Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Forward (+)

11914548 .. 11915501

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00171600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGCCGTGGTGGTGGAAAACTGAATATGCAACTCATTGCCGATGAGAGATCTCGCAGAATTACGTTCCAAAAGAGAAAGAAGGGCATTCTCAAGAAAGCTTATGAGTTTTCAACCCTTTGTGGTGTAGATATGTGCTTGATAATCTACGGCCCAAAACAGTCTGATCGGCGACCTGCTGAACTCCACACCTGGCCACAAAACCCAGATGAGGTTAATCGCATTATTGAAAAATTTAAGCTCAATAACAAACCAGCCACCAAAACCTACAACTTGTCCGATTGGTTGCATGAGCAAAAGGTCAAGATGGATGCTAAAATCTCCAAACTGAGGAGTGATATGTATGAGGCCAAGTACCCTACATGGGACGACCGCATCAATGATTTTTCAGAACATCAACTGGAAGAGCTTGTACATGTGTTGGATCAAAAGATTGAATCCGGGAAGAGAACACTAAATAATGTGAGGGCACCACCAAAATTGCTGCTAGGTGGAAACCATGTTGCTGATGTAACTAGCCAAAAGCTCTCTGATCACATGCAAGATTATGCGCACTACCTTGGTGAGTATGAGGACCAAAAGCCTAGCTATGTGAGTATGATGGATATGCAAATGCCCTTCTCAATTGATCAGCCTACTAGCTATTCCCAAACGCTTCAATATGATTCAGATTTGAATTCGATGATGACTAATCCGTTGATGGGATATCCGAGCACTTACTATGATCCAAGTGGAGCAAGTCAGATGATCCAGTCTCCTGCCGAGAATAATCAGAATATGATGATGTTCAATAGCGTTCCAAGTTCCTCAGTGAGCCACTATGCCCAACTAATACAGAAGCCTATGTCGTACACTCAATACCCGATGAATATTTCGAGTATTTCATCACAACTGGGAACTTCTCAAGTCAAAGATCGTGAAGACGATGATCTGATCCATAACAAGATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

317

Amino Acids

36.51

Weight (kDa)

6.51

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	13 - 54	2.6e-18	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	552
Acc36I	ACCTGC	1 cut(s)	184
AccB1I	GGYRCC	1 cut(s)	469
AciI	CCGC	1 cut(s)	373
AclWI	GGATC	4 cut(s)	432, 719, 742, 928
AcoI	YGGCCR	1 cut(s)	194
AcsI	RAATTY	2 cut(s)	233, 676
AfaI	GTAC	3 cut(s)	356, 414, 851
AfiI	CCNNNNNNNGG	4 cut(s)	211, 330, 364, 701
AflIII	ACRYGT	1 cut(s)	415
AgsI	TTSAA	6 cut(s)	114, 230, 437, 659, 676, 790
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	6 cut(s)	101, 241, 409, 526, 588, 642
AluI	AGCT	6 cut(s)	101, 241, 409, 526, 588, 642
Alw21I	GWGCWC	1 cut(s)	716
Alw26I	GTCTC	1 cut(s)	759
AlwI	GGATC	4 cut(s)	432, 719, 742, 928
AoxI	GGCC	4 cut(s)	4, 151, 194, 348
ApeKI	GCWGC	1 cut(s)	484
ApoI	RAATTY	2 cut(s)	233, 676
AspLEI	GCGC	1 cut(s)	553
AspS9I	GGNCC	3 cut(s)	4, 152, 574
AsuC2I	CCSGG	1 cut(s)	442
AsuHPI	GGTGA	1 cut(s)	575
AvaII	GGWCC	1 cut(s)	574
BaeGI	GKGCMC	1 cut(s)	472
BalI	TGGCCA	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	469
BarI	GAAGNNNNNNTAC	2 cut(s)	396, 428
BbsI	GAAGAC	1 cut(s)	927
Bbv12I	GWGCWC	1 cut(s)	716
BbvI	GCAGC	1 cut(s)	471
BccI	CCATC	4 cut(s)	301, 595, 694, 940
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	193
BclI	TGATCA	2 cut(s)	532, 628
BcnI	CCSGG	1 cut(s)	442
BcoDI	GTCTC	1 cut(s)	759
BfaI	CTAG	4 cut(s)	488, 516, 585, 639
BfuAI	ACCTGC	1 cut(s)	184
BglII	AGATCT	1 cut(s)	50
BisI	GCNGC	1 cut(s)	485
BlsI	GCNGC	1 cut(s)	486
Bme1390I	CCNGG	2 cut(s)	193, 442
Bme18I	GGWCC	1 cut(s)	574
BmgT120I	GGNCC	3 cut(s)	4, 152, 574
BmiI	GGNNCC	1 cut(s)	471
BmrFI	CCNGG	2 cut(s)	193, 442
BmrI	ACTGGG	1 cut(s)	902
BmsI	GCATC	2 cut(s)	301, 384
BmuI	ACTGGG	1 cut(s)	902
BpiI	GAAGAC	1 cut(s)	927
BpuEI	CTTGAG	2 cut(s)	77, 888
BpuMI	CCSGG	1 cut(s)	442
BsaJI	CCNNGG	2 cut(s)	7, 559
Bsc4I	CCNNNNNNNGG	4 cut(s)	211, 330, 364, 701
Bse1I	ACTGG	3 cut(s)	405, 751, 897
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	2 cut(s)	7, 559
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	4 cut(s)	211, 330, 364, 701
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	320, 822
BseNI	ACTGG	3 cut(s)	405, 751, 897
BseRI	GAGGAG	1 cut(s)	346
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	1 cut(s)	471
Bsh1285I	CGRYCG	1 cut(s)	373
BshFI	GGCC	4 cut(s)	6, 153, 196, 350
BshNI	GGYRCC	1 cut(s)	469
BsiEI	CGRYCG	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	716
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	4 cut(s)	211, 330, 364, 701
BsmAI	GTCTC	1 cut(s)	759
BsmFI	GGGAC	1 cut(s)	380
BsmI	GAATGC	1 cut(s)	87
BsnI	GGCC	4 cut(s)	6, 153, 196, 350
Bsp1286I	GDGCHC	2 cut(s)	472, 716
Bsp1407I	TGTACA	1 cut(s)	412
BspACI	CCGC	1 cut(s)	373
BspANI	GGCC	4 cut(s)	6, 153, 196, 350
BspCNI	CTCAG	2 cut(s)	321, 821
BspLI	GGNNCC	1 cut(s)	471
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	4 cut(s)	432, 719, 742, 928
BspQI	GCTCTTC	1 cut(s)	399
BspT107I	GGYRCC	1 cut(s)	469
BsrDI	GCAATG	1 cut(s)	36
BsrGI	TGTACA	1 cut(s)	412
BsrI	ACTGG	3 cut(s)	405, 751, 897
BssECI	CCNNGG	2 cut(s)	7, 559
BssT1I	CCWWGG	1 cut(s)	559
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	1 cut(s)	162
Bst6I	CTCTTC	2 cut(s)	399, 440
BstAUI	TGTACA	1 cut(s)	412
BstDEI	CTNAG	2 cut(s)	329, 808
BstDSI	CCRYGG	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	553
BstMAI	GTCTC	1 cut(s)	759
BstMCI	CGRYCG	1 cut(s)	373
BstNI	CCWGG	1 cut(s)	193
BstNSI	RCATGY	2 cut(s)	419, 541
BstSCI	CCNGG	2 cut(s)	191, 440
BstSLI	GKGCMC	1 cut(s)	472
BstV1I	GCAGC	1 cut(s)	471
BstV2I	GAAGAC	1 cut(s)	927
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BsuRI	GGCC	4 cut(s)	6, 153, 196, 350
BtgI	CCRYGG	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	816
BveI	ACCTGC	1 cut(s)	184
CfoI	GCGC	1 cut(s)	553
Cfr13I	GGNCC	3 cut(s)	4, 152, 574
Csp6I	GTAC	3 cut(s)	355, 413, 850
CspCI	CAANNNNNGTGG	2 cut(s)	462, 497
CviAII	CATG	5 cut(s)	290, 363, 416, 500, 538
CviQI	GTAC	3 cut(s)	355, 413, 850
DdeI	CTNAG	2 cut(s)	329, 808
EaeI	YGGCCR	1 cut(s)	194
Eam1104I	CTCTTC	2 cut(s)	399, 440
EarI	CTCTTC	2 cut(s)	399, 440
Eco130I	CCWWGG	1 cut(s)	559
Eco32I	GATATC	1 cut(s)	707
Eco47I	GGWCC	1 cut(s)	574
EcoRI	GAATTC	1 cut(s)	676
EcoRII	CCWGG	1 cut(s)	191
EcoRV	GATATC	1 cut(s)	707
EcoT14I	CCWWGG	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	559
FaeI	CATG	5 cut(s)	293, 366, 419, 503, 541
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	5 cut(s)	289, 362, 415, 499, 537
FbaI	TGATCA	2 cut(s)	532, 628
Fnu4HI	GCNGC	1 cut(s)	485
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	485
FspAI	RTGCGCAY	1 cut(s)	552
FspBI	CTAG	4 cut(s)	488, 516, 585, 639
FspI	TGCGCA	1 cut(s)	552
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	1 cut(s)	485
HaeIII	GGCC	4 cut(s)	6, 153, 196, 350
HapII	CCGG	1 cut(s)	441
HhaI	GCGC	1 cut(s)	553
Hin1II	CATG	5 cut(s)	293, 366, 419, 503, 541
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	2 cut(s)	437, 665
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	1 cut(s)	575
Hpy166II	GTNNAC	1 cut(s)	852
Hpy188I	TCNGA	9 cut(s)	166, 280, 391, 532, 670, 711, 744, 774, 933
Hpy188III	TCNNGA	3 cut(s)	94, 304, 917
Hpy8I	GTNNAC	1 cut(s)	852
HpyAV	CCTTC	2 cut(s)	76, 628
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	4 cut(s)	31, 289, 541, 610
HpyF3I	CTNAG	2 cut(s)	329, 808
HpySE526I	ACGT	1 cut(s)	65
Hsp92II	CATG	5 cut(s)	293, 366, 419, 503, 541
HspAI	GCGC	1 cut(s)	551
Ksp22I	TGATCA	2 cut(s)	532, 628
LguI	GCTCTTC	1 cut(s)	399
LmnI	GCTCC	1 cut(s)	734
Lsp1109I	GCAGC	1 cut(s)	471
LweI	GCATC	2 cut(s)	301, 384
MaeI	CTAG	4 cut(s)	488, 516, 585, 639
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	511
MboII	GAAGA	3 cut(s)	416, 457, 932
MfeI	CAATTG	1 cut(s)	624
MflI	RGATCY	1 cut(s)	50
MhlI	GDGCHC	2 cut(s)	472, 716
MlsI	TGGCCA	1 cut(s)	196
MluCI	AATT	5 cut(s)	60, 233, 479, 624, 676
MluNI	TGGCCA	1 cut(s)	196
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	6 cut(s)	205, 324, 340, 459, 565, 817
Mox20I	TGGCCA	1 cut(s)	196
MscI	TGGCCA	1 cut(s)	196
MseI	TTAA	2 cut(s)	216, 237
Msp20I	TGGCCA	1 cut(s)	196
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	2 cut(s)	193, 442
MunI	CAATTG	1 cut(s)	624
Mva1269I	GAATGC	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	193
NciI	CCSGG	1 cut(s)	442
NlaIII	CATG	5 cut(s)	293, 366, 419, 503, 541
NlaIV	GGNNCC	1 cut(s)	471
NmeAIII	GCCGAG	1 cut(s)	787
NsbI	TGCGCA	1 cut(s)	552
NspI	RCATGY	2 cut(s)	419, 541
PciI	ACATGT	1 cut(s)	415
PciSI	GCTCTTC	1 cut(s)	399
PctI	GAATGC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	437, 665
PfoI	TCCNGGA	1 cut(s)	440
PkrI	GCNGC	1 cut(s)	486
PscI	ACATGT	1 cut(s)	415
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	471
PspPI	GGNCC	3 cut(s)	4, 152, 574
PsuI	RGATCY	1 cut(s)	50
RsaI	GTAC	3 cut(s)	356, 414, 851
RsaNI	GTAC	3 cut(s)	355, 413, 850
SapI	GCTCTTC	1 cut(s)	399
SaqAI	TTAA	2 cut(s)	216, 237
SatI	GCNGC	1 cut(s)	485
Sau96I	GGNCC	3 cut(s)	4, 152, 574
ScrFI	CCNGG	2 cut(s)	193, 442
SduI	GDGCHC	2 cut(s)	472, 716
SfaNI	GCATC	2 cut(s)	301, 384
SinI	GGWCC	1 cut(s)	574
SmlI	CTYRAG	2 cut(s)	92, 903
SmoI	CTYRAG	2 cut(s)	92, 903
Sse9I	AATT	5 cut(s)	60, 233, 479, 624, 676
SsiI	CCGC	1 cut(s)	373
SspI	AATATT	1 cut(s)	871
SspMI	CTAG	4 cut(s)	488, 516, 585, 639
StyD4I	CCNGG	2 cut(s)	191, 440
StyI	CCWWGG	1 cut(s)	559
TaaI	ACNGT	1 cut(s)	162
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	2 cut(s)	680, 875
TasI	AATT	5 cut(s)	60, 233, 479, 624, 676
TatI	WGTACW	1 cut(s)	412
TfiI	GAWTC	2 cut(s)	437, 665
Tru1I	TTAA	2 cut(s)	216, 237
Tru9I	TTAA	2 cut(s)	216, 237
TscAI	CASTG	1 cut(s)	816
TseI	GCWGC	1 cut(s)	484
TspDTI	ATGAA	2 cut(s)	873, 881
TspGWI	ACGGA	1 cut(s)	684
TspRI	CASTG	1 cut(s)	816
VpaK11BI	GGWCC	1 cut(s)	574
XapI	RAATTY	2 cut(s)	233, 676
XceI	RCATGY	2 cut(s)	419, 541
XspI	CTAG	4 cut(s)	488, 516, 585, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.