Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Forward (+)

6849578 .. 6850567

Gene Structure 990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G11250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAAGCAAGCTTCTTCTTCTTCGTCATGTAATCCAACAAGTTTAACAAACAGACTTAAAACAATCTTTAAGAAAGCAGAAGAGCTTTCGATTCTCTGTGCTATTGACGTTTGCGTCATCTATTACGGACCAGACGGTGATCTGAGAACATGGCCTAAGGATAGAGAGACAGTGAAAAATATGGCTTTGAGGTATAAAGAGGACAGAAAACGCAAGAAGTGCCTCAATCTTCATGAGTTCCTCGAGAAAGAGAAGGTGAAGGACAAAGACAAGTATAAGGGGAAGACGAATTATGTGAAGAACCCTAATTGGTATCCAAACTTTGATCATTACTCTCCTCAACAACTCTCTCAATTGATTCAGTCCTTAGAACGAACACTTTCTACTCTCCAAAAAAGGCTTCGTATTGTTGAGTCGCAGAAAAAACAGAACACAAACTTGGTGCATCAGAGTTTAACACCATCGTATCTGAACCAGACACAACACTTGGATCCTAGCAAGTTCTCGCTGTATATGTACAACCATGGAGATGCTACTCTCTCACAACTCCCACTGTCTGCTTCACAATCCAATCAACTCATCAATTACCAGATGCAGCATGGTTTTGGTCAGAACATGTGTTTGGACAACATCACCAACAACAACAACTTTCAACATCCTGGCGTGTCAAACACACAAGACTACTCACCGTTACTTTCGGCGAATAACTACGGGTTGAATAATCACTTGATGCAGCAACAGGATCAGCTTCATGGTTTTGATCAGAACTTGTGTATGATGAGTGAAATCATCAATAACAACAACGGTTTACAACATCCTAATCTCTCAAACACTGTTCCACATGAATTCCCTTATGGTAACACTAGCTTCTCTCAAGATATGTTTTCGAGCTATGATGGGAGCAGTTTGCTACAGACATCTTCTCTGCCACCTCTCCACAACATTCCTAACAGCTATTGTTTTTCTGACAACTCAAGACTTCTCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

329

Amino Acids

37.83

Weight (kDa)

8.5

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 51	1.3e-13	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
AclWI	GGATC	3 cut(s)	485, 498, 750
AcsI	RAATTY	1 cut(s)	845
AfaI	GTAC	1 cut(s)	518
AflIII	ACRYGT	1 cut(s)	615
AgsI	TTSAA	2 cut(s)	653, 718
AjnI	CCWGG	1 cut(s)	658
AjuI	GAANNNNNNNTTGG	6 cut(s)	384, 416, 422, 454, 605, 637
AluBI	AGCT	6 cut(s)	11, 85, 748, 867, 891, 954
AluI	AGCT	6 cut(s)	11, 85, 748, 867, 891, 954
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	3 cut(s)	485, 498, 750
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	2 cut(s)	595, 733
ApoI	RAATTY	1 cut(s)	845
Asp700I	GAANNNNTTC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	128
AsuHPI	GGTGA	4 cut(s)	149, 268, 625, 678
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	128
AxyI	CCTNAGG	1 cut(s)	156
BaeI	ACNNNNGTAYC	2 cut(s)	449, 482
BamHI	GGATCC	1 cut(s)	490
BbsI	GAAGAC	1 cut(s)	290
BbvI	GCAGC	2 cut(s)	607, 745
BccI	CCATC	2 cut(s)	469, 890
BciT130I	CCWGG	1 cut(s)	660
BciVI	GTATCC	1 cut(s)	324
BclI	TGATCA	2 cut(s)	325, 760
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	2 cut(s)	495, 864
BfmI	CTRYAG	1 cut(s)	911
BfuI	GTATCC	1 cut(s)	324
BisI	GCNGC	2 cut(s)	596, 734
BlsI	GCNGC	2 cut(s)	597, 735
Bme1390I	CCNGG	1 cut(s)	660
Bme18I	GGWCC	1 cut(s)	128
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	1 cut(s)	660
BmsI	GCATC	4 cut(s)	454, 520, 582, 720
BpiI	GAAGAC	1 cut(s)	290
BpuEI	CTTGAG	2 cut(s)	858, 958
BsaJI	CCNNGG	1 cut(s)	523
Bse21I	CCTNAGG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	660
BseDI	CCNNGG	1 cut(s)	523
BseGI	GGATG	2 cut(s)	655, 814
BseMII	CTCAG	1 cut(s)	134
BseRI	GAGGAG	1 cut(s)	327
BseXI	GCAGC	2 cut(s)	607, 745
BshFI	GGCC	1 cut(s)	154
BsiHKCI	CYCGRG	1 cut(s)	242
BsmAI	GTCTC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	154
BsoBI	CYCGRG	1 cut(s)	242
Bsp1407I	TGTACA	1 cut(s)	516
Bsp143I	GATC	5 cut(s)	139, 325, 490, 742, 760
Bsp19I	CCATGG	1 cut(s)	523
BspANI	GGCC	1 cut(s)	154
BspCNI	CTCAG	1 cut(s)	135
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	492
BspPI	GGATC	3 cut(s)	485, 498, 750
BspQI	GCTCTTC	1 cut(s)	75
BsrGI	TGTACA	1 cut(s)	516
BssECI	CCNNGG	1 cut(s)	523
BssMI	GATC	5 cut(s)	139, 325, 490, 742, 760
BssT1I	CCWWGG	1 cut(s)	523
Bst2UI	CCWGG	1 cut(s)	660
Bst4CI	ACNGT	6 cut(s)	137, 172, 555, 690, 806, 835
Bst6I	CTCTTC	1 cut(s)	75
BstAPI	GCANNNNNTGC	1 cut(s)	219
BstAUI	TGTACA	1 cut(s)	516
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	3 cut(s)	143, 156, 367
BstDSI	CCRYGG	1 cut(s)	523
BstF5I	GGATG	2 cut(s)	655, 814
BstKTI	GATC	5 cut(s)	142, 328, 493, 745, 763
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	5 cut(s)	139, 325, 490, 742, 760
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstNI	CCWGG	1 cut(s)	660
BstNSI	RCATGY	1 cut(s)	619
BstSCI	CCNGG	1 cut(s)	658
BstSFI	CTRYAG	1 cut(s)	911
BstV1I	GCAGC	2 cut(s)	607, 745
BstV2I	GAAGAC	1 cut(s)	290
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
Bsu36I	CCTNAGG	1 cut(s)	156
BsuI	GTATCC	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	154
BtgI	CCRYGG	1 cut(s)	523
BtsCI	GGATG	2 cut(s)	655, 814
BtsIMutI	CAGTG	3 cut(s)	177, 551, 831
Cac8I	GCNNGC	1 cut(s)	9
CciI	TCATGA	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	128
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	8 cut(s)	27, 150, 233, 524, 599, 616, 752, 842
CviJI	RGCY	9 cut(s)	11, 85, 154, 185, 400, 748, 867, 891, 954
CviKI_1	RGCY	9 cut(s)	11, 85, 154, 185, 400, 748, 867, 891, 954
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	3 cut(s)	143, 156, 367
DpnI	GATC	5 cut(s)	141, 327, 492, 744, 762
DpnII	GATC	5 cut(s)	139, 325, 490, 742, 760
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	128
Eco81I	CCTNAGG	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	242
EcoRI	GAATTC	1 cut(s)	845
EcoRII	CCWGG	1 cut(s)	658
EcoT14I	CCWWGG	1 cut(s)	523
ErhI	CCWWGG	1 cut(s)	523
FaeI	CATG	8 cut(s)	30, 153, 236, 527, 602, 619, 755, 845
FatI	CATG	8 cut(s)	26, 149, 232, 523, 598, 615, 751, 841
FbaI	TGATCA	2 cut(s)	325, 760
Fnu4HI	GCNGC	2 cut(s)	596, 734
FokI	GGATG	2 cut(s)	642, 801
Fsp4HI	GCNGC	2 cut(s)	596, 734
FspBI	CTAG	2 cut(s)	495, 864
GluI	GCNGC	2 cut(s)	596, 734
HaeIII	GGCC	1 cut(s)	154
HgaI	GACGC	1 cut(s)	103
Hin1II	CATG	8 cut(s)	30, 153, 236, 527, 602, 619, 755, 845
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	3 cut(s)	91, 358, 413
HphI	GGTGA	4 cut(s)	149, 268, 625, 678
Hpy166II	GTNNAC	1 cut(s)	809
Hpy188I	TCNGA	6 cut(s)	144, 450, 471, 612, 765, 967
Hpy188III	TCNNGA	4 cut(s)	233, 244, 875, 975
Hpy8I	GTNNAC	1 cut(s)	809
HpyAV	CCTTC	2 cut(s)	247, 253
HpyCH4III	ACNGT	6 cut(s)	137, 172, 555, 690, 806, 835
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	3 cut(s)	445, 595, 733
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpyF3I	CTNAG	3 cut(s)	143, 156, 367
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	8 cut(s)	30, 153, 236, 527, 602, 619, 755, 845
Ksp22I	TGATCA	2 cut(s)	325, 760
Kzo9I	GATC	5 cut(s)	139, 325, 490, 742, 760
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	900
LpnPI	CCDG	6 cut(s)	144, 488, 602, 645, 672, 725
Lsp1109I	GCAGC	2 cut(s)	607, 745
LweI	GCATC	4 cut(s)	454, 520, 582, 720
MaeI	CTAG	2 cut(s)	495, 864
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	2 cut(s)	690, 857
MalI	GATC	5 cut(s)	141, 327, 492, 744, 762
MboI	GATC	5 cut(s)	139, 325, 490, 742, 760
MboII	GAAGA	8 cut(s)	6, 9, 12, 92, 221, 295, 310, 912
MfeI	CAATTG	1 cut(s)	353
MflI	RGATCY	1 cut(s)	490
MluCI	AATT	5 cut(s)	289, 307, 353, 583, 845
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	6 cut(s)	183, 193, 233, 251, 348, 942
MroXI	GAANNNNTTC	1 cut(s)	379
MseI	TTAA	4 cut(s)	44, 57, 69, 455
MslI	CAYNNNNRTG	1 cut(s)	528
MspR9I	CCNGG	1 cut(s)	660
MunI	CAATTG	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	660
MwoI	GCNNNNNNNGC	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	523
NdeII	GATC	5 cut(s)	139, 325, 490, 742, 760
NlaIII	CATG	8 cut(s)	30, 153, 236, 527, 602, 619, 755, 845
NlaIV	GGNNCC	1 cut(s)	492
NspI	RCATGY	1 cut(s)	619
PaeR7I	CTCGAG	1 cut(s)	242
PagI	TCATGA	1 cut(s)	232
PciI	ACATGT	1 cut(s)	615
PciSI	GCTCTTC	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	379
PfeI	GAWTC	2 cut(s)	91, 358
PkrI	GCNGC	2 cut(s)	597, 735
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
PscI	ACATGT	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	658
PspGI	CCWGG	1 cut(s)	658
PspN4I	GGNNCC	1 cut(s)	492
PspPI	GGNCC	1 cut(s)	128
PsrI	GAACNNNNNNTAC	2 cut(s)	367, 399
PsuI	RGATCY	1 cut(s)	490
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
RseI	CAYNNNNRTG	1 cut(s)	528
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	4 cut(s)	44, 57, 69, 455
SatI	GCNGC	2 cut(s)	596, 734
Sau3AI	GATC	5 cut(s)	139, 325, 490, 742, 760
Sau96I	GGNCC	1 cut(s)	128
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	1 cut(s)	660
SfaNI	GCATC	4 cut(s)	454, 520, 582, 720
SfcI	CTRYAG	1 cut(s)	911
Sfr274I	CTCGAG	1 cut(s)	242
SinI	GGWCC	1 cut(s)	128
SlaI	CTCGAG	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	528
SmlI	CTYRAG	3 cut(s)	242, 873, 973
SmoI	CTYRAG	3 cut(s)	242, 873, 973
Sse9I	AATT	5 cut(s)	289, 307, 353, 583, 845
SspMI	CTAG	2 cut(s)	495, 864
StyD4I	CCNGG	1 cut(s)	658
StyI	CCWWGG	1 cut(s)	523
TaaI	ACNGT	6 cut(s)	137, 172, 555, 690, 806, 835
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	3 cut(s)	89, 243, 887
TasI	AATT	5 cut(s)	289, 307, 353, 583, 845
TatI	WGTACW	1 cut(s)	516
TfiI	GAWTC	2 cut(s)	91, 358
Tru1I	TTAA	4 cut(s)	44, 57, 69, 455
Tru9I	TTAA	4 cut(s)	44, 57, 69, 455
TscAI	CASTG	3 cut(s)	177, 558, 838
TseI	GCWGC	2 cut(s)	595, 733
TspDTI	ATGAA	4 cut(s)	17, 221, 740, 858
TspGWI	ACGGA	1 cut(s)	141
TspRI	CASTG	3 cut(s)	177, 558, 838
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	1 cut(s)	845
XceI	RCATGY	1 cut(s)	619
XcmI	CCANNNNNNNNNTGG	1 cut(s)	596
XhoI	CTCGAG	1 cut(s)	242
XmnI	GAANNNNTTC	1 cut(s)	379
XspI	CTAG	2 cut(s)	495, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.