Rh1CG090200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000326
Physical Location & Seq
Forward (+)
19132012 .. 19132444
433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG090200.1

Sequence Viewer

Length: 357 bp
ATGGAGAACCGATTAAATACTACACGATTGTGCATTAGCTCTCAGAAGAGCTCATACGAAAAATGCAGTTTTAAACTGAGGCTAGGCGGCAATTGTTCTTTGGTTTTTCTTAAAATTGAATTTGATTTTCTGGTCCCATTTATGGAACTCTTGCCCAGTTCTCAAAGAAAGCTTCTTGGGGATCAGGAGAGAAATTTATGTAACAAGGCGGACAAACTTTCAATAGTTTGTGGTACCGGTGTATGCCTGATCTTCAAACCTCACAAGACAAAACCAGAGACTTGGGCCCCAAGATTGTACACAAAGCAACAGCATTATCAAAAAATTCAAGGCAAAGTTGGGGATGAAGAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.6

Weight (kDa)

9.22

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 233
AciI CCGC 2 cut(s) 87, 209
AclWI GGATC 1 cut(s) 189
AcsI RAATTY 3 cut(s) 119, 193, 324
AfaI GTAC 2 cut(s) 235, 299
AfiI CCNNNNNNNGG 1 cut(s) 142
AgeI ACCGGT 1 cut(s) 236
AgsI TTSAA 4 cut(s) 119, 222, 256, 329
AleI CACNNNNGTG 1 cut(s) 28
AluBI AGCT 3 cut(s) 39, 51, 172
AluI AGCT 3 cut(s) 39, 51, 172
Alw21I GWGCWC 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 272
AlwI GGATC 1 cut(s) 189
AoxI GGCC 1 cut(s) 285
ApaI GGGCCC 1 cut(s) 289
ApoI RAATTY 3 cut(s) 119, 193, 324
AsiGI ACCGGT 1 cut(s) 236
Asp718I GGTACC 1 cut(s) 233
AspS9I GGNCC 3 cut(s) 133, 285, 286
AvaII GGWCC 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 289
BaeI ACNNNNGTAYC 2 cut(s) 225, 258
BanI GGYRCC 1 cut(s) 233
BanII GRGCYC 2 cut(s) 53, 289
BarI GAAGNNNNNNTAC 2 cut(s) 38, 70
Bbv12I GWGCWC 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 1 cut(s) 83
BisI GCNGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 3 cut(s) 133, 285, 286
BmiI GGNNCC 4 cut(s) 135, 235, 287, 288
BmrI ACTGGG 1 cut(s) 150
BmuI ACTGGG 1 cut(s) 150
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse118I RCCGGY 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMII CTCAG 2 cut(s) 56, 68
BseNI ACTGG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 289
BshFI GGCC 1 cut(s) 287
BshNI GGYRCC 1 cut(s) 233
BshTI ACCGGT 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 53
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 1 cut(s) 287
Bsp120I GGGCCC 1 cut(s) 285
Bsp1286I GDGCHC 2 cut(s) 53, 289
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 2 cut(s) 181, 249
BspACI CCGC 2 cut(s) 87, 209
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 2 cut(s) 55, 69
BspLI GGNNCC 4 cut(s) 135, 235, 287, 288
BspPI GGATC 1 cut(s) 189
BspQI GCTCTTC 1 cut(s) 41
BspT107I GGYRCC 1 cut(s) 233
BsrFI RCCGGY 1 cut(s) 236
BsrGI TGTACA 1 cut(s) 297
BsrI ACTGG 1 cut(s) 156
BssAI RCCGGY 1 cut(s) 236
BssMI GATC 2 cut(s) 181, 249
Bst6I CTCTTC 1 cut(s) 41
BstAUI TGTACA 1 cut(s) 297
BstDEI CTNAG 2 cut(s) 42, 77
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 2 cut(s) 184, 252
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 2 cut(s) 181, 249
BstSLI GKGCMC 1 cut(s) 289
BstXI CCANNNNNNTGG 1 cut(s) 282
BsuRI GGCC 1 cut(s) 287
BtsCI GGATG 1 cut(s) 349
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 3 cut(s) 133, 285, 286
Csp6I GTAC 2 cut(s) 234, 298
CspAI ACCGGT 1 cut(s) 236
CviJI RGCY 5 cut(s) 39, 51, 82, 172, 287
CviKI_1 RGCY 5 cut(s) 39, 51, 82, 172, 287
CviQI GTAC 2 cut(s) 234, 298
DdeI CTNAG 2 cut(s) 42, 77
DpnI GATC 2 cut(s) 183, 251
DpnII GATC 2 cut(s) 181, 249
DraI TTTAAA 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
EciI GGCGGA 1 cut(s) 224
Ecl136II GAGCTC 1 cut(s) 51
Eco24I GRGCYC 2 cut(s) 53, 289
Eco47I GGWCC 1 cut(s) 133
Eco53kI GAGCTC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 51
EcoO109I RGGNCCY 1 cut(s) 286
EcoT38I GRGCYC 2 cut(s) 53, 289
FaiI YATR 4 cut(s) 55, 143, 199, 244
FaqI GGGAC 1 cut(s) 119
Fnu4HI GCNGC 1 cut(s) 88
FriOI GRGCYC 2 cut(s) 53, 289
Fsp4HI GCNGC 1 cut(s) 88
FspBI CTAG 1 cut(s) 83
GluI GCNGC 1 cut(s) 88
HaeIII GGCC 1 cut(s) 287
HapII CCGG 1 cut(s) 237
HindIII AAGCTT 1 cut(s) 170
HpaII CCGG 1 cut(s) 237
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 1 cut(s) 185
Hpy8I GTNNAC 1 cut(s) 300
HpyCH4V TGCA 2 cut(s) 33, 66
HpyF3I CTNAG 2 cut(s) 42, 77
KpnI GGTACC 1 cut(s) 237
Kzo9I GATC 2 cut(s) 181, 249
LguI GCTCTTC 1 cut(s) 41
LpnPI CCDG 6 cut(s) 116, 169, 170, 250, 260, 288
MaeI CTAG 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 200
MalI GATC 2 cut(s) 183, 251
MboI GATC 2 cut(s) 181, 249
MboII GAAGA 2 cut(s) 58, 244
MfeI CAATTG 1 cut(s) 91
MhlI GDGCHC 2 cut(s) 53, 289
MluCI AATT 5 cut(s) 91, 114, 119, 193, 324
MnlI CCTC 2 cut(s) 72, 270
MseI TTAA 3 cut(s) 14, 72, 111
MslI CAYNNNNRTG 1 cut(s) 28
MspI CCGG 1 cut(s) 237
MunI CAATTG 1 cut(s) 91
NdeII GATC 2 cut(s) 181, 249
NlaIV GGNNCC 4 cut(s) 135, 235, 287, 288
OliI CACNNNNGTG 1 cut(s) 28
PciSI GCTCTTC 1 cut(s) 41
PinAI ACCGGT 1 cut(s) 236
PkrI GCNGC 1 cut(s) 89
Psp124BI GAGCTC 1 cut(s) 53
PspN4I GGNNCC 4 cut(s) 135, 235, 287, 288
PspOMI GGGCCC 1 cut(s) 285
PspPI GGNCC 3 cut(s) 133, 285, 286
RsaI GTAC 2 cut(s) 235, 299
RsaNI GTAC 2 cut(s) 234, 298
RseI CAYNNNNRTG 1 cut(s) 28
SacI GAGCTC 1 cut(s) 53
SapI GCTCTTC 1 cut(s) 41
SaqAI TTAA 3 cut(s) 14, 72, 111
SatI GCNGC 1 cut(s) 88
Sau3AI GATC 2 cut(s) 181, 249
Sau96I GGNCC 3 cut(s) 133, 285, 286
SduI GDGCHC 2 cut(s) 53, 289
SetI ASST 4 cut(s) 41, 53, 174, 262
SinI GGWCC 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 28
Sse9I AATT 5 cut(s) 91, 114, 119, 193, 324
SsiI CCGC 2 cut(s) 87, 209
SspMI CTAG 1 cut(s) 83
SstI GAGCTC 1 cut(s) 53
TasI AATT 5 cut(s) 91, 114, 119, 193, 324
TatI WGTACW 1 cut(s) 297
TauI GCSGC 1 cut(s) 90
Tru1I TTAA 3 cut(s) 14, 72, 111
Tru9I TTAA 3 cut(s) 14, 72, 111
VpaK11BI GGWCC 1 cut(s) 133
XapI RAATTY 3 cut(s) 119, 193, 324
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.