252, 557
Bse1I ACTGG 2 cut(s) 174, 420
Bse3DI GCAATG 1 cut(s) 64
Bse8I GATNNNNATC 1 cut(s) 186
BseCI ATCGAT 1 cut(s) 807
BseDI CCNNGG 2 cut(s) 613, 698
BseGI GGATG 1 cut(s) 367
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 3 cut(s) 205, 252, 557
BseMI GCAATG 1 cut(s) 64
BseNI ACTGG 2 cut(s) 174, 420
BseSI GKGCMC 1 cut(s) 441
BseX3I CGGCCG 1 cut(s) 176
BsgI GTGCAG 1 cut(s) 149
Bsh1285I CGRYCG 1 cut(s) 179
BshFI GGCC 3 cut(s) 165, 178, 494
BshVI ATCGAT 1 cut(s) 807
BsiEI CGRYCG 1 cut(s) 179
BsiHKAI GWGCWC 3 cut(s) 423, 441, 727
BsiSI CCGG 2 cut(s) 175, 179
BslFI GGGAC 1 cut(s) 821
BslI CCNNNNNNNGG 3 cut(s) 205, 252, 557
BsmAI GTCTC 3 cut(s) 57, 238, 305
BsmFI GGGAC 1 cut(s) 821
BsnI GGCC 3 cut(s) 165, 178, 494
Bsp119I TTCGAA 1 cut(s) 70
Bsp1286I GDGCHC 3 cut(s) 423, 441, 727
Bsp1407I TGTACA 1 cut(s) 570
Bsp143I GATC 2 cut(s) 388, 743
Bsp19I CCATGG 1 cut(s) 698
BspACI CCGC 1 cut(s) 867
BspANI GGCC 3 cut(s) 165, 178, 494
BspDI ATCGAT 1 cut(s) 807
BspPI GGATC 1 cut(s) 751
BspT104I TTCGAA 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 64
BsrGI TGTACA 1 cut(s) 570
BsrI ACTGG 2 cut(s) 174, 420
BssECI CCNNGG 2 cut(s) 613, 698
BssMI GATC 2 cut(s) 388, 743
BssNAI GTATAC 1 cut(s) 479
BssT1I CCWWGG 2 cut(s) 613, 698
Bst1107I GTATAC 1 cut(s) 479
Bst4CI ACNGT 3 cut(s) 476, 665, 853
Bst6I CTCTTC 1 cut(s) 198
BstAUI TGTACA 1 cut(s) 570
BstBI TTCGAA 1 cut(s) 70
BstC8I GCNNGC 2 cut(s) 399, 695
BstDSI CCRYGG 1 cut(s) 698
BstF5I GGATG 1 cut(s) 367
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 2 cut(s) 391, 746
BstMAI GTCTC 3 cut(s) 57, 238, 305
BstMBI GATC 2 cut(s) 388, 743
BstMCI CGRYCG 1 cut(s) 179
BstMWI GCNNNNNNNGC 1 cut(s) 731
BstNSI RCATGY 1 cut(s) 697
BstSLI GKGCMC 1 cut(s) 441
BstV2I GAAGAC 2 cut(s) 104, 438
BstZ17I GTATAC 1 cut(s) 479
BstZI CGGCCG 1 cut(s) 176
Bsu15I ATCGAT 1 cut(s) 807
BsuI GTATCC 2 cut(s) 175, 867
BsuRI GGCC 3 cut(s) 165, 178, 494
BsuTUI ATCGAT 1 cut(s) 807
BtgI CCRYGG 1 cut(s) 698
BtrI CACGTC 2 cut(s) 436, 835
BtsCI GGATG 1 cut(s) 367
BtsI GCAGTG 1 cut(s) 137
BtsIMutI CAGTG 1 cut(s) 137
Cac8I GCNNGC 2 cut(s) 399, 695
CfoI GCGC 1 cut(s) 327
Cfr13I GGNCC 1 cut(s) 172
ClaI ATCGAT 1 cut(s) 807
Csp6I GTAC 2 cut(s) 571, 765
CviAII CATG 4 cut(s) 295, 357, 694, 699
CviQI GTAC 2 cut(s) 571, 765
DpnI GATC 2 cut(s) 390, 745
DpnII GATC 2 cut(s) 388, 743
EaeI YGGCCR 2 cut(s) 163, 176
EagI CGGCCG 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
EclXI CGGCCG 1 cut(s) 176
Eco130I CCWWGG 2 cut(s) 613, 698
Eco47I GGWCC 1 cut(s) 172
Eco52I CGGCCG 1 cut(s) 176
Eco57I CTGAAG 2 cut(s) 222, 615
EcoT14I CCWWGG 2 cut(s) 613, 698
ErhI CCWWGG 2 cut(s) 613, 698
FaeI CATG 4 cut(s) 298, 360, 697, 702
FaqI GGGAC 1 cut(s) 821
FatI CATG 4 cut(s) 294, 356, 693, 698
FblI GTMKAC 2 cut(s) 478, 516
FokI GGATG 1 cut(s) 374
FspBI CTAG 2 cut(s) 555, 916
GlaI GCGC 1 cut(s) 326
GsuI CTGGAG 1 cut(s) 437
HaeIII GGCC 3 cut(s) 165, 178, 494
HapII CCGG 2 cut(s) 175, 179
HhaI GCGC 1 cut(s) 327
Hin1II CATG 4 cut(s) 298, 360, 697, 702
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 116
HpaII CCGG 2 cut(s) 175, 179
HphI GGTGA 1 cut(s) 638
Hpy166II GTNNAC 4 cut(s) 439, 479, 517, 573
Hpy188I TCNGA 3 cut(s) 504, 627, 720
Hpy188III TCNNGA 2 cut(s) 191, 673
Hpy8I GTNNAC 4 cut(s) 439, 479, 517, 573
Hpy99I CGWCG 1 cut(s) 758
HpyAV CCTTC 2 cut(s) 76, 363
HpyCH4III ACNGT 3 cut(s) 476, 665, 853
HpyCH4IV ACGT 4 cut(s) 101, 435, 513, 834
HpyCH4V TGCA 7 cut(s) 130, 298, 439, 536, 793, 890, 904
HpyF10VI GCNNNNNNNGC 1 cut(s) 731
HpySE526I ACGT 4 cut(s) 101, 435, 513, 834
Hsp92II CATG 4 cut(s) 298, 360, 697, 702
HspAI GCGC 1 cut(s) 325
Kzo9I GATC 2 cut(s) 388, 743
LmnI GCTCC 2 cut(s) 418, 730
LpnPI CCDG 9 cut(s) 155, 188, 192, 204, 213, 352, 401, 606, 662
LweI GCATC 2 cut(s) 743, 913
MaeI CTAG 2 cut(s) 555, 916
MaeII ACGT 4 cut(s) 101, 435, 513, 834
MaeIII GTNAC 1 cut(s) 61
MalI GATC 2 cut(s) 390, 745
MboI GATC 2 cut(s) 388, 743
MboII GAAGA 7 cut(s) 91, 106, 109, 215, 316, 443, 608
MfeI CAATTG 1 cut(s) 392
MhlI GDGCHC 3 cut(s) 423, 441, 727
MnlI CCTC 2 cut(s) 69, 199
MslI CAYNNNNRTG 1 cut(s) 299
MspI CCGG 2 cut(s) 175, 179
MunI CAATTG 1 cut(s) 392
MwoI GCNNNNNNNGC 1 cut(s) 731
NcoI CCATGG 1 cut(s) 698
NdeII GATC 2 cut(s) 388, 743
NlaIII CATG 4 cut(s) 298, 360, 697, 702
NmuCI GTSAC 1 cut(s) 61
NspI RCATGY 1 cut(s) 697
NspV TTCGAA 1 cut(s) 70
PaeI GCATGC 1 cut(s) 697
PcsI WCGNNNNNNNCGW 1 cut(s) 804
PspPI GGNCC 1 cut(s) 172
RsaI GTAC 2 cut(s) 572, 766
RsaNI GTAC 2 cut(s) 571, 765
RseI CAYNNNNRTG 1 cut(s) 299
Sau3AI GATC 2 cut(s) 388, 743
Sau96I GGNCC 1 cut(s) 172
SduI GDGCHC 3 cut(s) 423, 441, 727
SfaNI GCATC 2 cut(s) 743, 913
SfuI TTCGAA 1 cut(s) 70
SinI GGWCC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 299
SpeI ACTAGT 1 cut(s) 554
SphI GCATGC 1 cut(s) 697
SsiI CCGC 1 cut(s) 867
SspMI CTAG 2 cut(s) 555, 916
StyI CCWWGG 2 cut(s) 613, 698
TaaI ACNGT 3 cut(s) 476, 665, 853
TaiI ACGT 4 cut(s) 104, 438, 516, 837
TaqI TCGA 5 cut(s) 7, 70, 429, 563, 807
TatI WGTACW 2 cut(s) 570, 764
TscAI CASTG 1 cut(s) 137
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 7 cut(s) 107, 120, 345, 354, 692, 788, 825
TspGWI ACGGA 2 cut(s) 756, 813
TspRI CASTG 1 cut(s) 137
VneI GTGCAC 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 172
XapI RAATTY 1 cut(s) 814
XceI RCATGY 1 cut(s) 697
XmiI GTMKAC 2 cut(s) 478, 516
XspI CTAG 2 cut(s) 555, 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.