Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Forward (+)

15906875 .. 15907942

Gene Structure 1068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G39750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCCATTCGATCTTTACCTTCTTCCTCTCGCTGTTCCTCTTCTTCTTCTTCTTCTTCTTATTCACTCGCTTCAACGAGTCTAAGCAATAGACTTGAGACCATCTTCAAGAAAGCTTCAGAGCTTTGCACTCTCTGTGATATCGAAGCATGCGTCATCTATTACGGACCAGACGGAGAACTCAAGACATGGCCTCCGGAGCGAGAGAAAGTGGAAGACATCGCTCTCAGGTATAGTCAATTAAACGAAGCCTTGAGAAGGAAGAAAAGTGTTACTCTTTATGACTTCCTGAACAAGAAGAAGGACAAGACGAACTTGGAGAAGAAAGCAAAGATAACGGACAATGATGACTTGAAGACTTGTCTGAAGAACGTGAATATTTTAAAGTATCCACTCGCTGATCATTACTCTCCCGACCAAGTTTCTCAACTGATTCAGTCCTTAGAACCTCATGTCTCTAAAGTCCGAGAAAGGATTCGTTTTGTTGAGTCGCAGAAACACAAGGAGACAAAACCGGATCATCAGAGTTTAGCATCATCCTCTCTGAATCATCAGACCCAATCTTTGAACCCTAGCCAGTTTTCGCTGTTTATGTATAACCATGGAGACAATACTCTGTCTCAGATCCCAGTCTCTGCATCAAATTTCAATCAGGATTATTTCTCAGCGTTACTTGAACAATCTGAGTTGAAGAGTCAGATAATGAAGCAGGATCTTTGTGGTTATGAGCAGAACATGTGCATGAGTAACCATGGAGATGCTACGCTCTCTCAAATCCCACTCTCTGCATCAAATCTCAATCAAGATTTCTCAGCCTTACTACAAGACGAATCTGGCTTGATGCAACAGGAGCTTTGTGGTTATGATCAGAACATGTTTATGAACAACAACAACTTTCAACATTCTTTTGTCTCAAACACACAAGATCACTCTGCTCCTGTGGTACAAGAATCTGTGAACAACAACTATGGGTTGATGCCGCATGTTCCTTGTGGTTATGATCAGAACCTGTTCACGAGTGATATTACCAACAACAACCTTCTTATCAACAACTCGATGTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

355

Amino Acids

40.18

Weight (kDa)

5.7

Isoelectric Point (pI)

50.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	25 - 64	8.7e-15	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	1 cut(s)	980
AclWI	GGATC	3 cut(s)	525, 619, 720
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	643
AcuI	CTGAAG	2 cut(s)	102, 386
AfaI	GTAC	1 cut(s)	945
AfiI	CCNNNNNNNGG	1 cut(s)	258
AflIII	ACRYGT	2 cut(s)	735, 873
AgsI	TTSAA	8 cut(s)	75, 109, 355, 568, 649, 677, 691, 899
AluBI	AGCT	3 cut(s)	116, 124, 853
AluI	AGCT	3 cut(s)	116, 124, 853
Alw26I	GTCTC	7 cut(s)	92, 460, 500, 600, 624, 637, 916
AlwI	GGATC	3 cut(s)	525, 619, 720
AlwNI	CAGNNNCTG	2 cut(s)	635, 1009
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	2 cut(s)	3, 191
ApoI	RAATTY	1 cut(s)	643
ArsI	GACNNNNNNTTYG	4 cut(s)	138, 170, 547, 579
Asp700I	GAANNNNTTC	2 cut(s)	474, 1010
AspS9I	GGNCC	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	167
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	1015
BbsI	GAAGAC	2 cut(s)	222, 362
BccI	CCATC	1 cut(s)	110
BciVI	GTATCC	1 cut(s)	399
BclI	TGATCA	3 cut(s)	400, 865, 1000
BcoDI	GTCTC	7 cut(s)	92, 460, 500, 600, 624, 637, 916
BfaI	CTAG	1 cut(s)	573
BfuI	GTATCC	1 cut(s)	399
BisI	GCNGC	1 cut(s)	980
BlsI	GCNGC	1 cut(s)	981
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BmrI	ACTGGG	1 cut(s)	623
BmsI	GCATC	6 cut(s)	542, 647, 748, 797, 831, 966
BmuI	ACTGGG	1 cut(s)	623
BpiI	GAAGAC	2 cut(s)	222, 362
BpuEI	CTTGAG	3 cut(s)	116, 167, 274
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	601, 751
BsaWI	WCCGGW	2 cut(s)	196, 514
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse1I	ACTGG	2 cut(s)	577, 629
BseAI	TCCGGA	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	601, 751
BseGI	GGATG	1 cut(s)	536
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseMII	CTCAG	5 cut(s)	241, 635, 675, 678, 825
BseNI	ACTGG	2 cut(s)	577, 629
BshFI	GGCC	2 cut(s)	5, 193
BsiSI	CCGG	2 cut(s)	197, 515
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmAI	GTCTC	7 cut(s)	92, 460, 500, 600, 624, 637, 916
BsnI	GGCC	2 cut(s)	5, 193
Bso31I	GGTCTC	1 cut(s)	92
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	8 cut(s)	11, 400, 517, 624, 712, 865, 925, 1000
Bsp19I	CCATGG	2 cut(s)	601, 751
BspACI	CCGC	1 cut(s)	980
BspANI	GGCC	2 cut(s)	5, 193
BspCNI	CTCAG	5 cut(s)	240, 634, 676, 677, 824
BspEI	TCCGGA	1 cut(s)	196
BspPI	GGATC	3 cut(s)	525, 619, 720
BspTNI	GGTCTC	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	577, 629
BssECI	CCNNGG	2 cut(s)	601, 751
BssMI	GATC	8 cut(s)	11, 400, 517, 624, 712, 865, 925, 1000
BssSI	CACGAG	1 cut(s)	1015
BssT1I	CCWWGG	2 cut(s)	601, 751
Bst2BI	CACGAG	1 cut(s)	1015
Bst6I	CTCTTC	2 cut(s)	46, 686
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	7 cut(s)	83, 227, 442, 621, 664, 684, 811
BstDSI	CCRYGG	2 cut(s)	601, 751
BstENI	CCTNNNNNAGG	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	536
BstKTI	GATC	8 cut(s)	14, 403, 520, 627, 715, 868, 928, 1003
BstMAI	GTCTC	7 cut(s)	92, 460, 500, 600, 624, 637, 916
BstMBI	GATC	8 cut(s)	11, 400, 517, 624, 712, 865, 925, 1000
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 850
BstNSI	RCATGY	4 cut(s)	153, 739, 877, 986
BstV2I	GAAGAC	2 cut(s)	222, 362
BstX2I	RGATCY	2 cut(s)	624, 712
BstYI	RGATCY	2 cut(s)	624, 712
BsuI	GTATCC	1 cut(s)	399
BsuRI	GGCC	2 cut(s)	5, 193
BtgI	CCRYGG	2 cut(s)	601, 751
BtgZI	GCGATG	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	536
Cac8I	GCNNGC	1 cut(s)	151
CaiI	CAGNNNCTG	2 cut(s)	635, 1009
Cfr13I	GGNCC	1 cut(s)	167
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	944
CviAII	CATG	9 cut(s)	150, 189, 452, 602, 736, 742, 752, 874, 983
CviJI	RGCY	9 cut(s)	5, 116, 124, 193, 251, 576, 815, 837, 853
CviKI_1	RGCY	9 cut(s)	5, 116, 124, 193, 251, 576, 815, 837, 853
CviQI	GTAC	1 cut(s)	944
DdeI	CTNAG	7 cut(s)	83, 227, 442, 621, 664, 684, 811
DpnI	GATC	8 cut(s)	13, 402, 519, 626, 714, 867, 927, 1002
DpnII	GATC	8 cut(s)	11, 400, 517, 624, 712, 865, 925, 1000
DraI	TTTAAA	1 cut(s)	384
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	46, 686
EarI	CTCTTC	2 cut(s)	46, 686
Eco130I	CCWWGG	2 cut(s)	601, 751
Eco31I	GGTCTC	1 cut(s)	92
Eco32I	GATATC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	167
Eco57I	CTGAAG	2 cut(s)	102, 386
EcoNI	CCTNNNNNAGG	1 cut(s)	256
EcoRV	GATATC	1 cut(s)	142
EcoT14I	CCWWGG	2 cut(s)	601, 751
ErhI	CCWWGG	2 cut(s)	601, 751
FaeI	CATG	9 cut(s)	153, 192, 455, 605, 739, 745, 755, 877, 986
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FatI	CATG	9 cut(s)	149, 188, 451, 601, 735, 741, 751, 873, 982
FbaI	TGATCA	3 cut(s)	400, 865, 1000
Fnu4HI	GCNGC	1 cut(s)	980
FokI	GGATG	1 cut(s)	523
Fsp4HI	GCNGC	1 cut(s)	980
FspBI	CTAG	1 cut(s)	573
GluI	GCNGC	1 cut(s)	980
HaeIII	GGCC	2 cut(s)	5, 193
HapII	CCGG	2 cut(s)	197, 515
HgaI	GACGC	1 cut(s)	142
Hin1II	CATG	9 cut(s)	153, 192, 455, 605, 739, 745, 755, 877, 986
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	8 cut(s)	79, 433, 475, 488, 547, 694, 830, 950
HpaII	CCGG	2 cut(s)	197, 515
Hpy166II	GTNNAC	2 cut(s)	958, 1014
Hpy188III	TCNNGA	8 cut(s)	109, 184, 197, 289, 413, 653, 803, 1015
Hpy8I	GTNNAC	2 cut(s)	958, 1014
HpyAV	CCTTC	4 cut(s)	30, 252, 295, 1049
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	5 cut(s)	129, 638, 741, 788, 844
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 850
HpyF3I	CTNAG	7 cut(s)	83, 227, 442, 621, 664, 684, 811
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	9 cut(s)	153, 192, 455, 605, 739, 745, 755, 877, 986
Kpn2I	TCCGGA	1 cut(s)	196
Ksp22I	TGATCA	3 cut(s)	400, 865, 1000
Kzo9I	GATC	8 cut(s)	11, 400, 517, 624, 712, 865, 925, 1000
LmnI	GCTCC	3 cut(s)	199, 850, 940
LweI	GCATC	6 cut(s)	542, 647, 748, 797, 831, 966
MaeI	CTAG	1 cut(s)	573
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	3 cut(s)	271, 669, 746
MalI	GATC	8 cut(s)	13, 402, 519, 626, 714, 867, 927, 1002
MboI	GATC	8 cut(s)	11, 400, 517, 624, 712, 865, 925, 1000
MflI	RGATCY	2 cut(s)	624, 712
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	239, 643
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	88, 497, 703
MnlI	CCTC	5 cut(s)	37, 49, 204, 459, 550
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	196
MroXI	GAANNNNTTC	2 cut(s)	474, 1010
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	242, 383
MslI	CAYNNNNRTG	3 cut(s)	740, 756, 878
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	197, 515
MwoI	GCNNNNNNNGC	2 cut(s)	199, 850
NcoI	CCATGG	2 cut(s)	601, 751
NdeII	GATC	8 cut(s)	11, 400, 517, 624, 712, 865, 925, 1000
NlaIII	CATG	9 cut(s)	153, 192, 455, 605, 739, 745, 755, 877, 986
NspI	RCATGY	4 cut(s)	153, 739, 877, 986
PaeI	GCATGC	1 cut(s)	153
PciI	ACATGT	2 cut(s)	735, 873
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PdmI	GAANNNNTTC	2 cut(s)	474, 1010
PfeI	GAWTC	5 cut(s)	433, 475, 547, 830, 950
PkrI	GCNGC	1 cut(s)	981
PleI	GAGTC	3 cut(s)	87, 496, 702
PpsI	GAGTC	3 cut(s)	87, 496, 702
PscI	ACATGT	2 cut(s)	735, 873
PspPI	GGNCC	1 cut(s)	167
PstNI	CAGNNNCTG	2 cut(s)	635, 1009
PsuI	RGATCY	2 cut(s)	624, 712
RsaI	GTAC	1 cut(s)	945
RsaNI	GTAC	1 cut(s)	944
RseI	CAYNNNNRTG	3 cut(s)	740, 756, 878
SaqAI	TTAA	2 cut(s)	242, 383
SatI	GCNGC	1 cut(s)	980
Sau3AI	GATC	8 cut(s)	11, 400, 517, 624, 712, 865, 925, 1000
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	3 cut(s)	88, 497, 703
SetI	ASST	9 cut(s)	22, 118, 126, 233, 375, 451, 855, 1011, 1041
SfaNI	GCATC	6 cut(s)	542, 647, 748, 797, 831, 966
SinI	GGWCC	1 cut(s)	167
SmiMI	CAYNNNNRTG	3 cut(s)	740, 756, 878
SmlI	CTYRAG	3 cut(s)	95, 182, 253
SmoI	CTYRAG	3 cut(s)	95, 182, 253
SphI	GCATGC	1 cut(s)	153
Sse9I	AATT	2 cut(s)	239, 643
SsiI	CCGC	1 cut(s)	980
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	1 cut(s)	573
StyI	CCWWGG	2 cut(s)	601, 751
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	3 cut(s)	10, 144, 1055
TasI	AATT	2 cut(s)	239, 643
TauI	GCSGC	1 cut(s)	982
TfiI	GAWTC	5 cut(s)	433, 475, 547, 830, 950
Tru1I	TTAA	2 cut(s)	242, 383
Tru9I	TTAA	2 cut(s)	242, 383
TspDTI	ATGAA	2 cut(s)	719, 896
TspGWI	ACGGA	3 cut(s)	180, 189, 353
VpaK11BI	GGWCC	1 cut(s)	167
XagI	CCTNNNNNAGG	1 cut(s)	256
XapI	RAATTY	1 cut(s)	643
XceI	RCATGY	4 cut(s)	153, 739, 877, 986
XmnI	GAANNNNTTC	2 cut(s)	474, 1010
XspI	CTAG	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.