Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000215.1

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Forward (+)

86978 .. 88852

Gene Structure 1875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000215.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgccgttgaacattgtcaaggcttctagggcgagagcttttgttggcgggagttttggggaactactatcgccctttagccatatggaacctaaaccttcctcacggccaccatctcaccgatctcattgccccgtcttcactcgtcccttacctttcgctttggcccgctcagatttccagaatctcttcctctctccaattggatcgtcctcttccatggatcccacggtccgctcttcctctcctgcccgccgtgaaagcttctccgggatcgggaaaggaatttgtggtaagaaggcggacgagctttcaacactttgtggtactgatgtgtgcatgatcatcttcaaacctcagaagaccaaaccagagacttggccccgagatttcagagacgccacagatgctactactgcccattctacttgtagtcatgtaacaaataacacgatgaaattggacttgaatctttctgattcttatgattcagaattgattggagatgatgaggcagagcttgatcttgatgtcttgtgcttgagcttatgcttacaggattttcttcttcttccttcaatcctcaaacttgacaataactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

200

Amino Acids

21.89

Weight (kDa)

5.94

Isoelectric Point (pI)

54.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	171, 237
AciI	CCGC	5 cut(s)	48, 169, 235, 253, 302
AclWI	GGATC	4 cut(s)	214, 218, 231, 281
AcoI	YGGCCR	1 cut(s)	107
AcsI	RAATTY	1 cut(s)	285
AcyI	GRCGYC	1 cut(s)	399
AdeI	CACNNNGTG	1 cut(s)	323
AfaI	GTAC	1 cut(s)	328
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	5 cut(s)	10, 315, 352, 469, 579
AluBI	AGCT	5 cut(s)	38, 264, 310, 520, 546
AluI	AGCT	5 cut(s)	38, 264, 310, 520, 546
Alw26I	GTCTC	2 cut(s)	368, 390
AlwI	GGATC	4 cut(s)	214, 218, 231, 281
Ama87I	CYCGRG	1 cut(s)	384
AoxI	GGCC	3 cut(s)	107, 165, 380
ApoI	RAATTY	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	188
AspS9I	GGNCC	3 cut(s)	166, 232, 381
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	110
AvaI	CYCGRG	1 cut(s)	384
AvaII	GGWCC	1 cut(s)	232
BaeI	ACNNNNGTAYC	2 cut(s)	318, 351
BamHI	GGATCC	1 cut(s)	223
BbsI	GAAGAC	2 cut(s)	130, 368
BccI	CCATC	1 cut(s)	121
BceAI	ACGGC	2 cut(s)	122, 240
BcgI	CGANNNNNNTGC	2 cut(s)	111, 145
BclI	TGATCA	1 cut(s)	342
BcnI	CCSGG	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	368, 390
BfaI	CTAG	1 cut(s)	27
Bme1390I	CCNGG	1 cut(s)	271
Bme18I	GGWCC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	384
BmgT120I	GGNCC	3 cut(s)	166, 232, 381
BmiI	GGNNCC	3 cut(s)	90, 225, 383
BmrFI	CCNGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	397
BpiI	GAAGAC	2 cut(s)	130, 368
BpuEI	CTTGAG	1 cut(s)	562
BpuMI	CCSGG	1 cut(s)	271
BsaHI	GRCGYC	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	219, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	219, 228
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	186, 371
BshFI	GGCC	3 cut(s)	109, 167, 382
BsiHKCI	CYCGRG	1 cut(s)	384
BsiSI	CCGG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmAI	GTCTC	2 cut(s)	368, 390
BsmBI	CGTCTC	1 cut(s)	390
BsmFI	GGGAC	1 cut(s)	132
BsnI	GGCC	3 cut(s)	109, 167, 382
BsoBI	CYCGRG	1 cut(s)	384
Bsp143I	GATC	6 cut(s)	122, 206, 223, 273, 342, 523
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	5 cut(s)	48, 169, 235, 253, 302
BspANI	GGCC	3 cut(s)	109, 167, 382
BspCNI	CTCAG	2 cut(s)	185, 370
BspLI	GGNNCC	3 cut(s)	90, 225, 383
BspPI	GGATC	4 cut(s)	214, 218, 231, 281
BspQI	GCTCTTC	1 cut(s)	244
BsrBI	CCGCTC	2 cut(s)	171, 237
BsrDI	GCAATG	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	219, 228
BssMI	GATC	6 cut(s)	122, 206, 223, 273, 342, 523
BssNI	GRCGYC	1 cut(s)	399
BssT1I	CCWWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	3 cut(s)	194, 220, 244
BstACI	GRCGYC	1 cut(s)	399
BstC8I	GCNNGC	2 cut(s)	169, 253
BstDEI	CTNAG	2 cut(s)	172, 357
BstDSI	CCRYGG	2 cut(s)	219, 228
BstKTI	GATC	6 cut(s)	125, 209, 226, 276, 345, 526
BstMAI	GTCTC	2 cut(s)	368, 390
BstMBI	GATC	6 cut(s)	122, 206, 223, 273, 342, 523
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 261, 407, 416
BstSCI	CCNGG	1 cut(s)	269
BstV2I	GAAGAC	2 cut(s)	130, 368
BstX2I	RGATCY	1 cut(s)	223
BstXI	CCANNNNNNTGG	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	3 cut(s)	109, 167, 382
BtgI	CCRYGG	2 cut(s)	219, 228
Cac8I	GCNNGC	2 cut(s)	169, 253
Cfr13I	GGNCC	3 cut(s)	166, 232, 381
CpoI	CGGWCCG	1 cut(s)	232
CseI	GACGC	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	327
CspI	CGGWCCG	1 cut(s)	232
CviAII	CATG	3 cut(s)	220, 340, 437
CviQI	GTAC	1 cut(s)	327
DdeI	CTNAG	2 cut(s)	172, 357
DpnI	GATC	6 cut(s)	124, 208, 225, 275, 344, 525
DpnII	GATC	6 cut(s)	122, 206, 223, 273, 342, 523
DraIII	CACNNNGTG	1 cut(s)	323
EaeI	YGGCCR	1 cut(s)	107
Eam1104I	CTCTTC	3 cut(s)	194, 220, 244
EarI	CTCTTC	3 cut(s)	194, 220, 244
EciI	GGCGGA	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	390
FaeI	CATG	3 cut(s)	223, 343, 440
FaiI	YATR	7 cut(s)	84, 86, 221, 341, 438, 486, 550
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	3 cut(s)	219, 339, 436
FauI	CCCGC	3 cut(s)	41, 176, 260
FauNDI	CATATG	1 cut(s)	84
FbaI	TGATCA	1 cut(s)	342
FspBI	CTAG	1 cut(s)	27
HaeIII	GGCC	3 cut(s)	109, 167, 382
HapII	CCGG	1 cut(s)	270
HgaI	GACGC	1 cut(s)	407
Hin1I	GRCGYC	1 cut(s)	399
Hin1II	CATG	3 cut(s)	223, 343, 440
HindIII	AAGCTT	1 cut(s)	262
HinfI	GANTC	4 cut(s)	184, 469, 479, 488
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	1 cut(s)	110
Hpy188I	TCNGA	5 cut(s)	175, 360, 395, 478, 493
Hpy188III	TCNNGA	3 cut(s)	181, 277, 527
HpyAV	CCTTC	3 cut(s)	108, 292, 585
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	1 cut(s)	339
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 261, 407, 416
HpyF3I	CTNAG	2 cut(s)	172, 357
Hsp92I	GRCGYC	1 cut(s)	399
Hsp92II	CATG	3 cut(s)	223, 343, 440
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	6 cut(s)	122, 206, 223, 273, 342, 523
LguI	GCTCTTC	1 cut(s)	244
LpnPI	CCDG	5 cut(s)	194, 261, 283, 384, 542
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	6 cut(s)	124, 208, 225, 275, 344, 525
MbiI	CCGCTC	2 cut(s)	171, 237
MboI	GATC	6 cut(s)	122, 206, 223, 273, 342, 523
MboII	GAAGA	9 cut(s)	130, 181, 207, 231, 340, 373, 557, 560, 563
MfeI	CAATTG	1 cut(s)	201
MflI	RGATCY	1 cut(s)	223
MluCI	AATT	4 cut(s)	201, 285, 458, 494
MnlI	CCTC	7 cut(s)	112, 203, 223, 253, 366, 505, 593
MroXI	GAANNNNTTC	1 cut(s)	188
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	1 cut(s)	271
MunI	CAATTG	1 cut(s)	201
MwoI	GCNNNNNNNGC	4 cut(s)	29, 261, 407, 416
NciI	CCSGG	1 cut(s)	271
NcoI	CCATGG	1 cut(s)	219
NdeI	CATATG	1 cut(s)	84
NdeII	GATC	6 cut(s)	122, 206, 223, 273, 342, 523
NlaIII	CATG	3 cut(s)	223, 343, 440
NlaIV	GGNNCC	3 cut(s)	90, 225, 383
PciSI	GCTCTTC	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	4 cut(s)	184, 469, 479, 488
PfoI	TCCNGGA	1 cut(s)	269
PspN4I	GGNNCC	3 cut(s)	90, 225, 383
PspPI	GGNCC	3 cut(s)	166, 232, 381
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
Rsr2I	CGGWCCG	1 cut(s)	232
RsrII	CGGWCCG	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	244
Sau3AI	GATC	6 cut(s)	122, 206, 223, 273, 342, 523
Sau96I	GGNCC	3 cut(s)	166, 232, 381
ScrFI	CCNGG	1 cut(s)	271
SetI	ASST	9 cut(s)	40, 94, 100, 157, 266, 312, 358, 522, 548
SfaNI	GCATC	1 cut(s)	397
SinI	GGWCC	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	541
SmoI	CTYRAG	1 cut(s)	541
Sse9I	AATT	4 cut(s)	201, 285, 458, 494
SsiI	CCGC	5 cut(s)	48, 169, 235, 253, 302
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	269
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	232
TasI	AATT	4 cut(s)	201, 285, 458, 494
TfiI	GAWTC	4 cut(s)	184, 469, 479, 488
TspDTI	ATGAA	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.