pycom06g01170

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000326
Physical Location & Seq
Reverse (-)
1226988 .. 1228528
1541 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g01170.2

Sequence Viewer

Length: 1077 bp
ATGGGTCGACGCAAATCAAAGTTACCTTTAGAGCTAATACCGAATGAAAGTTCGCGCAAGGTTACTTTTCGAAAGAGAAGAAATGGATTGTTGAAGAAGGCAGGTGATTTGAAAACACTTTGTGATGTGAAGGTGTGTACTATCGTTTATGATAAGAAATCCAAGGGAAAACTGAGCACAGCAGCAACTTTTCCTAAGGAATTTAAAGATGTCAAGGAAATAATTGATAATTACAAATCGAATTCATCGAAAGTAAAGAGAGTTCAAAGTTTGGGTGACTTCTATGCCACGCAAACGGTTCAAGTGAAGAAAGAGATTGGGAAACTGCATAGTAAGATTTGTGAAGAGAAGTATCCTGCATGGGATGATCGTTTCAATGCGTTTTCAGCAGAGCAAATGCTTGACCTTTTGAGAAATTTGGAGAACAAAATTGTAGCTGCTCATGAGATGCATAGCACGATGAAGGAATCAAAGCAAATTGTTGTGCAAGAGATTATACCACCAATGGCCATGTTTCAAAGCAACCAAGAGTATTCCCAGATGCTCGGATTATCTGATCAAAAAGCGAGTTATTGTTCAATGATGATGAATGATGATTGGACTCAATTTGCAAGCACATCACAGACCAACAACAACATTCAGTACACTCCTTCAGCTAGTGCTTCGAACTCCAACTGCAAAACATCTACGTGGGAGCATGATCAGATCTTTAACAATAATTATATTTCTGCAGCGTATGGAAATATGGACGAGAATGCAACTTTCTATAATCCTATGCAGCAGCGACCATGCATGTACGACTCAATATTTTCAAGTGCTGCATCTCAACAGCAGCAACAACAAGCAGTTGTTCCAAGTGTTGAAAACCCTAACCCCATCGACGCGCTTCCTCTGAGTACTGTTTTGTACGAGTACGATCATCCCCTCTCTGTGACAATGCCGAGTTATCTGGAGTGTCCAATTTCAGCAAGTGCTTCTGCTTCATCATCCGGATACGATCAGCAGTTTGGTGCATCTCAATCACAGAACACGTTCTATGATGACGTATTCTATGATAACTTGTGGCATTTCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

359

Amino Acids

40.68

Weight (kDa)

6.34

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 92
AccI GTMKAC 1 cut(s) 7
AccII CGCG 2 cut(s) 55, 884
AccIII TCCGGA 1 cut(s) 989
AcoI YGGCCR 1 cut(s) 507
AcsI RAATTY 3 cut(s) 200, 241, 415
AcuI CTGAAG 1 cut(s) 636
AdeI CACNNNGTG 1 cut(s) 122
AfaI GTAC 6 cut(s) 139, 644, 797, 898, 908, 914
AflIII ACRYGT 1 cut(s) 1029
AgsI TTSAA 9 cut(s) 94, 112, 266, 302, 376, 518, 579, 813, 863
AluBI AGCT 3 cut(s) 34, 437, 656
AluI AGCT 3 cut(s) 34, 437, 656
Alw21I GWGCWC 1 cut(s) 179
Aor13HI TCCGGA 1 cut(s) 989
AoxI GGCC 1 cut(s) 507
ApeKI GCWGC 7 cut(s) 182, 437, 731, 778, 781, 818, 832
ApoI RAATTY 3 cut(s) 200, 241, 415
Asp700I GAANNNNTTC 1 cut(s) 1031
AspLEI GCGC 2 cut(s) 57, 886
AsuHPI GGTGA 2 cut(s) 116, 287
AsuII TTCGAA 3 cut(s) 70, 665, 1071
AxyI CCTNAGG 1 cut(s) 195
BalI TGGCCA 1 cut(s) 509
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 7 cut(s) 194, 424, 743, 790, 793, 805, 844
BccI CCATC 1 cut(s) 884
BciVI GTATCC 2 cut(s) 363, 986
BclI TGATCA 2 cut(s) 556, 700
BfaI CTAG 1 cut(s) 657
BfmI CTRYAG 1 cut(s) 729
BfuAI ACCTGC 1 cut(s) 92
BfuI GTATCC 2 cut(s) 363, 986
BglII AGATCT 1 cut(s) 705
BisI GCNGC 7 cut(s) 183, 438, 732, 779, 782, 819, 833
BlsI GCNGC 7 cut(s) 184, 439, 733, 780, 783, 820, 834
BmcAI AGTACT 1 cut(s) 898
BmsI GCATC 4 cut(s) 438, 531, 830, 1022
BpmI CTGGAG 1 cut(s) 971
Bpu14I TTCGAA 3 cut(s) 70, 665, 1071
BsaAI YACGTR 1 cut(s) 690
BsaJI CCNNGG 1 cut(s) 162
BsaWI WCCGGW 1 cut(s) 989
Bse21I CCTNAGG 1 cut(s) 195
BseAI TCCGGA 1 cut(s) 989
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 3 cut(s) 370, 919, 986
BseMII CTCAG 2 cut(s) 164, 884
BseXI GCAGC 7 cut(s) 194, 424, 743, 790, 793, 805, 844
Bsh1236I CGCG 2 cut(s) 55, 884
BshFI GGCC 1 cut(s) 509
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 990
BsmI GAATGC 1 cut(s) 760
BsnI GGCC 1 cut(s) 509
Bsp119I TTCGAA 3 cut(s) 70, 665, 1071
Bsp1286I GDGCHC 1 cut(s) 179
Bsp13I TCCGGA 1 cut(s) 989
Bsp143I GATC 6 cut(s) 367, 556, 700, 705, 916, 997
BspANI GGCC 1 cut(s) 509
BspCNI CTCAG 2 cut(s) 165, 885
BspEI TCCGGA 1 cut(s) 989
BspFNI CGCG 2 cut(s) 55, 884
BspHI TCATGA 1 cut(s) 442
BspMAI CTGCAG 1 cut(s) 733
BspMI ACCTGC 1 cut(s) 92
BspT104I TTCGAA 3 cut(s) 70, 665, 1071
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 6 cut(s) 367, 556, 700, 705, 916, 997
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 2 cut(s) 298, 901
Bst6I CTCTTC 1 cut(s) 339
BstBAI YACGTR 1 cut(s) 690
BstBI TTCGAA 3 cut(s) 70, 665, 1071
BstC8I GCNNGC 1 cut(s) 613
BstDEI CTNAG 3 cut(s) 173, 195, 893
BstF5I GGATG 3 cut(s) 370, 919, 986
BstFNI CGCG 2 cut(s) 55, 884
BstHHI GCGC 2 cut(s) 57, 886
BstKTI GATC 6 cut(s) 370, 559, 703, 708, 919, 1000
BstMBI GATC 6 cut(s) 367, 556, 700, 705, 916, 997
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNSI RCATGY 1 cut(s) 796
BstSFI CTRYAG 1 cut(s) 729
BstUI CGCG 2 cut(s) 55, 884
BstV1I GCAGC 7 cut(s) 194, 424, 743, 790, 793, 805, 844
BstX2I RGATCY 1 cut(s) 705
BstYI RGATCY 1 cut(s) 705
Bsu36I CCTNAGG 1 cut(s) 195
BsuI GTATCC 2 cut(s) 363, 986
BsuRI GGCC 1 cut(s) 509
BtsCI GGATG 3 cut(s) 370, 919, 986
BveI ACCTGC 1 cut(s) 92
Cac8I GCNNGC 1 cut(s) 613
CciI TCATGA 1 cut(s) 442
CfoI GCGC 2 cut(s) 57, 886
CseI GACGC 2 cut(s) 18, 890
Csp6I GTAC 6 cut(s) 138, 643, 796, 897, 907, 913
CviAII CATG 6 cut(s) 360, 443, 511, 698, 789, 793
CviJI RGCY 4 cut(s) 34, 437, 509, 656
CviKI_1 RGCY 4 cut(s) 34, 437, 509, 656
CviQI GTAC 6 cut(s) 138, 643, 796, 897, 907, 913
DdeI CTNAG 3 cut(s) 173, 195, 893
DpnI GATC 6 cut(s) 369, 558, 702, 707, 918, 999
DpnII GATC 6 cut(s) 367, 556, 700, 705, 916, 997
DraI TTTAAA 1 cut(s) 205
DraIII CACNNNGTG 1 cut(s) 122
EaeI YGGCCR 1 cut(s) 507
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 636
Eco81I CCTNAGG 1 cut(s) 195
EcoRI GAATTC 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 162
EcoT22I ATGCAT 2 cut(s) 453, 794
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 6 cut(s) 363, 446, 514, 701, 792, 796
FatI CATG 6 cut(s) 359, 442, 510, 697, 788, 792
FbaI TGATCA 2 cut(s) 556, 700
FblI GTMKAC 1 cut(s) 7
Fnu4HI GCNGC 7 cut(s) 183, 438, 732, 779, 782, 819, 833
FokI GGATG 3 cut(s) 377, 906, 973
Fsp4HI GCNGC 7 cut(s) 183, 438, 732, 779, 782, 819, 833
FspBI CTAG 1 cut(s) 657
GlaI GCGC 2 cut(s) 56, 885
GluI GCNGC 7 cut(s) 183, 438, 732, 779, 782, 819, 833
GsuI CTGGAG 1 cut(s) 971
HaeIII GGCC 1 cut(s) 509
HapII CCGG 1 cut(s) 990
HgaI GACGC 2 cut(s) 18, 890
HhaI GCGC 2 cut(s) 57, 886
Hin1II CATG 6 cut(s) 363, 446, 514, 701, 792, 796
Hin6I GCGC 2 cut(s) 55, 884
HinP1I GCGC 2 cut(s) 55, 884
HincII GTYRAC 1 cut(s) 8
HindII GTYRAC 1 cut(s) 8
HinfI GANTC 3 cut(s) 467, 601, 800
HpaII CCGG 1 cut(s) 990
HphI GGTGA 2 cut(s) 116, 287
Hpy166II GTNNAC 3 cut(s) 8, 138, 645
Hpy188I TCNGA 4 cut(s) 548, 556, 705, 894
Hpy188III TCNNGA 3 cut(s) 443, 950, 990
Hpy8I GTNNAC 3 cut(s) 8, 138, 645
Hpy99I CGWCG 2 cut(s) 12, 884
HpyAV CCTTC 4 cut(s) 91, 124, 457, 660
HpyCH4III ACNGT 2 cut(s) 298, 901
HpyCH4IV ACGT 3 cut(s) 689, 1031, 1044
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpyF3I CTNAG 3 cut(s) 173, 195, 893
HpySE526I ACGT 3 cut(s) 689, 1031, 1044
Hsp92II CATG 6 cut(s) 363, 446, 514, 701, 792, 796
HspAI GCGC 2 cut(s) 55, 884
Kpn2I TCCGGA 1 cut(s) 989
Ksp22I TGATCA 2 cut(s) 556, 700
Kzo9I GATC 6 cut(s) 367, 556, 700, 705, 916, 997
LmnI GCTCC 1 cut(s) 694
LpnPI CCDG 5 cut(s) 87, 369, 551, 935, 1003
Lsp1109I GCAGC 7 cut(s) 194, 424, 743, 790, 793, 805, 844
LweI GCATC 4 cut(s) 438, 531, 830, 1022
MaeI CTAG 1 cut(s) 657
MaeII ACGT 3 cut(s) 689, 1031, 1044
MaeIII GTNAC 4 cut(s) 21, 61, 275, 931
MalI GATC 6 cut(s) 369, 558, 702, 707, 918, 999
MboI GATC 6 cut(s) 367, 556, 700, 705, 916, 997
MboII GAAGA 4 cut(s) 90, 106, 319, 356
MflI RGATCY 1 cut(s) 705
MhlI GDGCHC 1 cut(s) 179
MlsI TGGCCA 1 cut(s) 509
MluNI TGGCCA 1 cut(s) 509
MlyI GAGTC 2 cut(s) 595, 794
MmeI TCCRAC 1 cut(s) 696
MnlI CCTC 2 cut(s) 900, 935
Mox20I TGGCCA 1 cut(s) 509
Mph1103I ATGCAT 2 cut(s) 453, 794
MroI TCCGGA 1 cut(s) 989
MroXI GAANNNNTTC 1 cut(s) 1031
MscI TGGCCA 1 cut(s) 509
MseI TTAA 2 cut(s) 204, 711
MslI CAYNNNNRTG 1 cut(s) 688
Msp20I TGGCCA 1 cut(s) 509
MspI CCGG 1 cut(s) 990
Mva1269I GAATGC 1 cut(s) 760
MvnI CGCG 2 cut(s) 55, 884
MwoI GCNNNNNNNGC 1 cut(s) 386
NdeII GATC 6 cut(s) 367, 556, 700, 705, 916, 997
NlaIII CATG 6 cut(s) 363, 446, 514, 701, 792, 796
NmeAIII GCCGAG 1 cut(s) 966
NmuCI GTSAC 2 cut(s) 275, 931
NsiI ATGCAT 2 cut(s) 453, 794
NspI RCATGY 1 cut(s) 796
NspV TTCGAA 3 cut(s) 70, 665, 1071
PagI TCATGA 1 cut(s) 442
PaqCI CACCTGC 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 245
PctI GAATGC 1 cut(s) 760
PdmI GAANNNNTTC 1 cut(s) 1031
PfeI GAWTC 1 cut(s) 467
PkrI GCNGC 7 cut(s) 184, 439, 733, 780, 783, 820, 834
PleI GAGTC 2 cut(s) 595, 794
PpsI GAGTC 2 cut(s) 595, 794
Ppu21I YACGTR 1 cut(s) 690
PsrI GAACNNNNNNTAC 2 cut(s) 246, 278
PstI CTGCAG 1 cut(s) 733
PsuI RGATCY 1 cut(s) 705
RsaI GTAC 6 cut(s) 139, 644, 797, 898, 908, 914
RsaNI GTAC 6 cut(s) 138, 643, 796, 897, 907, 913
RseI CAYNNNNRTG 1 cut(s) 688
SalI GTCGAC 1 cut(s) 6
SaqAI TTAA 2 cut(s) 204, 711
SatI GCNGC 7 cut(s) 183, 438, 732, 779, 782, 819, 833
Sau3AI GATC 6 cut(s) 367, 556, 700, 705, 916, 997
ScaI AGTACT 1 cut(s) 898
SchI GAGTC 2 cut(s) 595, 794
SduI GDGCHC 1 cut(s) 179
SfaNI GCATC 4 cut(s) 438, 531, 830, 1022
SfcI CTRYAG 1 cut(s) 729
SfuI TTCGAA 3 cut(s) 70, 665, 1071
SmiMI CAYNNNNRTG 1 cut(s) 688
SspI AATATT 1 cut(s) 807
SspMI CTAG 1 cut(s) 657
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 298, 901
TaiI ACGT 3 cut(s) 692, 1034, 1047
TaqI TCGA 7 cut(s) 7, 70, 239, 248, 665, 879, 1071
TatI WGTACW 3 cut(s) 137, 642, 896
TfiI GAWTC 1 cut(s) 467
Tru1I TTAA 2 cut(s) 204, 711
Tru9I TTAA 2 cut(s) 204, 711
TseFI GTSAC 2 cut(s) 275, 931
TseI GCWGC 7 cut(s) 182, 437, 731, 778, 781, 818, 832
Tsp45I GTSAC 2 cut(s) 275, 931
TspDTI ATGAA 5 cut(s) 60, 234, 476, 602, 972
XapI RAATTY 3 cut(s) 200, 241, 415
XceI RCATGY 1 cut(s) 796
XmiI GTMKAC 1 cut(s) 7
XmnI GAANNNNTTC 1 cut(s) 1031
XspI CTAG 1 cut(s) 657
ZrmI AGTACT 1 cut(s) 898
Zsp2I ATGCAT 2 cut(s) 453, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.