transcription regulatory region sequence-specific DNA binding
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SRF-TF | PF00319 | 29 - 70 | 9.6e-14 | SRF-type transcription factor (DNA-binding and dimerisation domain) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 173 |
| AccI | GTMKAC | 2 cut(s) | 17, 394 |
| AciI | CCGC | 1 cut(s) | 467 |
| AclWI | GGATC | 2 cut(s) | 325, 522 |
| AcoI | YGGCCR | 1 cut(s) | 221 |
| AcsI | RAATTY | 1 cut(s) | 106 |
| AfaI | GTAC | 1 cut(s) | 402 |
| AgsI | TTSAA | 2 cut(s) | 12, 64 |
| AluBI | AGCT | 3 cut(s) | 151, 415, 462 |
| AluI | AGCT | 3 cut(s) | 151, 415, 462 |
| Alw26I | GTCTC | 2 cut(s) | 78, 240 |
| AlwI | GGATC | 2 cut(s) | 325, 522 |
| Ama87I | CYCGRG | 1 cut(s) | 431 |
| AoxI | GGCC | 1 cut(s) | 221 |
| ApoI | RAATTY | 1 cut(s) | 106 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 91, 123, 165, 197 |
| AvaI | CYCGRG | 1 cut(s) | 431 |
| BauI | CACGAG | 1 cut(s) | 275 |
| BbsI | GAAGAC | 2 cut(s) | 72, 486 |
| BccI | CCATC | 1 cut(s) | 364 |
| BciVI | GTATCC | 1 cut(s) | 495 |
| BcoDI | GTCTC | 2 cut(s) | 78, 240 |
| BfuI | GTATCC | 1 cut(s) | 495 |
| BmeT110I | CYCGRG | 1 cut(s) | 431 |
| BmsI | GCATC | 1 cut(s) | 278 |
| BpiI | GAAGAC | 2 cut(s) | 72, 486 |
| BsaAI | YACGTR | 1 cut(s) | 323 |
| BsaJI | CCNNGG | 1 cut(s) | 144 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 365, 395 |
| BseDI | CCNNGG | 1 cut(s) | 144 |
| BshFI | GGCC | 1 cut(s) | 223 |
| BsiHKCI | CYCGRG | 1 cut(s) | 431 |
| BsiSI | CCGG | 1 cut(s) | 224 |
| BsmAI | GTCTC | 2 cut(s) | 78, 240 |
| BsmBI | CGTCTC | 1 cut(s) | 78 |
| BsnI | GGCC | 1 cut(s) | 223 |
| BsoBI | CYCGRG | 1 cut(s) | 431 |
| Bsp143I | GATC | 3 cut(s) | 229, 330, 514 |
| BspACI | CCGC | 1 cut(s) | 467 |
| BspANI | GGCC | 1 cut(s) | 223 |
| BspPI | GGATC | 2 cut(s) | 325, 522 |
| BssECI | CCNNGG | 1 cut(s) | 144 |
| BssMI | GATC | 3 cut(s) | 229, 330, 514 |
| BssSI | CACGAG | 1 cut(s) | 275 |
| BssT1I | CCWWGG | 1 cut(s) | 144 |
| Bst2BI | CACGAG | 1 cut(s) | 275 |
| BstBAI | YACGTR | 1 cut(s) | 323 |
| BstDEI | CTNAG | 2 cut(s) | 237, 364 |
| BstKTI | GATC | 3 cut(s) | 232, 333, 517 |
| BstMAI | GTCTC | 2 cut(s) | 78, 240 |
| BstMBI | GATC | 3 cut(s) | 229, 330, 514 |
| BstSNI | TACGTA | 1 cut(s) | 323 |
| BstV2I | GAAGAC | 2 cut(s) | 72, 486 |
| BstX2I | RGATCY | 1 cut(s) | 330 |
| BstYI | RGATCY | 1 cut(s) | 330 |
| BsuI | GTATCC | 1 cut(s) | 495 |
| BsuRI | GGCC | 1 cut(s) | 223 |
| Csp6I | GTAC | 1 cut(s) | 401 |
| CviAII | CATG | 3 cut(s) | 130, 219, 250 |
| CviJI | RGCY | 5 cut(s) | 143, 151, 223, 415, 462 |
| CviKI_1 | RGCY | 5 cut(s) | 143, 151, 223, 415, 462 |
| CviQI | GTAC | 1 cut(s) | 401 |
| DdeI | CTNAG | 2 cut(s) | 237, 364 |
| DpnI | GATC | 3 cut(s) | 231, 332, 516 |
| DpnII | GATC | 3 cut(s) | 229, 330, 514 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 173 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 173 |
| EaeI | YGGCCR | 1 cut(s) | 221 |
| Eco105I | TACGTA | 1 cut(s) | 323 |
| Eco130I | CCWWGG | 1 cut(s) | 144 |
| Eco88I | CYCGRG | 1 cut(s) | 431 |
| EcoT14I | CCWWGG | 1 cut(s) | 144 |
| ErhI | CCWWGG | 1 cut(s) | 144 |
| Esp3I | CGTCTC | 1 cut(s) | 78 |
| FaeI | CATG | 3 cut(s) | 133, 222, 253 |
| FaiI | YATR | 6 cut(s) | 131, 185, 187, 192, 220, 251 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 128, 160, 399, 431 |
| FatI | CATG | 3 cut(s) | 129, 218, 249 |
| FblI | GTMKAC | 2 cut(s) | 17, 394 |
| HaeIII | GGCC | 1 cut(s) | 223 |
| HapII | CCGG | 1 cut(s) | 224 |
| Hin1II | CATG | 3 cut(s) | 133, 222, 253 |
| HindIII | AAGCTT | 1 cut(s) | 413 |
| HinfI | GANTC | 3 cut(s) | 5, 157, 377 |
| HpaII | CCGG | 1 cut(s) | 224 |
| Hpy166II | GTNNAC | 2 cut(s) | 18, 395 |
| Hpy188I | TCNGA | 2 cut(s) | 355, 459 |
| Hpy188III | TCNNGA | 4 cut(s) | 64, 197, 214, 245 |
| Hpy8I | GTNNAC | 2 cut(s) | 18, 395 |
| HpyAV | CCTTC | 1 cut(s) | 510 |
| HpyCH4IV | ACGT | 3 cut(s) | 14, 322, 482 |
| HpyCH4V | TGCA | 2 cut(s) | 92, 291 |
| HpyF3I | CTNAG | 2 cut(s) | 237, 364 |
| HpySE526I | ACGT | 3 cut(s) | 14, 322, 482 |
| Hsp92II | CATG | 3 cut(s) | 133, 222, 253 |
| Kzo9I | GATC | 3 cut(s) | 229, 330, 514 |
| LmnI | GCTCC | 1 cut(s) | 148 |
| LpnPI | CCDG | 2 cut(s) | 237, 455 |
| LweI | GCATC | 1 cut(s) | 278 |
| MaeII | ACGT | 3 cut(s) | 14, 322, 482 |
| MaeIII | GTNAC | 2 cut(s) | 197, 420 |
| MalI | GATC | 3 cut(s) | 231, 332, 516 |
| MboI | GATC | 3 cut(s) | 229, 330, 514 |
| MboII | GAAGA | 6 cut(s) | 34, 37, 72, 75, 239, 486 |
| MflI | RGATCY | 1 cut(s) | 330 |
| MluCI | AATT | 3 cut(s) | 35, 106, 347 |
| MlyI | GAGTC | 1 cut(s) | 151 |
| MmeI | TCCRAC | 2 cut(s) | 333, 451 |
| MnlI | CCTC | 4 cut(s) | 252, 344, 367, 505 |
| MseI | TTAA | 1 cut(s) | 135 |
| MspI | CCGG | 1 cut(s) | 224 |
| NdeII | GATC | 3 cut(s) | 229, 330, 514 |
| NlaIII | CATG | 3 cut(s) | 133, 222, 253 |
| NmuCI | GTSAC | 1 cut(s) | 197 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 110 |
| PfeI | GAWTC | 2 cut(s) | 5, 377 |
| PleI | GAGTC | 1 cut(s) | 151 |
| PpsI | GAGTC | 1 cut(s) | 151 |
| Ppu21I | YACGTR | 1 cut(s) | 323 |
| PsuI | RGATCY | 1 cut(s) | 330 |
| RsaI | GTAC | 1 cut(s) | 402 |
| RsaNI | GTAC | 1 cut(s) | 401 |
| SaqAI | TTAA | 1 cut(s) | 135 |
| Sau3AI | GATC | 3 cut(s) | 229, 330, 514 |
| SchI | GAGTC | 1 cut(s) | 151 |
| SfaNI | GCATC | 1 cut(s) | 278 |
| SnaBI | TACGTA | 1 cut(s) | 323 |
| Sse9I | AATT | 3 cut(s) | 35, 106, 347 |
| SsiI | CCGC | 1 cut(s) | 467 |
| StyI | CCWWGG | 1 cut(s) | 144 |
| TaiI | ACGT | 3 cut(s) | 17, 325, 485 |
| TaqI | TCGA | 4 cut(s) | 113, 155, 171, 244 |
| TaqII | GACCGA | 1 cut(s) | 461 |
| TasI | AATT | 3 cut(s) | 35, 106, 347 |
| TfiI | GAWTC | 2 cut(s) | 5, 377 |
| Tru1I | TTAA | 1 cut(s) | 135 |
| Tru9I | TTAA | 1 cut(s) | 135 |
| TseFI | GTSAC | 1 cut(s) | 197 |
| Tsp45I | GTSAC | 1 cut(s) | 197 |
| TspGWI | ACGGA | 1 cut(s) | 216 |
| XapI | RAATTY | 1 cut(s) | 106 |
| XmiI | GTMKAC | 2 cut(s) | 17, 394 |