Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Forward (+)

9736525 .. 9737322

Gene Structure 798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G27580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGATTCTTCAATGTCGACGAAGAAGAAAACCAAATTGTCTGTGAGAAACCAAACTTGTTTCAAGAAATCGTCTCTTTCTTCTTCTTCTACTGCAAAAAAGACCACGAATTTGTCTATGAGAGAAGAGACCATGTTTAAGAAAGCCTTGGAGCTTTCAACTCTGTGCGACATCGAAGTCTGTGTCATATATTATGGTCGTGACGGAGAACTCATCAAGACATGGCCGGAAGATCAATCCAAGGTTCGAGACATGGCTGAGAGGTTTAGCAAACTACACGAGAGAGAGCGACGCAAGAAAAGAACAAACCTTTCTCTGTTTCTACGTAAAAAGATCCTCGACGACAATAAATTGTCGGAGAAAGTCTTAGAGATGAAGGATTCGCTAGAAAGTGGTCTACGGGTATTACAAGATAAGCTTCTGTTACTCCAACCCGAGAACCAGACCGAGCTAGGTCAGAGCCGTGCGGTTTCTTCCACAACGAATCCATTGTCTTCTCCTGAGGATCATCATCATCAACAATGGACAGAACCATTGGTGACTGGTGTGTCAAACACAGAGCAAGACCTATCGACGTCACCATTGAGTAACCATCAGAGCAAATATTCAGTCTTTGTCTATAACCATGACAGCGGAAGCTTCTATCAAGTCCCTGACTCGATCTGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

223

Amino Acids

25.59

Weight (kDa)

8.78

Isoelectric Point (pI)

52.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	30 - 71	8.1e-13	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	176, 547
AatII	GACGTC	1 cut(s)	578
AccI	GTMKAC	2 cut(s)	17, 397
AciI	CCGC	2 cut(s)	467, 633
AclWI	GGATC	2 cut(s)	328, 513
AcoI	YGGCCR	1 cut(s)	224
AcsI	RAATTY	1 cut(s)	109
AcyI	GRCGYC	1 cut(s)	575
AgsI	TTSAA	3 cut(s)	12, 64, 159
AluBI	AGCT	4 cut(s)	154, 418, 451, 639
AluI	AGCT	4 cut(s)	154, 418, 451, 639
Alw26I	GTCTC	3 cut(s)	78, 122, 243
AlwI	GGATC	2 cut(s)	328, 513
Ama87I	CYCGRG	1 cut(s)	434
AoxI	GGCC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	109
ArsI	GACNNNNNNTTYG	8 cut(s)	94, 126, 168, 200, 476, 508, 594, 626
AsuHPI	GGTGA	2 cut(s)	550, 570
AvaI	CYCGRG	1 cut(s)	434
AxyI	CCTNAGG	1 cut(s)	501
BauI	CACGAG	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	486
BccI	CCATC	1 cut(s)	600
BceAI	ACGGC	1 cut(s)	447
BcoDI	GTCTC	3 cut(s)	78, 122, 243
BfaI	CTAG	3 cut(s)	386, 452, 670
BmeT110I	CYCGRG	1 cut(s)	434
BpiI	GAAGAC	1 cut(s)	486
BsaAI	YACGTR	1 cut(s)	326
BsaBI	GATNNNNATC	1 cut(s)	510
BsaHI	GRCGYC	1 cut(s)	575
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	147, 240
Bse1I	ACTGG	1 cut(s)	547
Bse21I	CCTNAGG	1 cut(s)	501
Bse8I	GATNNNNATC	1 cut(s)	510
BseDI	CCNNGG	2 cut(s)	147, 240
BseJI	GATNNNNATC	1 cut(s)	510
BseMII	CTCAG	2 cut(s)	249, 492
BseNI	ACTGG	1 cut(s)	547
BshFI	GGCC	1 cut(s)	226
BsiHKCI	CYCGRG	1 cut(s)	434
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	635
BsmAI	GTCTC	3 cut(s)	78, 122, 243
BsmBI	CGTCTC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	635
BsnI	GGCC	1 cut(s)	226
Bso31I	GGTCTC	1 cut(s)	122
BsoBI	CYCGRG	1 cut(s)	434
Bsp143I	GATC	4 cut(s)	232, 333, 505, 660
BspACI	CCGC	2 cut(s)	467, 633
BspANI	GGCC	1 cut(s)	226
BspCNI	CTCAG	2 cut(s)	250, 493
BspPI	GGATC	2 cut(s)	328, 513
BspTNI	GGTCTC	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	547
BssECI	CCNNGG	2 cut(s)	147, 240
BssMI	GATC	4 cut(s)	232, 333, 505, 660
BssNI	GRCGYC	1 cut(s)	575
BssSI	CACGAG	1 cut(s)	278
BssT1I	CCWWGG	2 cut(s)	147, 240
Bst2BI	CACGAG	1 cut(s)	278
Bst6I	CTCTTC	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	575
BstBAI	YACGTR	1 cut(s)	326
BstDEI	CTNAG	3 cut(s)	258, 367, 501
BstKTI	GATC	4 cut(s)	235, 336, 508, 663
BstMAI	GTCTC	3 cut(s)	78, 122, 243
BstMBI	GATC	4 cut(s)	232, 333, 505, 660
BstSNI	TACGTA	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	486
BstX2I	RGATCY	1 cut(s)	333
BstYI	RGATCY	1 cut(s)	333
Bsu36I	CCTNAGG	1 cut(s)	501
BsuRI	GGCC	1 cut(s)	226
CseI	GACGC	1 cut(s)	300
CviAII	CATG	4 cut(s)	133, 222, 253, 626
CviJI	RGCY	8 cut(s)	146, 154, 226, 257, 418, 451, 462, 639
CviKI_1	RGCY	8 cut(s)	146, 154, 226, 257, 418, 451, 462, 639
DdeI	CTNAG	3 cut(s)	258, 367, 501
DpnI	GATC	4 cut(s)	234, 335, 507, 662
DpnII	GATC	4 cut(s)	232, 333, 505, 660
DrdI	GACNNNNNNGTC	2 cut(s)	176, 547
DseDI	GACNNNNNNGTC	2 cut(s)	176, 547
EaeI	YGGCCR	1 cut(s)	224
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco105I	TACGTA	1 cut(s)	326
Eco130I	CCWWGG	2 cut(s)	147, 240
Eco31I	GGTCTC	1 cut(s)	122
Eco81I	CCTNAGG	1 cut(s)	501
Eco88I	CYCGRG	1 cut(s)	434
EcoT14I	CCWWGG	2 cut(s)	147, 240
ErhI	CCWWGG	2 cut(s)	147, 240
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	4 cut(s)	136, 225, 256, 629
FaiI	YATR	9 cut(s)	119, 134, 188, 190, 195, 223, 254, 621, 627
FalI	AAGNNNNNCTT	4 cut(s)	131, 163, 402, 434
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	4 cut(s)	132, 221, 252, 625
FblI	GTMKAC	2 cut(s)	17, 397
FspBI	CTAG	3 cut(s)	386, 452, 670
HaeIII	GGCC	1 cut(s)	226
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	1 cut(s)	300
Hin1I	GRCGYC	1 cut(s)	575
Hin1II	CATG	4 cut(s)	136, 225, 256, 629
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HindIII	AAGCTT	2 cut(s)	416, 637
HinfI	GANTC	4 cut(s)	5, 380, 484, 656
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	2 cut(s)	550, 570
Hpy166II	GTNNAC	2 cut(s)	18, 398
Hpy188I	TCNGA	3 cut(s)	358, 459, 597
Hpy188III	TCNNGA	5 cut(s)	64, 200, 217, 248, 500
Hpy8I	GTNNAC	2 cut(s)	18, 398
Hpy99I	CGWCG	4 cut(s)	22, 294, 344, 577
HpyAV	CCTTC	1 cut(s)	370
HpyCH4IV	ACGT	2 cut(s)	325, 575
HpyCH4V	TGCA	1 cut(s)	95
HpyF3I	CTNAG	3 cut(s)	258, 367, 501
HpySE526I	ACGT	2 cut(s)	325, 575
Hsp92I	GRCGYC	1 cut(s)	575
Hsp92II	CATG	4 cut(s)	136, 225, 256, 629
Kzo9I	GATC	4 cut(s)	232, 333, 505, 660
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	5 cut(s)	240, 455, 513, 528, 666
MaeI	CTAG	3 cut(s)	386, 452, 670
MaeII	ACGT	2 cut(s)	325, 575
MaeIII	GTNAC	5 cut(s)	200, 423, 538, 576, 587
MalI	GATC	4 cut(s)	234, 335, 507, 662
MboI	GATC	4 cut(s)	232, 333, 505, 660
MboII	GAAGA	9 cut(s)	34, 37, 72, 75, 78, 137, 242, 465, 486
MflI	RGATCY	1 cut(s)	333
MluCI	AATT	3 cut(s)	35, 109, 350
MlyI	GAGTC	1 cut(s)	650
MmeI	TCCRAC	2 cut(s)	336, 454
MnlI	CCTC	3 cut(s)	255, 347, 496
MseI	TTAA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	633
MspI	CCGG	1 cut(s)	227
NdeII	GATC	4 cut(s)	232, 333, 505, 660
NlaIII	CATG	4 cut(s)	136, 225, 256, 629
NmuCI	GTSAC	3 cut(s)	200, 538, 576
PfeI	GAWTC	3 cut(s)	5, 380, 484
PleI	GAGTC	1 cut(s)	650
PpsI	GAGTC	1 cut(s)	650
Ppu21I	YACGTR	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	333
SalI	GTCGAC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	138
Sau3AI	GATC	4 cut(s)	232, 333, 505, 660
SchI	GAGTC	1 cut(s)	650
SnaBI	TACGTA	1 cut(s)	326
Sse9I	AATT	3 cut(s)	35, 109, 350
SsiI	CCGC	2 cut(s)	467, 633
SspI	AATATT	1 cut(s)	605
SspMI	CTAG	3 cut(s)	386, 452, 670
StyI	CCWWGG	2 cut(s)	147, 240
TaiI	ACGT	2 cut(s)	328, 578
TaqI	TCGA	6 cut(s)	17, 174, 247, 339, 572, 659
TaqII	GACCGA	1 cut(s)	461
TasI	AATT	3 cut(s)	35, 109, 350
TfiI	GAWTC	3 cut(s)	5, 380, 484
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TseFI	GTSAC	3 cut(s)	200, 538, 576
Tsp45I	GTSAC	3 cut(s)	200, 538, 576
TspDTI	ATGAA	1 cut(s)	389
TspGWI	ACGGA	1 cut(s)	219
XapI	RAATTY	1 cut(s)	109
XmiI	GTMKAC	2 cut(s)	17, 397
XspI	CTAG	3 cut(s)	386, 452, 670
ZraI	GACGTC	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.