Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000326

Physical Location & Seq

Genomic Coordinates Reverse (-)

21823269 .. 21825599

Gene Structure 2331 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g27520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGGTCGAGGTGGTGGAAAACTGAACATGCAACTCATTGCCGATGAGAGATCTCGCAGAATAACGTTCCAAAAGAGAAAGAAGGGCATTCTCAAGAAAGCTTACGAGTTTTCAACCCTTTGCGGTGTAGATATGTGCTTGATAATCTATGGTCCAAAACAGTCTGATCGGCGACCTGCAGAACTCCACACCTGGCCACAAAACCCAGATGAGGTTAATCGCATTATTGAAAAGTTCAAGCTCAACAACAAACCAGCCACCAAAACCTACAACTTGTCGGATTGGTTGCATGAGCAAAAGGGCAAGATGGATGCCAAAGTCTCCAAATTGAAGAGTGATATGTATGAGGCCAAGTACCCTACGTGGGACGACCGCATCAATGAGTTTTCAGAAGAACAACTGGAAGAGCTTGTCAATGTGTTGGATCAAAAGATTGAATATGGGAAGAGAACACTGAATAATGTGAGGGCACCACGGACGTTGCAGCTAGGTGGAAACGATGTTGGTGATGTTACTAGCCAAAAGCTCTCTAACCACATGCACAATTATGCACACTACCTTGGTGAATATGAGGATCACAAGCCTAGCTATGTGGGAATGATGGATATGCAAATGCCCTTCTCAATTGATCAACCTACTAACTATTCTCAAATATTTCAATATGATTCAGATTTGAATTCAATGATGGCTAATCCGTTGATGGGATATCCAAGAACCTACTATGATCCAAGTGAAGAAAATCAGATGGTCCAATCTCCTGCCGAGAAAATGATGATGTTCAATAGCGTTCCAGGTTCCTCCATGAGCCACTATGCACAACTAATACATAAGCCTATGTCGTACACTCAGTATCCGATGAATATTTCGAGTATTTCATCACAACTGGGAACTCCTCAAGTGAAAGATTGTGAAGATGATAATCTGGTCCATGACAAGATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

315

Amino Acids

36.34

Weight (kDa)

6.32

Isoelectric Point (pI)

55.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	13 - 54	2.5e-18	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca	FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica	MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica	Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis	pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis	RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata	RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora	Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa	Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha	Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana	Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	184
AccB1I	GGYRCC	1 cut(s)	469
AciI	CCGC	2 cut(s)	123, 373
AclI	AACGTT	1 cut(s)	65
AclWI	GGATC	3 cut(s)	432, 582, 719
AcoI	YGGCCR	1 cut(s)	194
AcsI	RAATTY	1 cut(s)	676
AfaI	GTAC	2 cut(s)	356, 842
AfiI	CCNNNNNNNGG	3 cut(s)	211, 364, 701
AgsI	TTSAA	9 cut(s)	114, 230, 238, 331, 437, 659, 676, 681, 781
AjnI	CCWGG	2 cut(s)	191, 790
AluBI	AGCT	6 cut(s)	101, 241, 409, 487, 526, 588
AluI	AGCT	6 cut(s)	101, 241, 409, 487, 526, 588
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	3 cut(s)	432, 582, 719
AoxI	GGCC	2 cut(s)	194, 348
ApeKI	GCWGC	1 cut(s)	484
ApoI	RAATTY	1 cut(s)	676
AspS9I	GGNCC	3 cut(s)	152, 748, 925
AsuHPI	GGTGA	2 cut(s)	518, 575
AvaII	GGWCC	3 cut(s)	152, 748, 925
BaeGI	GKGCMC	1 cut(s)	472
BalI	TGGCCA	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	469
BbvI	GCAGC	1 cut(s)	496
BccI	CCATC	6 cut(s)	301, 595, 679, 694, 739, 931
BciT130I	CCWGG	2 cut(s)	193, 792
BciVI	GTATCC	1 cut(s)	861
BclI	TGATCA	1 cut(s)	628
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	3 cut(s)	488, 516, 585
BfmI	CTRYAG	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	184
BfuI	GTATCC	1 cut(s)	861
BglII	AGATCT	1 cut(s)	50
BisI	GCNGC	1 cut(s)	485
BlsI	GCNGC	1 cut(s)	486
Bme1390I	CCNGG	2 cut(s)	193, 792
Bme18I	GGWCC	3 cut(s)	152, 748, 925
BmgT120I	GGNCC	3 cut(s)	152, 748, 925
BmiI	GGNNCC	2 cut(s)	471, 796
BmrFI	CCNGG	2 cut(s)	193, 792
BmrI	ACTGGG	1 cut(s)	893
BmsI	GCATC	2 cut(s)	301, 384
BmuI	ACTGGG	1 cut(s)	893
BpuEI	CTTGAG	2 cut(s)	77, 879
BsaAI	YACGTR	1 cut(s)	363
BsaBI	GATNNNNATC	1 cut(s)	918
BsaJI	CCNNGG	2 cut(s)	473, 559
Bsc4I	CCNNNNNNNGG	3 cut(s)	211, 364, 701
Bse1I	ACTGG	2 cut(s)	405, 888
Bse3DI	GCAATG	1 cut(s)	36
Bse8I	GATNNNNATC	1 cut(s)	918
BseBI	CCWGG	2 cut(s)	193, 792
BseDI	CCNNGG	2 cut(s)	473, 559
BseGI	GGATG	1 cut(s)	316
BseJI	GATNNNNATC	1 cut(s)	918
BseLI	CCNNNNNNNGG	3 cut(s)	211, 364, 701
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	860
BseNI	ACTGG	2 cut(s)	405, 888
BseRI	GAGGAG	1 cut(s)	882
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	1 cut(s)	496
Bsh1285I	CGRYCG	1 cut(s)	373
BshFI	GGCC	2 cut(s)	196, 350
BshNI	GGYRCC	1 cut(s)	469
BsiEI	CGRYCG	1 cut(s)	373
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	3 cut(s)	211, 364, 701
BsmAI	GTCTC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	380
BsmI	GAATGC	1 cut(s)	87
BsnI	GGCC	2 cut(s)	196, 350
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	6 cut(s)	50, 166, 424, 574, 628, 724
BspACI	CCGC	2 cut(s)	123, 373
BspANI	GGCC	2 cut(s)	196, 350
BspCNI	CTCAG	1 cut(s)	859
BspLI	GGNNCC	2 cut(s)	471, 796
BspMAI	CTGCAG	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	3 cut(s)	432, 582, 719
BspQI	GCTCTTC	1 cut(s)	399
BspT107I	GGYRCC	1 cut(s)	469
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	2 cut(s)	405, 888
BssECI	CCNNGG	2 cut(s)	473, 559
BssMI	GATC	6 cut(s)	50, 166, 424, 574, 628, 724
BssT1I	CCWWGG	1 cut(s)	559
Bst2UI	CCWGG	2 cut(s)	193, 792
Bst4CI	ACNGT	1 cut(s)	162
Bst6I	CTCTTC	3 cut(s)	326, 399, 440
BstBAI	YACGTR	1 cut(s)	363
BstDEI	CTNAG	1 cut(s)	846
BstDSI	CCRYGG	1 cut(s)	473
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	6 cut(s)	53, 169, 427, 577, 631, 727
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	6 cut(s)	50, 166, 424, 574, 628, 724
BstMCI	CGRYCG	1 cut(s)	373
BstNI	CCWGG	2 cut(s)	193, 792
BstNSI	RCATGY	2 cut(s)	31, 541
BstSCI	CCNGG	2 cut(s)	191, 790
BstSFI	CTRYAG	1 cut(s)	177
BstSLI	GKGCMC	1 cut(s)	472
BstV1I	GCAGC	1 cut(s)	496
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	861
BsuRI	GGCC	2 cut(s)	196, 350
BtgI	CCRYGG	1 cut(s)	473
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	452
BveI	ACCTGC	1 cut(s)	184
Cfr13I	GGNCC	3 cut(s)	152, 748, 925
Csp6I	GTAC	2 cut(s)	355, 841
CspCI	CAANNNNNGTGG	2 cut(s)	462, 497
CviAII	CATG	5 cut(s)	28, 290, 538, 802, 929
CviQI	GTAC	2 cut(s)	355, 841
DdeI	CTNAG	1 cut(s)	846
DpnI	GATC	6 cut(s)	52, 168, 426, 576, 630, 726
DpnII	GATC	6 cut(s)	50, 166, 424, 574, 628, 724
EaeI	YGGCCR	1 cut(s)	194
Eam1104I	CTCTTC	3 cut(s)	326, 399, 440
EarI	CTCTTC	3 cut(s)	326, 399, 440
Eco130I	CCWWGG	1 cut(s)	559
Eco32I	GATATC	1 cut(s)	707
Eco47I	GGWCC	3 cut(s)	152, 748, 925
EcoRI	GAATTC	1 cut(s)	676
EcoRII	CCWGG	2 cut(s)	191, 790
EcoRV	GATATC	1 cut(s)	707
EcoT14I	CCWWGG	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	559
FaeI	CATG	5 cut(s)	31, 293, 541, 805, 932
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	5 cut(s)	27, 289, 537, 801, 928
FbaI	TGATCA	1 cut(s)	628
Fnu4HI	GCNGC	1 cut(s)	485
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	485
FspBI	CTAG	3 cut(s)	488, 516, 585
GluI	GCNGC	1 cut(s)	485
HaeIII	GGCC	2 cut(s)	196, 350
Hin1II	CATG	5 cut(s)	31, 293, 541, 805, 932
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	1 cut(s)	665
HphI	GGTGA	2 cut(s)	518, 575
Hpy166II	GTNNAC	1 cut(s)	843
Hpy188I	TCNGA	6 cut(s)	166, 280, 391, 670, 744, 855
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	843
HpyAV	CCTTC	2 cut(s)	76, 628
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4IV	ACGT	3 cut(s)	65, 362, 479
HpyCH4V	TGCA	8 cut(s)	31, 179, 289, 484, 541, 551, 610, 815
HpyF3I	CTNAG	1 cut(s)	846
HpySE526I	ACGT	3 cut(s)	65, 362, 479
Hsp92II	CATG	5 cut(s)	31, 293, 541, 805, 932
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	6 cut(s)	50, 166, 424, 574, 628, 724
LguI	GCTCTTC	1 cut(s)	399
Lsp1109I	GCAGC	1 cut(s)	496
LweI	GCATC	2 cut(s)	301, 384
MaeI	CTAG	3 cut(s)	488, 516, 585
MaeII	ACGT	3 cut(s)	65, 362, 479
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	6 cut(s)	52, 168, 426, 576, 630, 726
MboI	GATC	6 cut(s)	50, 166, 424, 574, 628, 724
MboII	GAAGA	6 cut(s)	343, 404, 416, 457, 746, 923
MfeI	CAATTG	1 cut(s)	624
MflI	RGATCY	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	472
MlsI	TGGCCA	1 cut(s)	196
MluCI	AATT	4 cut(s)	326, 544, 624, 676
MluNI	TGGCCA	1 cut(s)	196
MmeI	TCCRAC	2 cut(s)	258, 402
MnlI	CCTC	6 cut(s)	205, 340, 459, 565, 808, 903
Mox20I	TGGCCA	1 cut(s)	196
MscI	TGGCCA	1 cut(s)	196
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	546
Msp20I	TGGCCA	1 cut(s)	196
MspR9I	CCNGG	2 cut(s)	193, 792
MunI	CAATTG	1 cut(s)	624
Mva1269I	GAATGC	1 cut(s)	87
MvaI	CCWGG	2 cut(s)	193, 792
NdeII	GATC	6 cut(s)	50, 166, 424, 574, 628, 724
NlaIII	CATG	5 cut(s)	31, 293, 541, 805, 932
NlaIV	GGNNCC	2 cut(s)	471, 796
NmeAIII	GCCGAG	1 cut(s)	787
NspI	RCATGY	2 cut(s)	31, 541
PciSI	GCTCTTC	1 cut(s)	399
PctI	GAATGC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	665
PkrI	GCNGC	1 cut(s)	486
Ppu21I	YACGTR	1 cut(s)	363
Psp1406I	AACGTT	1 cut(s)	65
Psp6I	CCWGG	2 cut(s)	191, 790
PspGI	CCWGG	2 cut(s)	191, 790
PspN4I	GGNNCC	2 cut(s)	471, 796
PspPI	GGNCC	3 cut(s)	152, 748, 925
PstI	CTGCAG	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	50
RsaI	GTAC	2 cut(s)	356, 842
RsaNI	GTAC	2 cut(s)	355, 841
RseI	CAYNNNNRTG	1 cut(s)	546
SapI	GCTCTTC	1 cut(s)	399
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	1 cut(s)	485
Sau3AI	GATC	6 cut(s)	50, 166, 424, 574, 628, 724
Sau96I	GGNCC	3 cut(s)	152, 748, 925
ScrFI	CCNGG	2 cut(s)	193, 792
SduI	GDGCHC	1 cut(s)	472
SfaNI	GCATC	2 cut(s)	301, 384
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	3 cut(s)	152, 748, 925
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	2 cut(s)	92, 894
SmoI	CTYRAG	2 cut(s)	92, 894
Sse9I	AATT	4 cut(s)	326, 544, 624, 676
SsiI	CCGC	2 cut(s)	123, 373
SspI	AATATT	2 cut(s)	654, 862
SspMI	CTAG	3 cut(s)	488, 516, 585
StyD4I	CCNGG	2 cut(s)	191, 790
StyI	CCWWGG	1 cut(s)	559
TaaI	ACNGT	1 cut(s)	162
TaiI	ACGT	3 cut(s)	68, 365, 482
TaqI	TCGA	2 cut(s)	7, 866
TasI	AATT	4 cut(s)	326, 544, 624, 676
TfiI	GAWTC	1 cut(s)	665
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	459
TseI	GCWGC	1 cut(s)	484
TspDTI	ATGAA	2 cut(s)	864, 872
TspGWI	ACGGA	2 cut(s)	490, 684
TspRI	CASTG	1 cut(s)	459
VpaK11BI	GGWCC	3 cut(s)	152, 748, 925
XapI	RAATTY	1 cut(s)	676
XceI	RCATGY	2 cut(s)	31, 541
XspI	CTAG	3 cut(s)	488, 516, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.