Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Reverse (-)

16868006 .. 16873325

Gene Structure 5320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG098600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAATGGTGATGGTTTCAAAGGTAGCGATCGAGATTCGAGAAGCTGTCAAATAGACTACGATACGACTTTTAGAAGTATGGATCCTCAAAGAAACATACAACAGCTATCGTCTAGTAAGAGTGATCGTAAAAAGGTCCGGGATCGAAAGAAGAATTTAATCAAGAAAGCCGAGGAGCTTTCGAAACTTTGTGGTGTTGATGTATGCTTGATCCTCTACCAACGTCAAAGCACTATAGTAGAGACTTGGCCCCAAGATCCTGCGGAAGTCAAACGCATTATCGATGGGTACAAGGCAAACCCGGGAATCAGAGATGCAAGCATTCCTTCATCGGAGACAAAGGGTTTGGAAGAAACCAAGGCTGGAAAGTCCTATGGTGGTCGTGAGACTGTTGTTAATTCCGACGAGGAGAGGGAGATGTTGTACCCGACATGGGATGATCGATTAGGTTACTGTTCTGAGGACGAATTGATTAGACTGGTGGCTTCCTTGGATTCAAAGCTAGAAGCTTCAACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

173

Amino Acids

19.59

Weight (kDa)

5.43

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	49 - 76	9.6e-10	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	263
AclWI	GGATC	5 cut(s)	77, 90, 150, 205, 251
AcsI	RAATTY	1 cut(s)	154
AfaI	GTAC	2 cut(s)	290, 425
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	3 cut(s)	19, 498, 513
AluBI	AGCT	5 cut(s)	45, 106, 178, 502, 509
AluI	AGCT	5 cut(s)	45, 106, 178, 502, 509
Alw26I	GTCTC	3 cut(s)	236, 329, 380
AlwI	GGATC	5 cut(s)	77, 90, 150, 205, 251
Ama87I	CYCGRG	1 cut(s)	301
AoxI	GGCC	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	154
ArsI	GACNNNNNNTTYG	2 cut(s)	328, 360
AspS9I	GGNCC	2 cut(s)	136, 249
AsuC2I	CCSGG	3 cut(s)	140, 302, 303
AsuHPI	GGTGA	1 cut(s)	20
AsuII	TTCGAA	1 cut(s)	182
AvaI	CYCGRG	1 cut(s)	301
AvaII	GGWCC	1 cut(s)	136
BamHI	GGATCC	1 cut(s)	82
BccI	CCATC	2 cut(s)	5, 278
BcnI	CCSGG	3 cut(s)	140, 302, 303
BcoDI	GTCTC	3 cut(s)	236, 329, 380
BfaI	CTAG	2 cut(s)	114, 503
BfmI	CTRYAG	1 cut(s)	234
Bme1390I	CCNGG	3 cut(s)	140, 302, 303
Bme18I	GGWCC	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	301
BmgT120I	GGNCC	2 cut(s)	136, 249
BmiI	GGNNCC	2 cut(s)	84, 251
BmrFI	CCNGG	3 cut(s)	140, 302, 303
BmsI	GCATC	1 cut(s)	304
Bpu14I	TTCGAA	1 cut(s)	182
BpuMI	CCSGG	3 cut(s)	140, 302, 303
Bsa29I	ATCGAT	2 cut(s)	282, 442
BsaJI	CCNNGG	4 cut(s)	171, 301, 357, 489
BsaXI	ACNNNNNCTCC	2 cut(s)	407, 437
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	1 cut(s)	483
BseCI	ATCGAT	2 cut(s)	282, 442
BseDI	CCNNGG	4 cut(s)	171, 301, 357, 489
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	1 cut(s)	483
BseRI	GAGGAG	2 cut(s)	188, 422
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	250
BshVI	ATCGAT	2 cut(s)	282, 442
BsiEI	CGRYCG	1 cut(s)	31
BsiHKCI	CYCGRG	1 cut(s)	301
BsiSI	CCGG	2 cut(s)	139, 302
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	3 cut(s)	236, 329, 380
BsmI	GAATGC	1 cut(s)	321
BsnI	GGCC	1 cut(s)	250
BsoBI	CYCGRG	1 cut(s)	301
Bsp119I	TTCGAA	1 cut(s)	182
Bsp143I	GATC	7 cut(s)	28, 82, 124, 142, 210, 256, 439
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	1 cut(s)	451
BspDI	ATCGAT	2 cut(s)	282, 442
BspLI	GGNNCC	2 cut(s)	84, 251
BspPI	GGATC	5 cut(s)	77, 90, 150, 205, 251
BspT104I	TTCGAA	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	483
BssECI	CCNNGG	4 cut(s)	171, 301, 357, 489
BssMI	GATC	7 cut(s)	28, 82, 124, 142, 210, 256, 439
BssT1I	CCWWGG	2 cut(s)	357, 489
Bst4CI	ACNGT	2 cut(s)	391, 455
BstBI	TTCGAA	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	319
BstDEI	CTNAG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	442
BstKTI	GATC	7 cut(s)	31, 85, 127, 145, 213, 259, 442
BstMAI	GTCTC	3 cut(s)	236, 329, 380
BstMBI	GATC	7 cut(s)	28, 82, 124, 142, 210, 256, 439
BstMCI	CGRYCG	1 cut(s)	31
BstSCI	CCNGG	3 cut(s)	138, 300, 301
BstSFI	CTRYAG	1 cut(s)	234
BstX2I	RGATCY	2 cut(s)	82, 256
BstYI	RGATCY	2 cut(s)	82, 256
Bsu15I	ATCGAT	2 cut(s)	282, 442
BsuRI	GGCC	1 cut(s)	250
BsuTUI	ATCGAT	2 cut(s)	282, 442
BtsCI	GGATG	1 cut(s)	442
Cac8I	GCNNGC	1 cut(s)	319
Cfr13I	GGNCC	2 cut(s)	136, 249
Cfr9I	CCCGGG	1 cut(s)	301
ClaI	ATCGAT	2 cut(s)	282, 442
Csp6I	GTAC	2 cut(s)	289, 424
CviAII	CATG	1 cut(s)	432
CviJI	RGCY	9 cut(s)	45, 106, 170, 178, 250, 362, 485, 502, 509
CviKI_1	RGCY	9 cut(s)	45, 106, 170, 178, 250, 362, 485, 502, 509
CviQI	GTAC	2 cut(s)	289, 424
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	7 cut(s)	30, 84, 126, 144, 212, 258, 441
DpnII	GATC	7 cut(s)	28, 82, 124, 142, 210, 256, 439
Eco130I	CCWWGG	2 cut(s)	357, 489
Eco47I	GGWCC	1 cut(s)	136
Eco88I	CYCGRG	1 cut(s)	301
EcoT14I	CCWWGG	2 cut(s)	357, 489
ErhI	CCWWGG	2 cut(s)	357, 489
FaeI	CATG	1 cut(s)	435
FaiI	YATR	6 cut(s)	80, 98, 205, 236, 375, 433
FalI	AAGNNNNNCTT	2 cut(s)	310, 342
FatI	CATG	1 cut(s)	431
FokI	GGATG	1 cut(s)	449
FspBI	CTAG	2 cut(s)	114, 503
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	2 cut(s)	139, 302
Hin1II	CATG	1 cut(s)	435
HindIII	AAGCTT	1 cut(s)	507
HinfI	GANTC	3 cut(s)	35, 306, 494
HpaII	CCGG	2 cut(s)	139, 302
HphI	GGTGA	1 cut(s)	20
Hpy188I	TCNGA	4 cut(s)	311, 334, 403, 460
Hpy188III	TCNNGA	4 cut(s)	32, 39, 163, 383
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	1 cut(s)	336
HpyCH4III	ACNGT	2 cut(s)	391, 455
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	1 cut(s)	317
HpyF3I	CTNAG	1 cut(s)	459
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	1 cut(s)	435
Kzo9I	GATC	7 cut(s)	28, 82, 124, 142, 210, 256, 439
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	5 cut(s)	152, 273, 315, 348, 464
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	2 cut(s)	114, 503
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	7 cut(s)	30, 84, 126, 144, 212, 258, 441
MboI	GATC	7 cut(s)	28, 82, 124, 142, 210, 256, 439
MboII	GAAGA	2 cut(s)	163, 362
MflI	RGATCY	2 cut(s)	82, 256
MluCI	AATT	4 cut(s)	154, 397, 467, 517
MmeI	TCCRAC	1 cut(s)	426
MnlI	CCTC	6 cut(s)	96, 166, 224, 400, 405, 454
MseI	TTAA	2 cut(s)	158, 396
MspI	CCGG	2 cut(s)	139, 302
MspR9I	CCNGG	3 cut(s)	140, 302, 303
Mva1269I	GAATGC	1 cut(s)	321
NciI	CCSGG	3 cut(s)	140, 302, 303
NdeII	GATC	7 cut(s)	28, 82, 124, 142, 210, 256, 439
NlaIII	CATG	1 cut(s)	435
NlaIV	GGNNCC	2 cut(s)	84, 251
NmeAIII	GCCGAG	1 cut(s)	196
NspV	TTCGAA	1 cut(s)	182
PctI	GAATGC	1 cut(s)	321
PfeI	GAWTC	3 cut(s)	35, 306, 494
PfoI	TCCNGGA	1 cut(s)	138
Ple19I	CGATCG	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	84, 251
PspPI	GGNCC	2 cut(s)	136, 249
PsuI	RGATCY	2 cut(s)	82, 256
PvuI	CGATCG	1 cut(s)	31
RsaI	GTAC	2 cut(s)	290, 425
RsaNI	GTAC	2 cut(s)	289, 424
SaqAI	TTAA	2 cut(s)	158, 396
Sau3AI	GATC	7 cut(s)	28, 82, 124, 142, 210, 256, 439
Sau96I	GGNCC	2 cut(s)	136, 249
ScrFI	CCNGG	3 cut(s)	140, 302, 303
SetI	ASST	9 cut(s)	25, 47, 108, 138, 180, 226, 451, 504, 511
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	1 cut(s)	234
SfuI	TTCGAA	1 cut(s)	182
SinI	GGWCC	1 cut(s)	136
SmaI	CCCGGG	1 cut(s)	303
Sse9I	AATT	4 cut(s)	154, 397, 467, 517
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	2 cut(s)	114, 503
StyD4I	CCNGG	3 cut(s)	138, 300, 301
StyI	CCWWGG	2 cut(s)	357, 489
TaaI	ACNGT	2 cut(s)	391, 455
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	6 cut(s)	31, 38, 145, 182, 282, 442
TasI	AATT	4 cut(s)	154, 397, 467, 517
TfiI	GAWTC	3 cut(s)	35, 306, 494
Tru1I	TTAA	2 cut(s)	158, 396
Tru9I	TTAA	2 cut(s)	158, 396
TspDTI	ATGAA	2 cut(s)	17, 318
TspMI	CCCGGG	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	136
XapI	RAATTY	1 cut(s)	154
XmaI	CCCGGG	1 cut(s)	301
XspI	CTAG	2 cut(s)	114, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.