transcription regulatory region sequence-specific DNA binding
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 422 |
| AciI | CCGC | 1 cut(s) | 420 |
| AclWI | GGATC | 1 cut(s) | 376 |
| AcsI | RAATTY | 2 cut(s) | 270, 400 |
| AfaI | GTAC | 1 cut(s) | 353 |
| AflII | CTTAAG | 1 cut(s) | 176 |
| AgsI | TTSAA | 4 cut(s) | 145, 196, 325, 406 |
| AluBI | AGCT | 1 cut(s) | 457 |
| AluI | AGCT | 1 cut(s) | 457 |
| Alw26I | GTCTC | 2 cut(s) | 71, 310 |
| AlwI | GGATC | 1 cut(s) | 376 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 392 |
| ApoI | RAATTY | 2 cut(s) | 270, 400 |
| BbsI | GAAGAC | 2 cut(s) | 173, 218 |
| BciVI | GTATCC | 1 cut(s) | 249 |
| BclI | TGATCA | 1 cut(s) | 250 |
| BcoDI | GTCTC | 2 cut(s) | 71, 310 |
| BfaI | CTAG | 1 cut(s) | 330 |
| BfrI | CTTAAG | 1 cut(s) | 176 |
| BfuI | GTATCC | 1 cut(s) | 249 |
| BmrI | ACTGGG | 1 cut(s) | 380 |
| BmsI | GCATC | 1 cut(s) | 404 |
| BmuI | ACTGGG | 1 cut(s) | 380 |
| BpiI | GAAGAC | 2 cut(s) | 173, 218 |
| BpuEI | CTTGAG | 1 cut(s) | 95 |
| BsaJI | CCNNGG | 1 cut(s) | 358 |
| Bse1I | ACTGG | 2 cut(s) | 334, 386 |
| BseDI | CCNNGG | 1 cut(s) | 358 |
| BseMII | CTCAG | 1 cut(s) | 392 |
| BseNI | ACTGG | 2 cut(s) | 334, 386 |
| Bsh1236I | CGCG | 1 cut(s) | 422 |
| BsmAI | GTCTC | 2 cut(s) | 71, 310 |
| BsmBI | CGTCTC | 1 cut(s) | 71 |
| Bsp1407I | TGTACA | 1 cut(s) | 351 |
| Bsp143I | GATC | 3 cut(s) | 11, 250, 381 |
| Bsp19I | CCATGG | 1 cut(s) | 358 |
| BspACI | CCGC | 1 cut(s) | 420 |
| BspCNI | CTCAG | 1 cut(s) | 391 |
| BspFNI | CGCG | 1 cut(s) | 422 |
| BspPI | GGATC | 1 cut(s) | 376 |
| BspTI | CTTAAG | 1 cut(s) | 176 |
| BsrGI | TGTACA | 1 cut(s) | 351 |
| BsrI | ACTGG | 2 cut(s) | 334, 386 |
| BssECI | CCNNGG | 1 cut(s) | 358 |
| BssMI | GATC | 3 cut(s) | 11, 250, 381 |
| BssT1I | CCWWGG | 1 cut(s) | 358 |
| Bst6I | CTCTTC | 4 cut(s) | 37, 103, 155, 200 |
| BstAFI | CTTAAG | 1 cut(s) | 176 |
| BstAUI | TGTACA | 1 cut(s) | 351 |
| BstDEI | CTNAG | 2 cut(s) | 292, 378 |
| BstDSI | CCRYGG | 1 cut(s) | 358 |
| BstFNI | CGCG | 1 cut(s) | 422 |
| BstKTI | GATC | 3 cut(s) | 14, 253, 384 |
| BstMAI | GTCTC | 2 cut(s) | 71, 310 |
| BstMBI | GATC | 3 cut(s) | 11, 250, 381 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 88 |
| BstUI | CGCG | 1 cut(s) | 422 |
| BstV2I | GAAGAC | 2 cut(s) | 173, 218 |
| BstX2I | RGATCY | 1 cut(s) | 381 |
| BstYI | RGATCY | 1 cut(s) | 381 |
| BsuI | GTATCC | 1 cut(s) | 249 |
| BtgI | CCRYGG | 1 cut(s) | 358 |
| BtsIMutI | CAGTG | 1 cut(s) | 393 |
| CaiI | CAGNNNCTG | 1 cut(s) | 392 |
| CseI | GACGC | 1 cut(s) | 88 |
| Csp6I | GTAC | 1 cut(s) | 352 |
| CviAII | CATG | 3 cut(s) | 102, 302, 359 |
| CviJI | RGCY | 3 cut(s) | 333, 441, 457 |
| CviKI_1 | RGCY | 3 cut(s) | 333, 441, 457 |
| CviQI | GTAC | 1 cut(s) | 352 |
| DdeI | CTNAG | 2 cut(s) | 292, 378 |
| DpnI | GATC | 3 cut(s) | 13, 252, 383 |
| DpnII | GATC | 3 cut(s) | 11, 250, 381 |
| DraI | TTTAAA | 1 cut(s) | 234 |
| Eam1104I | CTCTTC | 4 cut(s) | 37, 103, 155, 200 |
| EarI | CTCTTC | 4 cut(s) | 37, 103, 155, 200 |
| Eco130I | CCWWGG | 1 cut(s) | 358 |
| EcoT14I | CCWWGG | 1 cut(s) | 358 |
| ErhI | CCWWGG | 1 cut(s) | 358 |
| Esp3I | CGTCTC | 1 cut(s) | 71 |
| FaeI | CATG | 3 cut(s) | 105, 305, 362 |
| FaiI | YATR | 7 cut(s) | 8, 103, 303, 350, 360, 462, 468 |
| FatI | CATG | 3 cut(s) | 101, 301, 358 |
| FbaI | TGATCA | 1 cut(s) | 250 |
| FspBI | CTAG | 1 cut(s) | 330 |
| HgaI | GACGC | 1 cut(s) | 88 |
| Hin1II | CATG | 3 cut(s) | 105, 305, 362 |
| HinfI | GANTC | 5 cut(s) | 148, 172, 199, 217, 434 |
| Hpy188I | TCNGA | 4 cut(s) | 111, 153, 204, 381 |
| Hpy188III | TCNNGA | 2 cut(s) | 263, 410 |
| HpyAV | CCTTC | 1 cut(s) | 33 |
| HpyCH4V | TGCA | 1 cut(s) | 395 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 88 |
| HpyF3I | CTNAG | 2 cut(s) | 292, 378 |
| Hsp92II | CATG | 3 cut(s) | 105, 305, 362 |
| Ksp22I | TGATCA | 1 cut(s) | 250 |
| Kzo9I | GATC | 3 cut(s) | 11, 250, 381 |
| LmnI | GCTCC | 1 cut(s) | 454 |
| LpnPI | CCDG | 6 cut(s) | 276, 347, 395, 399, 423, 437 |
| LweI | GCATC | 1 cut(s) | 404 |
| MaeI | CTAG | 1 cut(s) | 330 |
| MaeIII | GTNAC | 3 cut(s) | 92, 388, 423 |
| MalI | GATC | 3 cut(s) | 13, 252, 383 |
| MboI | GATC | 3 cut(s) | 11, 250, 381 |
| MflI | RGATCY | 1 cut(s) | 381 |
| MluCI | AATT | 3 cut(s) | 270, 282, 400 |
| MlyI | GAGTC | 2 cut(s) | 181, 226 |
| MnlI | CCTC | 4 cut(s) | 40, 156, 201, 309 |
| MseI | TTAA | 3 cut(s) | 177, 222, 233 |
| MspCI | CTTAAG | 1 cut(s) | 176 |
| MvnI | CGCG | 1 cut(s) | 422 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 88 |
| NcoI | CCATGG | 1 cut(s) | 358 |
| NdeII | GATC | 3 cut(s) | 11, 250, 381 |
| NlaIII | CATG | 3 cut(s) | 105, 305, 362 |
| NmuCI | GTSAC | 1 cut(s) | 388 |
| PfeI | GAWTC | 3 cut(s) | 148, 199, 434 |
| PleI | GAGTC | 2 cut(s) | 180, 225 |
| PpsI | GAGTC | 2 cut(s) | 180, 225 |
| PstNI | CAGNNNCTG | 1 cut(s) | 392 |
| PsuI | RGATCY | 1 cut(s) | 381 |
| RsaI | GTAC | 1 cut(s) | 353 |
| RsaNI | GTAC | 1 cut(s) | 352 |
| SaqAI | TTAA | 3 cut(s) | 177, 222, 233 |
| Sau3AI | GATC | 3 cut(s) | 11, 250, 381 |
| SchI | GAGTC | 2 cut(s) | 181, 226 |
| SetI | ASST | 3 cut(s) | 25, 301, 459 |
| SfaNI | GCATC | 1 cut(s) | 404 |
| SmlI | CTYRAG | 2 cut(s) | 74, 176 |
| SmoI | CTYRAG | 2 cut(s) | 74, 176 |
| Sse9I | AATT | 3 cut(s) | 270, 282, 400 |
| SsiI | CCGC | 1 cut(s) | 420 |
| SspMI | CTAG | 1 cut(s) | 330 |
| StyI | CCWWGG | 1 cut(s) | 358 |
| TasI | AATT | 3 cut(s) | 270, 282, 400 |
| TatI | WGTACW | 1 cut(s) | 351 |
| TfiI | GAWTC | 3 cut(s) | 148, 199, 434 |
| Tru1I | TTAA | 3 cut(s) | 177, 222, 233 |
| Tru9I | TTAA | 3 cut(s) | 177, 222, 233 |
| TscAI | CASTG | 1 cut(s) | 393 |
| TseFI | GTSAC | 1 cut(s) | 388 |
| Tsp45I | GTSAC | 1 cut(s) | 388 |
| TspDTI | ATGAA | 2 cut(s) | 90, 461 |
| TspRI | CASTG | 1 cut(s) | 393 |
| Vha464I | CTTAAG | 1 cut(s) | 176 |
| XapI | RAATTY | 2 cut(s) | 270, 400 |
| XspI | CTAG | 1 cut(s) | 330 |