Rw2G054520
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000326
Physical Location & Seq
Forward (+)
82137618 .. 82138809
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G054520.1

Sequence Viewer

Length: 723 bp
ATGGGTCGAAGTAATACAAAGTTGCCTTTGGAACTAATAAAGAATGAGAAGTCTCGCAATGTCACTTTTCGAAAGAGGAAGAAGGGATTGATGAAGAAGACGTATGAATTGAACAAGCTTTGTGATGTGCAGTGTTCTGTTATCATTTATGAGAACAAAAACGGCCAACTGGTCCGGCCGGATACCTATCCTGAAAACCCTGAAGAGGTCAAGCAAATTATTGATAGATTTGTCTCCAAATCAGCCAAAGTAAGGAAAGTTGAAAACTTGGCTGATTTTTTCAGCAAACAAATCATGCAAGTGAAGAAAGAGACTGCCAAATTGCGCCAAAAGAACAATGAAGCTCGGTTTCCTTCATGGGATGACAGGTTAGATGACTTCTCATTAGATCAATTGCTTGCTCTTTTGAAAAAACTGGAGCACAAAATCGAAGACGTGCACAAGCATTATGATAAGCAATATGCTATTGATGACAGTATACTACAACAAACGGTGTGCATGCCATGGCAGAACTACAACATTCAGAGTGCTCCATCAGCATCAAACGGATCAAATTACGACGAACAAAGTACATCTATGAAGTGTGAAAATCGTCTGCAATACGGAAACATCGATGAAAATTTGACATTATGTAATCACGTCCCACCACAACAGACTGTGTATCCAATGTCCGCAAGTTATTTGTTTGATAATGCAAACCAATTCTTGCATCTCAAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

240

Amino Acids

28.03

Weight (kDa)

8.92

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 13 - 57 1.3e-16 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 478
AciI CCGC 1 cut(s) 672
AclWI GGATC 1 cut(s) 556
AcoI YGGCCR 2 cut(s) 163, 176
AcsI RAATTY 1 cut(s) 619
AcuI CTGAAG 1 cut(s) 222
AfaI GTAC 1 cut(s) 571
AfiI CCNNNNNNNGG 2 cut(s) 205, 252
AgsI TTSAA 3 cut(s) 112, 263, 409
AjiI CACGTC 2 cut(s) 436, 640
AluBI AGCT 2 cut(s) 118, 344
AluI AGCT 2 cut(s) 118, 344
Alw21I GWGCWC 3 cut(s) 423, 441, 532
Alw26I GTCTC 3 cut(s) 57, 238, 305
Alw44I GTGCAC 1 cut(s) 437
AlwI GGATC 1 cut(s) 556
AoxI GGCC 2 cut(s) 163, 176
ApaLI GTGCAC 1 cut(s) 437
ApoI RAATTY 1 cut(s) 619
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 172
AsuII TTCGAA 1 cut(s) 70
AvaII GGWCC 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 441
BbsI GAAGAC 2 cut(s) 104, 438
Bbv12I GWGCWC 3 cut(s) 423, 441, 532
BccI CCATC 1 cut(s) 541
BceAI ACGGC 1 cut(s) 178
BciVI GTATCC 2 cut(s) 175, 672
BcoDI GTCTC 3 cut(s) 57, 238, 305
BfaI CTAG 1 cut(s) 721
BfuI GTATCC 2 cut(s) 175, 672
Bme18I GGWCC 1 cut(s) 172
BmgBI CACGTC 2 cut(s) 436, 640
BmgT120I GGNCC 1 cut(s) 172
BmsI GCATC 2 cut(s) 548, 718
BpiI GAAGAC 2 cut(s) 104, 438
BpmI CTGGAG 1 cut(s) 437
Bpu14I TTCGAA 1 cut(s) 70
Bsa29I ATCGAT 1 cut(s) 612
BsaBI GATNNNNATC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 503
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 252
Bse1I ACTGG 2 cut(s) 174, 420
Bse3DI GCAATG 1 cut(s) 64
Bse8I GATNNNNATC 1 cut(s) 186
BseCI ATCGAT 1 cut(s) 612
BseDI CCNNGG 1 cut(s) 503
BseGI GGATG 1 cut(s) 367
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 2 cut(s) 205, 252
BseMI GCAATG 1 cut(s) 64
BseNI ACTGG 2 cut(s) 174, 420
BseSI GKGCMC 1 cut(s) 441
BseX3I CGGCCG 1 cut(s) 176
BsgI GTGCAG 1 cut(s) 149
Bsh1285I CGRYCG 1 cut(s) 179
BshFI GGCC 2 cut(s) 165, 178
BshVI ATCGAT 1 cut(s) 612
BsiEI CGRYCG 1 cut(s) 179
BsiHKAI GWGCWC 3 cut(s) 423, 441, 532
BsiSI CCGG 2 cut(s) 175, 179
BslFI GGGAC 1 cut(s) 626
BslI CCNNNNNNNGG 2 cut(s) 205, 252
BsmAI GTCTC 3 cut(s) 57, 238, 305
BsmFI GGGAC 1 cut(s) 626
BsnI GGCC 2 cut(s) 165, 178
Bsp119I TTCGAA 1 cut(s) 70
Bsp1286I GDGCHC 3 cut(s) 423, 441, 532
Bsp143I GATC 2 cut(s) 388, 548
Bsp19I CCATGG 1 cut(s) 503
BspACI CCGC 1 cut(s) 672
BspANI GGCC 2 cut(s) 165, 178
BspDI ATCGAT 1 cut(s) 612
BspPI GGATC 1 cut(s) 556
BspT104I TTCGAA 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 64
BsrI ACTGG 2 cut(s) 174, 420
BssECI CCNNGG 1 cut(s) 503
BssMI GATC 2 cut(s) 388, 548
BssNAI GTATAC 1 cut(s) 479
BssT1I CCWWGG 1 cut(s) 503
Bst1107I GTATAC 1 cut(s) 479
Bst4CI ACNGT 3 cut(s) 476, 493, 658
Bst6I CTCTTC 1 cut(s) 198
BstBI TTCGAA 1 cut(s) 70
BstC8I GCNNGC 2 cut(s) 399, 500
BstDSI CCRYGG 1 cut(s) 503
BstF5I GGATG 1 cut(s) 367
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 2 cut(s) 391, 551
BstMAI GTCTC 3 cut(s) 57, 238, 305
BstMBI GATC 2 cut(s) 388, 548
BstMCI CGRYCG 1 cut(s) 179
BstMWI GCNNNNNNNGC 1 cut(s) 536
BstNSI RCATGY 1 cut(s) 502
BstSLI GKGCMC 1 cut(s) 441
BstV2I GAAGAC 2 cut(s) 104, 438
BstZ17I GTATAC 1 cut(s) 479
BstZI CGGCCG 1 cut(s) 176
Bsu15I ATCGAT 1 cut(s) 612
BsuI GTATCC 2 cut(s) 175, 672
BsuRI GGCC 2 cut(s) 165, 178
BsuTUI ATCGAT 1 cut(s) 612
BtgI CCRYGG 1 cut(s) 503
BtrI CACGTC 2 cut(s) 436, 640
BtsCI GGATG 1 cut(s) 367
BtsI GCAGTG 1 cut(s) 137
BtsIMutI CAGTG 1 cut(s) 137
Cac8I GCNNGC 2 cut(s) 399, 500
CfoI GCGC 1 cut(s) 327
Cfr13I GGNCC 1 cut(s) 172
ClaI ATCGAT 1 cut(s) 612
Csp6I GTAC 1 cut(s) 570
CviAII CATG 4 cut(s) 295, 357, 499, 504
CviJI RGCY 7 cut(s) 118, 165, 178, 245, 272, 344, 720
CviKI_1 RGCY 7 cut(s) 118, 165, 178, 245, 272, 344, 720
CviQI GTAC 1 cut(s) 570
DpnI GATC 2 cut(s) 390, 550
DpnII GATC 2 cut(s) 388, 548
EaeI YGGCCR 2 cut(s) 163, 176
EagI CGGCCG 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
EclXI CGGCCG 1 cut(s) 176
Eco130I CCWWGG 1 cut(s) 503
Eco47I GGWCC 1 cut(s) 172
Eco52I CGGCCG 1 cut(s) 176
Eco57I CTGAAG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 503
ErhI CCWWGG 1 cut(s) 503
FaeI CATG 4 cut(s) 298, 360, 502, 507
FaqI GGGAC 1 cut(s) 626
FatI CATG 4 cut(s) 294, 356, 498, 503
FblI GTMKAC 1 cut(s) 478
FokI GGATG 1 cut(s) 374
FspBI CTAG 1 cut(s) 721
GlaI GCGC 1 cut(s) 326
GsuI CTGGAG 1 cut(s) 437
HaeIII GGCC 2 cut(s) 165, 178
HapII CCGG 2 cut(s) 175, 179
HhaI GCGC 1 cut(s) 327
Hin1II CATG 4 cut(s) 298, 360, 502, 507
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 116
HpaII CCGG 2 cut(s) 175, 179
Hpy166II GTNNAC 2 cut(s) 439, 479
Hpy188I TCNGA 1 cut(s) 525
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 2 cut(s) 439, 479
Hpy99I CGWCG 1 cut(s) 563
HpyAV CCTTC 2 cut(s) 76, 363
HpyCH4III ACNGT 3 cut(s) 476, 493, 658
HpyCH4IV ACGT 3 cut(s) 101, 435, 639
HpyCH4V TGCA 7 cut(s) 130, 298, 439, 498, 598, 695, 709
HpyF10VI GCNNNNNNNGC 1 cut(s) 536
HpySE526I ACGT 3 cut(s) 101, 435, 639
Hsp92II CATG 4 cut(s) 298, 360, 502, 507
HspAI GCGC 1 cut(s) 325
Kzo9I GATC 2 cut(s) 388, 548
LmnI GCTCC 2 cut(s) 418, 535
LpnPI CCDG 7 cut(s) 155, 188, 192, 204, 213, 352, 401
LweI GCATC 2 cut(s) 548, 718
MaeI CTAG 1 cut(s) 721
MaeII ACGT 3 cut(s) 101, 435, 639
MaeIII GTNAC 1 cut(s) 61
MalI GATC 2 cut(s) 390, 550
MboI GATC 2 cut(s) 388, 548
MboII GAAGA 6 cut(s) 91, 106, 109, 215, 316, 443
MfeI CAATTG 1 cut(s) 392
MhlI GDGCHC 3 cut(s) 423, 441, 532
MluCI AATT 7 cut(s) 107, 216, 320, 392, 553, 619, 701
MnlI CCTC 2 cut(s) 69, 199
MslI CAYNNNNRTG 1 cut(s) 299
MspI CCGG 2 cut(s) 175, 179
MunI CAATTG 1 cut(s) 392
MwoI GCNNNNNNNGC 1 cut(s) 536
NcoI CCATGG 1 cut(s) 503
NdeII GATC 2 cut(s) 388, 548
NlaIII CATG 4 cut(s) 298, 360, 502, 507
NmuCI GTSAC 1 cut(s) 61
NspI RCATGY 1 cut(s) 502
NspV TTCGAA 1 cut(s) 70
PaeI GCATGC 1 cut(s) 502
PcsI WCGNNNNNNNCGW 1 cut(s) 609
PspPI GGNCC 1 cut(s) 172
RsaI GTAC 1 cut(s) 571
RsaNI GTAC 1 cut(s) 570
RseI CAYNNNNRTG 1 cut(s) 299
Sau3AI GATC 2 cut(s) 388, 548
Sau96I GGNCC 1 cut(s) 172
SduI GDGCHC 3 cut(s) 423, 441, 532
SetI ASST 8 cut(s) 104, 120, 188, 210, 346, 371, 438, 642
SfaNI GCATC 2 cut(s) 548, 718
SfuI TTCGAA 1 cut(s) 70
SinI GGWCC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 299
SphI GCATGC 1 cut(s) 502
Sse9I AATT 7 cut(s) 107, 216, 320, 392, 553, 619, 701
SsiI CCGC 1 cut(s) 672
SspMI CTAG 1 cut(s) 721
StyI CCWWGG 1 cut(s) 503
TaaI ACNGT 3 cut(s) 476, 493, 658
TaiI ACGT 3 cut(s) 104, 438, 642
TaqI TCGA 4 cut(s) 7, 70, 429, 612
TasI AATT 7 cut(s) 107, 216, 320, 392, 553, 619, 701
TatI WGTACW 1 cut(s) 569
TscAI CASTG 1 cut(s) 137
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 6 cut(s) 107, 120, 345, 354, 593, 630
TspGWI ACGGA 2 cut(s) 561, 618
TspRI CASTG 1 cut(s) 137
VneI GTGCAC 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 172
XapI RAATTY 1 cut(s) 619
XceI RCATGY 1 cut(s) 502
XmiI GTMKAC 1 cut(s) 478
XspI CTAG 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.