Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000215.1

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Forward (+)

65786 .. 66160

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000215.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atggaactcttgcccagttctcgaaaaaagcttctccaggaccgggagaggaatttatgtaagaaggtgtacaagctttcaatactttgtggtaccgatgtatacatgatcgtcttcaaacctcataagaccaaaccagagacttggcccttagattgtacacaagtccaccgcattataaacacgtacaaggcaaagctggcaatgaagaacaatgacatcaaaggtacaagaagtccttcatccctaggggcaatcagagacgccacagatgctactactgcccattctaattgtagtcatgaaacaaataagaagatgaaattggacttaaatctttctgattcttatgataaccgaattgattggagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

124

Amino Acids

14.31

Weight (kDa)

9.54

Isoelectric Point (pI)

33.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
Acc65I	GGTACC	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	52
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	5 cut(s)	71, 94, 160, 188, 229
AfiI	CCNNNNNNNGG	1 cut(s)	43
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	81, 118
AjnI	CCWGG	1 cut(s)	36
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AluBI	AGCT	3 cut(s)	31, 76, 199
AluI	AGCT	3 cut(s)	31, 76, 199
Alw26I	GTCTC	2 cut(s)	134, 255
AoxI	GGCC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	52
Asp700I	GAANNNNTTC	1 cut(s)	238
Asp718I	GGTACC	1 cut(s)	92
AspA2I	CCTAGG	1 cut(s)	247
AspS9I	GGNCC	2 cut(s)	40, 147
AsuC2I	CCSGG	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	40
AvrII	CCTAGG	1 cut(s)	247
BaeI	ACNNNNGTAYC	2 cut(s)	84, 117
BanI	GGYRCC	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	38
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	2 cut(s)	134, 255
BfaI	CTAG	1 cut(s)	248
BlnI	CCTAGG	1 cut(s)	247
Bme1390I	CCNGG	2 cut(s)	38, 44
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	40, 147
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	2 cut(s)	38, 44
BmrI	ACTGGG	1 cut(s)	9
BmsI	GCATC	1 cut(s)	262
BmuI	ACTGGG	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	106
BpmI	CTGGAG	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	44
BsaAI	YACGTR	1 cut(s)	186
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	15
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMI	GCAATG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	148
BshNI	GGYRCC	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	2 cut(s)	134, 255
BsmBI	CGTCTC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	148
Bsp1407I	TGTACA	2 cut(s)	69, 158
Bsp143I	GATC	1 cut(s)	108
BspACI	CCGC	1 cut(s)	172
BspANI	GGCC	1 cut(s)	148
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	94
BspT107I	GGYRCC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	210
BsrGI	TGTACA	2 cut(s)	69, 158
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	1 cut(s)	108
BssNAI	GTATAC	1 cut(s)	103
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	247
Bst1107I	GTATAC	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	264
BstAUI	TGTACA	2 cut(s)	69, 158
BstBAI	YACGTR	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	242
BstKTI	GATC	1 cut(s)	111
BstMAI	GTCTC	2 cut(s)	134, 255
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 272, 281
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	2 cut(s)	36, 42
BstV2I	GAAGAC	1 cut(s)	106
BstXI	CCANNNNNNTGG	1 cut(s)	144
BstZ17I	GTATAC	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	242
Cac8I	GCNNGC	1 cut(s)	201
CciI	TCATGA	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	40, 147
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	5 cut(s)	70, 93, 159, 187, 228
CviAII	CATG	2 cut(s)	106, 302
CviJI	RGCY	4 cut(s)	31, 76, 148, 199
CviKI_1	RGCY	4 cut(s)	31, 76, 148, 199
CviQI	GTAC	5 cut(s)	70, 93, 159, 187, 228
DdeI	CTNAG	1 cut(s)	151
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	2 cut(s)	109, 305
FaiI	YATR	7 cut(s)	58, 103, 107, 126, 179, 303, 351
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
FatI	CATG	2 cut(s)	105, 301
FblI	GTMKAC	1 cut(s)	102
FokI	GGATG	1 cut(s)	229
FspBI	CTAG	1 cut(s)	248
GsuI	CTGGAG	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	1 cut(s)	43
HgaI	GACGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	2 cut(s)	109, 305
HindIII	AAGCTT	2 cut(s)	29, 74
HinfI	GANTC	1 cut(s)	344
HpaII	CCGG	1 cut(s)	43
Hpy166II	GTNNAC	4 cut(s)	70, 103, 161, 169
Hpy188I	TCNGA	2 cut(s)	260, 343
Hpy188III	TCNNGA	2 cut(s)	21, 302
Hpy8I	GTNNAC	4 cut(s)	70, 103, 161, 169
HpyAV	CCTTC	2 cut(s)	58, 249
HpyCH4IV	ACGT	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 272, 281
HpyF3I	CTNAG	1 cut(s)	151
HpySE526I	ACGT	1 cut(s)	185
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	109, 305
KpnI	GGTACC	1 cut(s)	96
Kzo9I	GATC	1 cut(s)	108
LpnPI	CCDG	6 cut(s)	23, 28, 50, 56, 150, 185
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	1 cut(s)	185
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	3 cut(s)	106, 220, 328
MluCI	AATT	4 cut(s)	52, 292, 323, 360
MnlI	CCTC	2 cut(s)	42, 132
MroXI	GAANNNNTTC	1 cut(s)	238
MseI	TTAA	1 cut(s)	332
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	2 cut(s)	38, 44
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	200, 272, 281
NciI	CCSGG	1 cut(s)	44
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	2 cut(s)	109, 305
NlaIV	GGNNCC	1 cut(s)	94
PagI	TCATGA	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	344
PfoI	TCCNGGA	1 cut(s)	36
Ppu21I	YACGTR	1 cut(s)	186
PsiI	TTATAA	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	2 cut(s)	40, 147
RsaI	GTAC	5 cut(s)	71, 94, 160, 188, 229
RsaNI	GTAC	5 cut(s)	70, 93, 159, 187, 228
SaqAI	TTAA	1 cut(s)	332
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	2 cut(s)	40, 147
ScrFI	CCNGG	2 cut(s)	38, 44
SetI	ASST	7 cut(s)	33, 69, 78, 124, 188, 201, 229
SfaNI	GCATC	1 cut(s)	262
SinI	GGWCC	1 cut(s)	40
Sse9I	AATT	4 cut(s)	52, 292, 323, 360
SsiI	CCGC	1 cut(s)	172
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	2 cut(s)	36, 42
StyI	CCWWGG	1 cut(s)	247
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	1 cut(s)	22
TasI	AATT	4 cut(s)	52, 292, 323, 360
TatI	WGTACW	2 cut(s)	69, 158
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TspDTI	ATGAA	4 cut(s)	221, 231, 318, 335
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	52
XmaJI	CCTAGG	1 cut(s)	247
XmiI	GTMKAC	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	238
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.