Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Reverse (-)

58067468 .. 58068631

Gene Structure 1164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26601

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGTTTGGGGTTTTTATTGAGATTTTCAACGGTAGAACAATACGCGGTTTTAGGGTTTCGAATACTTTGTTTCTGGTTCTTCTAGGGTTTGTGTTATACGATCGGAGCTTTTTCAAGGGTTCTTTTTCTTTCTTGGATCAGAATATCATGGGCCGTGGTGGTGGAAAACTGAACATGCAACTCATTGCCGATGAGAGATCTCGCAGAATTACCTTCCAAAAGAGAAAGAAGGGCATTCTCAAGAAAGCTTATGAGTTTTCAACCCTTTGCGGTGTAGATATGTGCTTGATAATCTACGGCCCAAAACAGTCTGATCGGCGACCTACTGAACTCCACACCTGGCCACAAAATCCAGATGAGGTTAATCGCATTATTGGCAAATTTAAGCTCAATAACAAACCAGCCACCAAAACCTACAACTTGTCCGATTGGTTGCATGAGCAAAAGGTCAAGATGGATGCTAAAATCTCCAAACTGAGGAGTGATATGTATGAGGCCAAGTACCCTACATGGGACGACCGCATCAATGATTTTTCAGAACATCAACTGGAAGAGCTTGTACATGTGTTGGATCAAAAGATTGAATCCGGGAAGAGAACACTAAATAATGTGAGGGCACCACCAAAATTGCTGCTAGGTGGAAACCATGTTGCTGATGTAACTAGCCAAAAGCTCTATAATCACATGCAAGATTATGCGCACTACCTTGGTGAGTATGAGGACCAAAAGCCTAGCTATGTGAGTATGATGGATATGCAAATGCCCTTCTCAATTGATCAGCCTACTAGCTATTCTCAAACGCTTCAATATGATTCAGAATTGAATTCGATGATGACTAATCCGTTGATGGGATATCCGAGCACTTACTATGATCCAAGTGGAGCAAGTCAGATGATCCAGTCTCCTGCCGAGAATAATCCGAATATGATGATGTTCAATAGCGTTCCAAGTTCCTCAGTGAGCCACTATGCCCAACTAATACAGAAGCCTATGTCGTACACGCAATACCCGATGAATATTTCGACTATTTCATCACAACTGGGAAATTCTCAAGTAAAAGATCGTGAAGATGATGATCTGATCCATAACAAGATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

366

Amino Acids

42.26

Weight (kDa)

8.26

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	62 - 103	3e-18	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	699
AccB1I	GGYRCC	1 cut(s)	616
AccII	CGCG	1 cut(s)	45
AciI	CCGC	3 cut(s)	45, 270, 520
AclWI	GGATC	5 cut(s)	144, 579, 866, 889, 1075
AcoI	YGGCCR	1 cut(s)	341
AcsI	RAATTY	3 cut(s)	380, 823, 1045
AfaI	GTAC	3 cut(s)	503, 561, 998
AfiI	CCNNNNNNNGG	3 cut(s)	477, 511, 848
AflIII	ACRYGT	1 cut(s)	562
AgsI	TTSAA	7 cut(s)	28, 115, 261, 584, 806, 823, 937
AjnI	CCWGG	1 cut(s)	338
AluBI	AGCT	7 cut(s)	108, 248, 388, 556, 673, 735, 789
AluI	AGCT	7 cut(s)	108, 248, 388, 556, 673, 735, 789
Alw21I	GWGCWC	1 cut(s)	863
Alw26I	GTCTC	1 cut(s)	906
AlwI	GGATC	5 cut(s)	144, 579, 866, 889, 1075
AoxI	GGCC	4 cut(s)	151, 298, 341, 495
ApeKI	GCWGC	1 cut(s)	631
ApoI	RAATTY	3 cut(s)	380, 823, 1045
AspLEI	GCGC	1 cut(s)	700
AspS9I	GGNCC	3 cut(s)	151, 299, 721
AsuC2I	CCSGG	1 cut(s)	589
AsuHPI	GGTGA	1 cut(s)	722
AsuII	TTCGAA	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	721
BaeGI	GKGCMC	1 cut(s)	619
BalI	TGGCCA	1 cut(s)	343
BanI	GGYRCC	1 cut(s)	616
BarI	GAAGNNNNNNTAC	2 cut(s)	543, 575
Bbv12I	GWGCWC	1 cut(s)	863
BbvI	GCAGC	1 cut(s)	618
BccI	CCATC	4 cut(s)	448, 742, 841, 1087
BceAI	ACGGC	2 cut(s)	138, 313
BciT130I	CCWGG	1 cut(s)	340
BclI	TGATCA	1 cut(s)	775
BcnI	CCSGG	1 cut(s)	589
BcoDI	GTCTC	1 cut(s)	906
BfaI	CTAG	5 cut(s)	83, 635, 663, 732, 786
BglII	AGATCT	1 cut(s)	197
BisI	GCNGC	1 cut(s)	632
BlsI	GCNGC	1 cut(s)	633
Bme1390I	CCNGG	2 cut(s)	340, 589
Bme18I	GGWCC	1 cut(s)	721
BmgT120I	GGNCC	3 cut(s)	151, 299, 721
BmiI	GGNNCC	1 cut(s)	618
BmrFI	CCNGG	2 cut(s)	340, 589
BmrI	ACTGGG	1 cut(s)	1049
BmsI	GCATC	2 cut(s)	448, 531
BmuI	ACTGGG	1 cut(s)	1049
Bpu14I	TTCGAA	1 cut(s)	59
BpuEI	CTTGAG	2 cut(s)	224, 1035
BpuMI	CCSGG	1 cut(s)	589
BsaBI	GATNNNNATC	1 cut(s)	1074
BsaJI	CCNNGG	2 cut(s)	154, 706
Bsc4I	CCNNNNNNNGG	3 cut(s)	477, 511, 848
Bse1I	ACTGG	3 cut(s)	552, 898, 1044
Bse3DI	GCAATG	1 cut(s)	183
Bse8I	GATNNNNATC	1 cut(s)	1074
BseBI	CCWGG	1 cut(s)	340
BseDI	CCNNGG	2 cut(s)	154, 706
BseGI	GGATG	1 cut(s)	463
BseJI	GATNNNNATC	1 cut(s)	1074
BseLI	CCNNNNNNNGG	3 cut(s)	477, 511, 848
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	2 cut(s)	467, 969
BseNI	ACTGG	3 cut(s)	552, 898, 1044
BseRI	GAGGAG	1 cut(s)	493
BseSI	GKGCMC	1 cut(s)	619
BseXI	GCAGC	1 cut(s)	618
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	2 cut(s)	103, 520
BshFI	GGCC	4 cut(s)	153, 300, 343, 497
BshNI	GGYRCC	1 cut(s)	616
BsiEI	CGRYCG	2 cut(s)	103, 520
BsiHKAI	GWGCWC	1 cut(s)	863
BsiSI	CCGG	1 cut(s)	588
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	3 cut(s)	477, 511, 848
BsmAI	GTCTC	1 cut(s)	906
BsmFI	GGGAC	1 cut(s)	527
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	4 cut(s)	153, 300, 343, 497
Bsp119I	TTCGAA	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	619, 863
Bsp1407I	TGTACA	1 cut(s)	559
BspACI	CCGC	3 cut(s)	45, 270, 520
BspANI	GGCC	4 cut(s)	153, 300, 343, 497
BspCNI	CTCAG	2 cut(s)	468, 968
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	618
BspPI	GGATC	5 cut(s)	144, 579, 866, 889, 1075
BspQI	GCTCTTC	1 cut(s)	546
BspT104I	TTCGAA	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	616
BsrDI	GCAATG	1 cut(s)	183
BsrGI	TGTACA	1 cut(s)	559
BsrI	ACTGG	3 cut(s)	552, 898, 1044
BssECI	CCNNGG	2 cut(s)	154, 706
BssT1I	CCWWGG	1 cut(s)	706
Bst2UI	CCWGG	1 cut(s)	340
Bst4CI	ACNGT	2 cut(s)	32, 309
Bst6I	CTCTTC	2 cut(s)	546, 587
BstAUI	TGTACA	1 cut(s)	559
BstBI	TTCGAA	1 cut(s)	59
BstDEI	CTNAG	2 cut(s)	476, 955
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	1 cut(s)	463
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	700
BstMAI	GTCTC	1 cut(s)	906
BstMCI	CGRYCG	2 cut(s)	103, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	375
BstNI	CCWGG	1 cut(s)	340
BstNSI	RCATGY	3 cut(s)	178, 566, 688
BstSCI	CCNGG	2 cut(s)	338, 587
BstSLI	GKGCMC	1 cut(s)	619
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	618
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BsuRI	GGCC	4 cut(s)	153, 300, 343, 497
BtgI	CCRYGG	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	963
CfoI	GCGC	1 cut(s)	700
Cfr13I	GGNCC	3 cut(s)	151, 299, 721
Csp6I	GTAC	3 cut(s)	502, 560, 997
CspCI	CAANNNNNGTGG	2 cut(s)	609, 644
CviAII	CATG	7 cut(s)	148, 175, 437, 510, 563, 647, 685
CviQI	GTAC	3 cut(s)	502, 560, 997
DdeI	CTNAG	2 cut(s)	476, 955
EaeI	YGGCCR	1 cut(s)	341
Eam1104I	CTCTTC	2 cut(s)	546, 587
EarI	CTCTTC	2 cut(s)	546, 587
Eco130I	CCWWGG	1 cut(s)	706
Eco32I	GATATC	1 cut(s)	854
Eco47I	GGWCC	1 cut(s)	721
EcoRI	GAATTC	1 cut(s)	823
EcoRII	CCWGG	1 cut(s)	338
EcoRV	GATATC	1 cut(s)	854
EcoT14I	CCWWGG	1 cut(s)	706
ErhI	CCWWGG	1 cut(s)	706
FaeI	CATG	7 cut(s)	151, 178, 440, 513, 566, 650, 688
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	7 cut(s)	147, 174, 436, 509, 562, 646, 684
FbaI	TGATCA	1 cut(s)	775
Fnu4HI	GCNGC	1 cut(s)	632
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	1 cut(s)	632
FspAI	RTGCGCAY	1 cut(s)	699
FspBI	CTAG	5 cut(s)	83, 635, 663, 732, 786
FspI	TGCGCA	1 cut(s)	699
GlaI	GCGC	1 cut(s)	699
GluI	GCNGC	1 cut(s)	632
HaeIII	GGCC	4 cut(s)	153, 300, 343, 497
HapII	CCGG	1 cut(s)	588
HhaI	GCGC	1 cut(s)	700
Hin1II	CATG	7 cut(s)	151, 178, 440, 513, 566, 650, 688
Hin6I	GCGC	1 cut(s)	698
HinP1I	GCGC	1 cut(s)	698
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	2 cut(s)	584, 812
HpaII	CCGG	1 cut(s)	588
HphI	GGTGA	1 cut(s)	722
Hpy166II	GTNNAC	1 cut(s)	999
Hpy188III	TCNNGA	4 cut(s)	241, 353, 451, 1064
Hpy8I	GTNNAC	1 cut(s)	999
HpyAV	CCTTC	3 cut(s)	223, 223, 775
HpyCH4III	ACNGT	2 cut(s)	32, 309
HpyCH4V	TGCA	4 cut(s)	178, 436, 688, 757
HpyF10VI	GCNNNNNNNGC	1 cut(s)	375
HpyF3I	CTNAG	2 cut(s)	476, 955
Hsp92II	CATG	7 cut(s)	151, 178, 440, 513, 566, 650, 688
HspAI	GCGC	1 cut(s)	698
Ksp22I	TGATCA	1 cut(s)	775
LguI	GCTCTTC	1 cut(s)	546
LmnI	GCTCC	2 cut(s)	105, 881
Lsp1109I	GCAGC	1 cut(s)	618
LweI	GCATC	2 cut(s)	448, 531
MaeI	CTAG	5 cut(s)	83, 635, 663, 732, 786
MaeIII	GTNAC	1 cut(s)	658
MboII	GAAGA	4 cut(s)	71, 563, 604, 1079
MfeI	CAATTG	1 cut(s)	771
MflI	RGATCY	1 cut(s)	197
MhlI	GDGCHC	2 cut(s)	619, 863
MlsI	TGGCCA	1 cut(s)	343
MluCI	AATT	7 cut(s)	207, 380, 626, 771, 818, 823, 1045
MluNI	TGGCCA	1 cut(s)	343
MmeI	TCCRAC	1 cut(s)	549
MnlI	CCTC	6 cut(s)	352, 471, 487, 606, 712, 964
Mox20I	TGGCCA	1 cut(s)	343
MscI	TGGCCA	1 cut(s)	343
MseI	TTAA	2 cut(s)	363, 384
Msp20I	TGGCCA	1 cut(s)	343
MspI	CCGG	1 cut(s)	588
MspR9I	CCNGG	2 cut(s)	340, 589
MunI	CAATTG	1 cut(s)	771
Mva1269I	GAATGC	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	340
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	375
NciI	CCSGG	1 cut(s)	589
NlaIII	CATG	7 cut(s)	151, 178, 440, 513, 566, 650, 688
NlaIV	GGNNCC	1 cut(s)	618
NmeAIII	GCCGAG	1 cut(s)	934
NsbI	TGCGCA	1 cut(s)	699
NspI	RCATGY	3 cut(s)	178, 566, 688
NspV	TTCGAA	1 cut(s)	59
PciI	ACATGT	1 cut(s)	562
PciSI	GCTCTTC	1 cut(s)	546
PcsI	WCGNNNNNNNCGW	1 cut(s)	1007
PctI	GAATGC	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	584, 812
PfoI	TCCNGGA	1 cut(s)	587
PkrI	GCNGC	1 cut(s)	633
Ple19I	CGATCG	1 cut(s)	103
PscI	ACATGT	1 cut(s)	562
Psp6I	CCWGG	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	618
PspPI	GGNCC	3 cut(s)	151, 299, 721
PsuI	RGATCY	1 cut(s)	197
PvuI	CGATCG	1 cut(s)	103
RsaI	GTAC	3 cut(s)	503, 561, 998
RsaNI	GTAC	3 cut(s)	502, 560, 997
SapI	GCTCTTC	1 cut(s)	546
SaqAI	TTAA	2 cut(s)	363, 384
SatI	GCNGC	1 cut(s)	632
Sau96I	GGNCC	3 cut(s)	151, 299, 721
ScrFI	CCNGG	2 cut(s)	340, 589
SduI	GDGCHC	2 cut(s)	619, 863
SfaNI	GCATC	2 cut(s)	448, 531
SfuI	TTCGAA	1 cut(s)	59
SinI	GGWCC	1 cut(s)	721
SmlI	CTYRAG	2 cut(s)	239, 1050
SmoI	CTYRAG	2 cut(s)	239, 1050
Sse9I	AATT	7 cut(s)	207, 380, 626, 771, 818, 823, 1045
SsiI	CCGC	3 cut(s)	45, 270, 520
SspI	AATATT	1 cut(s)	1018
SspMI	CTAG	5 cut(s)	83, 635, 663, 732, 786
StyD4I	CCNGG	2 cut(s)	338, 587
StyI	CCWWGG	1 cut(s)	706
TaaI	ACNGT	2 cut(s)	32, 309
TaqI	TCGA	3 cut(s)	59, 827, 1022
TasI	AATT	7 cut(s)	207, 380, 626, 771, 818, 823, 1045
TatI	WGTACW	1 cut(s)	559
TfiI	GAWTC	2 cut(s)	584, 812
Tru1I	TTAA	2 cut(s)	363, 384
Tru9I	TTAA	2 cut(s)	363, 384
TscAI	CASTG	1 cut(s)	963
TseI	GCWGC	1 cut(s)	631
TspDTI	ATGAA	2 cut(s)	1020, 1028
TspGWI	ACGGA	1 cut(s)	831
TspRI	CASTG	1 cut(s)	963
VpaK11BI	GGWCC	1 cut(s)	721
XapI	RAATTY	3 cut(s)	380, 823, 1045
XceI	RCATGY	3 cut(s)	178, 566, 688
XspI	CTAG	5 cut(s)	83, 635, 663, 732, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.