Prupe.3G306000_v2.0.a1
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000326
Physical Location & Seq
Forward (+)
26780408 .. 26781729
1322 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G306000.1

Sequence Viewer

Length: 1128 bp
ATGGGTCGACGTAAGACAAAGCTAGCTTTGGAGCTGATTCAGGACGACAAAGCTCGCAAGGTTACTTTTCGGAAGAGAAAGAATGGATTGTTTAAGAAGGCTTTTGAGTTAACCACCCTTTGTGATGTGAAGGTGTGTACAATCGTTTATGAGAAGAAATCCGAGGGCAAACTGGCCCCTCCTCAAACCTTCCCTGCGAAATTTGAAGAGGTGAAGGAAATCATTGACAAGTACAAGTCCAATTCATCAAAGATCAAGAAAGTTCAGAACTTGGCTGACTTTTATGCCACCCAAACAATGCAAGTTAAGAAAGAGATTGTGAAACTACGCACCAAGAGTTATGAAGAGAAGTATCCTACATGGGACGACCGTCTTAATGAGTATTCATTGGACCAAATGCAAGAGCTTTTAAACAATTTAGAGGCCAAAATTCAAGCTGCCCACAAGATACACAACATGATGATGATCGATTCAAAGAAACCTGCAATACAAGATTATATACCCCCAATGGCCTTGGTTCAAAGCAACCTAGACCCTCCATTTCTTTCAATGGTTGATGATCAGAACCCTAGTAATTATGGTTCAATGGGGATGAGCGAAAGTGGCTGGGATCAATTTGCATCTGCAAGCACTTCATGGGCCAATAACAACATTCAGTATGCTCCATCAAATGTTTCGGATTATAAGGGCACGACATCTATCTGGGATTATGACCTGTTTGGAATTGATGCAGTTCCTCTGCAATATGGAAATATGGAGGAGAAGCCGACATTCTATAATAATAATCCCATGCAACCACCATATATGCACGACCCGATATTGTCCAGTGCTGCTACGACATCTCAAGTTGAACAACAACAACTAAGCGTTGAACATGCTCTGGACGTGCCTCCAATAAATGTTGCATATGATGAACCGCTTTCTCTATCCTTGCAACCAAGTCATACCGATTGTCCAGTCTCGGCAGCTTCTTTTTCATTTGAATATCAACAGTTTGCTACTTCATCTCAGTCTGAATCTCAATCTCAATCTCAATCTCAATCTCAATCTTATGTTGATGATCAAGTGCGCATGTTGTACGACAGCATGTTCCAATTCAAACAGAACAACGTATCCACGTATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

376

Amino Acids

42.84

Weight (kDa)

5.54

Isoelectric Point (pI)

52.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 684
Acc16I TGCGCA 1 cut(s) 1070
Acc36I ACCTGC 1 cut(s) 490
AccI GTMKAC 1 cut(s) 7
AciI CCGC 1 cut(s) 917
AclWI GGATC 1 cut(s) 618
AcsI RAATTY 2 cut(s) 200, 429
AfaI GTAC 3 cut(s) 139, 233, 1079
AjiI CACGTC 1 cut(s) 886
AloI GAACNNNNNNTCC 1 cut(s) 1097
AluBI AGCT 7 cut(s) 22, 26, 34, 53, 406, 437, 968
AluI AGCT 7 cut(s) 22, 26, 34, 53, 406, 437, 968
Alw26I GTCTC 1 cut(s) 964
AlwI GGATC 1 cut(s) 618
AoxI GGCC 4 cut(s) 174, 423, 510, 639
ApeKI GCWGC 3 cut(s) 437, 830, 965
ApoI RAATTY 2 cut(s) 200, 429
AspLEI GCGC 1 cut(s) 1071
AspS9I GGNCC 3 cut(s) 175, 391, 639
AsuHPI GGTGA 1 cut(s) 223
AsuNHI GCTAGC 1 cut(s) 22
AvaII GGWCC 1 cut(s) 391
BaeGI GKGCMC 1 cut(s) 692
BbvI GCAGC 3 cut(s) 424, 817, 977
BccI CCATC 1 cut(s) 673
BciVI GTATCC 2 cut(s) 363, 1123
BclI TGATCA 2 cut(s) 559, 1060
BcoDI GTCTC 1 cut(s) 964
BfaI CTAG 3 cut(s) 23, 530, 570
BfuAI ACCTGC 1 cut(s) 490
BfuI GTATCC 2 cut(s) 363, 1123
BisI GCNGC 3 cut(s) 438, 831, 966
BlsI GCNGC 3 cut(s) 439, 832, 967
Bme18I GGWCC 1 cut(s) 391
BmgBI CACGTC 1 cut(s) 886
BmgT120I GGNCC 3 cut(s) 175, 391, 639
BmiI GGNNCC 1 cut(s) 177
BmsI GCATC 2 cut(s) 629, 718
BmtI GCTAGC 1 cut(s) 26
BoxI GACNNNNGTC 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 828
Bsa29I ATCGAT 1 cut(s) 468
BsaAI YACGTR 1 cut(s) 1119
BsaBI GATNNNNATC 1 cut(s) 464
BsaJI CCNNGG 2 cut(s) 162, 513
Bse1I ACTGG 3 cut(s) 177, 825, 956
Bse8I GATNNNNATC 1 cut(s) 464
BseCI ATCGAT 1 cut(s) 468
BseDI CCNNGG 2 cut(s) 162, 513
BseGI GGATG 1 cut(s) 597
BseJI GATNNNNATC 1 cut(s) 464
BseMII CTCAG 1 cut(s) 1022
BseNI ACTGG 3 cut(s) 177, 825, 956
BseRI GAGGAG 2 cut(s) 171, 773
BseSI GKGCMC 1 cut(s) 692
BseXI GCAGC 3 cut(s) 424, 817, 977
BseYI CCCAGC 1 cut(s) 606
Bsh1285I CGRYCG 1 cut(s) 370
BshFI GGCC 4 cut(s) 176, 425, 512, 641
BshVI ATCGAT 1 cut(s) 468
BsiEI CGRYCG 1 cut(s) 370
BslFI GGGAC 1 cut(s) 377
BsmAI GTCTC 1 cut(s) 964
BsmFI GGGAC 1 cut(s) 377
BsnI GGCC 4 cut(s) 176, 425, 512, 641
Bsp1286I GDGCHC 1 cut(s) 692
Bsp1407I TGTACA 1 cut(s) 137
Bsp143I GATC 5 cut(s) 252, 465, 559, 610, 1060
BspACI CCGC 1 cut(s) 917
BspANI GGCC 4 cut(s) 176, 425, 512, 641
BspCNI CTCAG 1 cut(s) 1021
BspDI ATCGAT 1 cut(s) 468
BspLI GGNNCC 1 cut(s) 177
BspMI ACCTGC 1 cut(s) 490
BspOI GCTAGC 1 cut(s) 26
BspPI GGATC 1 cut(s) 618
BsrGI TGTACA 1 cut(s) 137
BsrI ACTGG 3 cut(s) 177, 825, 956
BssECI CCNNGG 2 cut(s) 162, 513
BssMI GATC 5 cut(s) 252, 465, 559, 610, 1060
BssT1I CCWWGG 1 cut(s) 513
Bst4CI ACNGT 2 cut(s) 371, 993
Bst6I CTCTTC 3 cut(s) 68, 201, 339
BstAUI TGTACA 1 cut(s) 137
BstBAI YACGTR 1 cut(s) 1119
BstC8I GCNNGC 3 cut(s) 24, 55, 628
BstDEI CTNAG 2 cut(s) 863, 1008
BstF5I GGATG 1 cut(s) 597
BstHHI GCGC 1 cut(s) 1071
BstKTI GATC 5 cut(s) 255, 468, 562, 613, 1063
BstMAI GTCTC 1 cut(s) 964
BstMBI GATC 5 cut(s) 252, 465, 559, 610, 1060
BstMCI CGRYCG 1 cut(s) 370
BstMWI GCNNNNNNNGC 1 cut(s) 603
BstNSI RCATGY 3 cut(s) 878, 1075, 1090
BstPAI GACNNNNGTC 1 cut(s) 369
BstSLI GKGCMC 1 cut(s) 692
BstV1I GCAGC 3 cut(s) 424, 817, 977
Bsu15I ATCGAT 1 cut(s) 468
BsuI GTATCC 2 cut(s) 363, 1123
BsuRI GGCC 4 cut(s) 176, 425, 512, 641
BsuTUI ATCGAT 1 cut(s) 468
BtrI CACGTC 1 cut(s) 886
BtsCI GGATG 1 cut(s) 597
BtsIMutI CAGTG 1 cut(s) 832
BveI ACCTGC 1 cut(s) 490
Cac8I GCNNGC 3 cut(s) 24, 55, 628
CfoI GCGC 1 cut(s) 1071
Cfr13I GGNCC 3 cut(s) 175, 391, 639
ClaI ATCGAT 1 cut(s) 468
Csp6I GTAC 3 cut(s) 138, 232, 1078
CviAII CATG 7 cut(s) 360, 457, 636, 790, 875, 1072, 1087
CviQI GTAC 3 cut(s) 138, 232, 1078
DdeI CTNAG 2 cut(s) 863, 1008
DpnI GATC 5 cut(s) 254, 467, 561, 612, 1062
DpnII GATC 5 cut(s) 252, 465, 559, 610, 1060
DraI TTTAAA 1 cut(s) 411
Eam1104I CTCTTC 3 cut(s) 68, 201, 339
EarI CTCTTC 3 cut(s) 68, 201, 339
Eco130I CCWWGG 1 cut(s) 513
Eco47I GGWCC 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 7 cut(s) 363, 460, 639, 793, 878, 1075, 1090
FaqI GGGAC 1 cut(s) 377
FatI CATG 7 cut(s) 359, 456, 635, 789, 874, 1071, 1086
FauNDI CATATG 1 cut(s) 907
FbaI TGATCA 2 cut(s) 559, 1060
FblI GTMKAC 1 cut(s) 7
Fnu4HI GCNGC 3 cut(s) 438, 831, 966
FokI GGATG 1 cut(s) 604
Fsp4HI GCNGC 3 cut(s) 438, 831, 966
FspAI RTGCGCAY 1 cut(s) 1070
FspBI CTAG 3 cut(s) 23, 530, 570
FspI TGCGCA 1 cut(s) 1070
GlaI GCGC 1 cut(s) 1070
GluI GCNGC 3 cut(s) 438, 831, 966
GsaI CCCAGC 1 cut(s) 610
HaeIII GGCC 4 cut(s) 176, 425, 512, 641
HhaI GCGC 1 cut(s) 1071
Hin1II CATG 7 cut(s) 363, 460, 639, 793, 878, 1075, 1090
Hin6I GCGC 1 cut(s) 1069
HinP1I GCGC 1 cut(s) 1069
HincII GTYRAC 2 cut(s) 8, 111
HindII GTYRAC 2 cut(s) 8, 111
HinfI GANTC 3 cut(s) 37, 470, 1016
HpaI GTTAAC 1 cut(s) 111
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 3 cut(s) 8, 111, 138
Hpy188I TCNGA 6 cut(s) 72, 163, 267, 564, 679, 1015
Hpy188III TCNNGA 3 cut(s) 41, 256, 881
Hpy8I GTNNAC 3 cut(s) 8, 111, 138
Hpy99I CGWCG 1 cut(s) 12
HpyAV CCTTC 4 cut(s) 91, 124, 199, 208
HpyCH4III ACNGT 2 cut(s) 371, 993
HpyCH4IV ACGT 4 cut(s) 10, 885, 1110, 1118
HpyF10VI GCNNNNNNNGC 1 cut(s) 603
HpyF3I CTNAG 2 cut(s) 863, 1008
HpySE526I ACGT 4 cut(s) 10, 885, 1110, 1118
Hsp92II CATG 7 cut(s) 363, 460, 639, 793, 878, 1075, 1090
HspAI GCGC 1 cut(s) 1069
Ksp22I TGATCA 2 cut(s) 559, 1060
KspAI GTTAAC 1 cut(s) 111
Kzo9I GATC 5 cut(s) 252, 465, 559, 610, 1060
LmnI GCTCC 2 cut(s) 31, 667
Lsp1109I GCAGC 3 cut(s) 424, 817, 977
LweI GCATC 2 cut(s) 629, 718
MaeI CTAG 3 cut(s) 23, 530, 570
MaeII ACGT 4 cut(s) 10, 885, 1110, 1118
MaeIII GTNAC 1 cut(s) 61
MalI GATC 5 cut(s) 254, 467, 561, 612, 1062
MboI GATC 5 cut(s) 252, 465, 559, 610, 1060
MboII GAAGA 4 cut(s) 85, 166, 218, 356
MhlI GDGCHC 1 cut(s) 692
MluCI AATT 8 cut(s) 200, 241, 415, 429, 574, 614, 723, 1094
MnlI CCTC 9 cut(s) 157, 189, 192, 202, 415, 546, 747, 751, 900
MseI TTAA 5 cut(s) 93, 110, 306, 375, 410
MslI CAYNNNNRTG 1 cut(s) 461
MwoI GCNNNNNNNGC 1 cut(s) 603
NdeI CATATG 1 cut(s) 907
NdeII GATC 5 cut(s) 252, 465, 559, 610, 1060
NheI GCTAGC 1 cut(s) 22
NlaIII CATG 7 cut(s) 363, 460, 639, 793, 878, 1075, 1090
NlaIV GGNNCC 1 cut(s) 177
NmeAIII GCCGAG 1 cut(s) 941
NsbI TGCGCA 1 cut(s) 1070
NspI RCATGY 3 cut(s) 878, 1075, 1090
PfeI GAWTC 3 cut(s) 37, 470, 1016
PkrI GCNGC 3 cut(s) 439, 832, 967
Ppu21I YACGTR 1 cut(s) 1119
PshAI GACNNNNGTC 1 cut(s) 369
PsiI TTATAA 1 cut(s) 684
PspFI CCCAGC 1 cut(s) 606
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 3 cut(s) 175, 391, 639
PsrI GAACNNNNNNTAC 2 cut(s) 565, 597
RsaI GTAC 3 cut(s) 139, 233, 1079
RsaNI GTAC 3 cut(s) 138, 232, 1078
RseI CAYNNNNRTG 1 cut(s) 461
SalI GTCGAC 1 cut(s) 6
SaqAI TTAA 5 cut(s) 93, 110, 306, 375, 410
SatI GCNGC 3 cut(s) 438, 831, 966
Sau3AI GATC 5 cut(s) 252, 465, 559, 610, 1060
Sau96I GGNCC 3 cut(s) 175, 391, 639
SduI GDGCHC 1 cut(s) 692
SfaNI GCATC 2 cut(s) 629, 718
SinI GGWCC 1 cut(s) 391
SmiMI CAYNNNNRTG 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 843
SmoI CTYRAG 1 cut(s) 843
Sse9I AATT 8 cut(s) 200, 241, 415, 429, 574, 614, 723, 1094
SsiI CCGC 1 cut(s) 917
SspMI CTAG 3 cut(s) 23, 530, 570
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 2 cut(s) 371, 993
TaiI ACGT 4 cut(s) 13, 888, 1113, 1121
TaqI TCGA 2 cut(s) 7, 468
TasI AATT 8 cut(s) 200, 241, 415, 429, 574, 614, 723, 1094
TatI WGTACW 2 cut(s) 137, 231
TfiI GAWTC 3 cut(s) 37, 470, 1016
Tru1I TTAA 5 cut(s) 93, 110, 306, 375, 410
Tru9I TTAA 5 cut(s) 93, 110, 306, 375, 410
TscAI CASTG 1 cut(s) 832
TseI GCWGC 3 cut(s) 437, 830, 965
TspDTI ATGAA 7 cut(s) 234, 357, 375, 624, 927, 966, 993
TspRI CASTG 1 cut(s) 832
VpaK11BI GGWCC 1 cut(s) 391
XapI RAATTY 2 cut(s) 200, 429
XceI RCATGY 3 cut(s) 878, 1075, 1090
XmiI GTMKAC 1 cut(s) 7
XspI CTAG 3 cut(s) 23, 530, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.