Rh1AG091800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000326
Physical Location & Seq
Forward (+)
15982812 .. 15983069
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG091800.1

Sequence Viewer

Length: 258 bp
ATGGCGATGAAGAACAATGACATCAAAGGTACAAGAAGTCCTTCATCCCTGGGGGCAGTCAGAGACGCCACAGATGCTACTACTGCCCATTCTACTTGTAGTCATGTAACAAATAACAAGATGAAATTGGACTTAAATCTTTCTGATTCTTATGATTCAGAATTGATTGGAGATGATGAGGCAGAGCTTGCTACACTGGAAGCTATGCTGCAAGCTATAGCCAAGAGAATTGCTTTACGGGAGGCAACACATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.16

Weight (kDa)

5.16

Isoelectric Point (pI)

48.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 1 cut(s) 31
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 3 cut(s) 187, 203, 215
AluI AGCT 3 cut(s) 187, 203, 215
Alw26I GTCTC 1 cut(s) 57
ApeKI GCWGC 1 cut(s) 208
Asp700I GAANNNNTTC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 195
BciT130I CCWGG 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 64
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 48, 49
Bse1I ACTGG 1 cut(s) 201
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 2 cut(s) 48, 49
BseGI GGATG 1 cut(s) 44
BseNI ACTGG 1 cut(s) 201
BseXI GCAGC 1 cut(s) 195
BsmAI GTCTC 1 cut(s) 57
BsmBI CGTCTC 1 cut(s) 57
BsrI ACTGG 1 cut(s) 201
BssECI CCNNGG 2 cut(s) 48, 49
BssNI GRCGYC 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 50
BstACI GRCGYC 1 cut(s) 66
BstAPI GCANNNNNTGC 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 189, 213
BstF5I GGATG 1 cut(s) 44
BstMAI GTCTC 1 cut(s) 57
BstMWI GCNNNNNNNGC 3 cut(s) 74, 83, 188
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 48
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 195
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 194
Cac8I GCNNGC 2 cut(s) 189, 213
CseI GACGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 30
CviAII CATG 1 cut(s) 104
CviJI RGCY 4 cut(s) 187, 203, 215, 221
CviKI_1 RGCY 4 cut(s) 187, 203, 215, 221
CviQI GTAC 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 48
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 1 cut(s) 107
FaiI YATR 5 cut(s) 105, 153, 206, 218, 252
FalI AAGNNNNNCTT 2 cut(s) 25, 57
FatI CATG 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 209
FokI GGATG 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 209
GluI GCNGC 1 cut(s) 209
HgaI GACGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 1 cut(s) 107
HinfI GANTC 2 cut(s) 146, 155
Hpy188I TCNGA 3 cut(s) 62, 145, 160
HpyAV CCTTC 1 cut(s) 51
HpyCH4V TGCA 1 cut(s) 211
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 83, 188
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 1 cut(s) 107
LpnPI CCDG 3 cut(s) 35, 62, 182
Lsp1109I GCAGC 1 cut(s) 195
LweI GCATC 1 cut(s) 64
MaeIII GTNAC 1 cut(s) 106
MboII GAAGA 1 cut(s) 22
MluCI AATT 3 cut(s) 125, 161, 228
MnlI CCTC 2 cut(s) 172, 235
MroXI GAANNNNTTC 1 cut(s) 40
MseI TTAA 2 cut(s) 134, 256
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 3 cut(s) 74, 83, 188
NlaIII CATG 1 cut(s) 107
PasI CCCWGGG 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 40
PfeI GAWTC 2 cut(s) 146, 155
PkrI GCNGC 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
SaqAI TTAA 2 cut(s) 134, 256
SatI GCNGC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 50
SetI ASST 4 cut(s) 31, 189, 205, 217
SfaNI GCATC 1 cut(s) 64
SfcI CTRYAG 1 cut(s) 216
Sse9I AATT 3 cut(s) 125, 161, 228
StyD4I CCNGG 1 cut(s) 48
TasI AATT 3 cut(s) 125, 161, 228
TfiI GAWTC 2 cut(s) 146, 155
Tru1I TTAA 2 cut(s) 134, 256
Tru9I TTAA 2 cut(s) 134, 256
TscAI CASTG 1 cut(s) 201
TseI GCWGC 1 cut(s) 208
TspDTI ATGAA 3 cut(s) 23, 33, 137
TspRI CASTG 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.