AT5G41200
MADS Family

MADS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000326
Physical Location & Seq
Forward (+)
16490544 .. 16491536
993 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41200.1

Sequence Viewer

Length: 993 bp
ATGACTATGCGATCATCTTCACCTTCGTCCTCTTCTTCTTATTCACTCGCTTTCACAAGTTTGAGCAATAGGCTTGAGACCATCTTCAAGAAAGCTTCAGAGCTTTGCACTCTTTGTGATATCGAAGCCTGCGTTATCTATTACGGACCAGACGGAGAACTTAAGACATGGCCTAAGGAGAAAGAGAAAGTGAGAGACATTGCTCTTAGGTATAGTCTATTGAACGAAGCATTGAGACGCAAGAAAAGCGTTAATCTTCATGGGTTCCTGAACAAGAAGAAGAACAAGGGTTTGAAGAATCCGAACAAGAAGATGAAGACGAGTCTTAAGAACGTGAATATTTTAAAGTATCCACTCGCTGATCATTACCCTCCCGACCAAGTTTCTCCACTGATTCAGTCCTTGGAACTCCATGTCTCTAAATTCCAAGAAAGGCTTCGATTTCTTGAGTCGCAGAAACAGAATCAGACAAAACCGGATCATCAGAGTTTAACACCATCCTCTCTGAATCATTACACCCAATCTTTGAACCCTAGCCAGTTCTCGCTGTTTATGTATAACCATGGAGACAATACTCTGTCTCAGATCCCAGTCTCTGCATCAAATTTCAATCAGGATTATTTCTCAGCGTTACTTGAAGAATCTGAGTTGAAGAATCAGTTAATGAAGCCGGAGATTTGTGGTTATGATCAGAATCAGAACATGAGCATGGGTGACATCACAAACAACAAATTTCAAGATCCTTGCGTCTCAAACAAAGAAGCGGTACAAGAATCTGTCAACAACTTTGGGTTGAATCAATTGATGTACAAGGAGTTTTATGGTTGTGATCAAAACATGTCTATGGGTAACATCAATAGCAACAGCTTTCAAAATCCTTGCGTCTCAAACACACAACATTACTCGGCGGTAGAAGAATCTGTGAAGAACCCCTGGTTGAATCAGTTAATGCAGAATGAACTTTACGGTTACGGTTATGCAGGCTTTTGTTAA

Protein Analysis

330

Amino Acids

37.73

Weight (kDa)

8.28

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 19 - 57 1.5e-14 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18650 AT4G02235 AT4G11250 AT5G26865 AT5G26950 AT5G27050 AT5G27070 AT5G27090 AT5G27090 AT5G27580 AT5G27944 AT5G37415 AT5G37415 AT5G38740 AT5G39750 AT5G39810 AT5G40070 AT5G40120 AT5G40220 AT5G41200 AT5G55690 AT5G55690 AT5G58890 AT5G65330
fragaria_vesca FvH4_2g27520 FvH4_3g19300 FvH4_4g07700 FvH4_4g07700 FvH4_4g07700 FvH4_5g27070 FvH4_6g53490 FvH4_7g04141
malus_domestica MD02G1297800.v1.1 MD15G1430800.v1.1 MD17G1250500.v1.1
prunus_persica Prupe.2G110900_v2.0.a1 Prupe.3G148900_v2.0.a1 Prupe.3G306000_v2.0.a1 Prupe.7G030200_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G030800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G031800_v2.0.a1 Prupe.7G032000_v2.0.a1
pyrus_communis pycom02g25070 pycom06g01170 pycom09g17250 pycom111g00930 pycom15g38080
rosa_chinensis RchiOBHm_Chr2g0175531 RchiOBHm_Chr5g0016461 RchiOBHm_Chr6g0296351
rosa_laevigata RLG00000002414 RLG00000002417 RLG00000009181 RLG00000011703 RLG00000022336 RLG00000029928 RLG00000029934
rosa_multiflora Rmu_co8046860.1_g000001 Rmu_sc0000215.1_g000011 Rmu_sc0000215.1_g000020 Rmu_sc0000379.1_g000004 Rmu_sc0001478.1_g000006 Rmu_sc0002636.1_g000029 Rmu_sc0009440.1_g000006
rosa_roxburghii Rroxscaffold_2G00077230 Rroxscaffold_3G00241440 Rroxscaffold_5G00345600 Rroxscaffold_7G00171600 Rroxscaffold_7G00178500
rosa_rugosa Rorug02G0585900 Rorug04G0025700 Rorug06G0135200 Rorug06G0261200 Rorug06G0261300 Rorug06G0261400 Rorug07G0173300
rosa_samantha Rh1AG091800 Rh1AG093000 Rh1BG072700 Rh1CG088300 Rh1CG089800 Rh1CG090200 Rh1DG095900 Rh2AG665100 Rh2BG675900 Rh2CG639100 Rh2DG689900 Rh4AG103500 Rh4BG098600 Rh4CG111800 Rh4DG095500 Rh5AG126100 Rh5CG137400 Rh5DG124800 Rh5DG124900 Rh6AG373100 Rh6BG381200 Rh6CG386500 Rh6DG374000 Rh7AG315800 Rh7BG306000 Rh7CG333200 Rh7DG314000 Rh7DG314500
rosa_wichuraiana Rw2G054520 Rw4G008380 Rw5G010930 Rw6G032530 Rw7G026670 Rw7G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 764, 908
AclWI GGATC 3 cut(s) 486, 580, 734
AcsI RAATTY 3 cut(s) 422, 604, 731
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 2 cut(s) 768, 809
AflII CTTAAG 2 cut(s) 161, 326
AflIII ACRYGT 1 cut(s) 837
AjnI CCWGG 1 cut(s) 932
AjuI GAANNNNNNNTTGG 2 cut(s) 420, 452
AluBI AGCT 3 cut(s) 95, 103, 867
AluI AGCT 3 cut(s) 95, 103, 867
Alw26I GTCTC 9 cut(s) 71, 189, 229, 421, 561, 585, 598, 754, 889
AlwI GGATC 3 cut(s) 486, 580, 734
AlwNI CAGNNNCTG 1 cut(s) 596
AoxI GGCC 1 cut(s) 170
ApoI RAATTY 3 cut(s) 422, 604, 731
Asp700I GAANNNNTTC 1 cut(s) 435
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 2 cut(s) 12, 725
AvaII GGWCC 1 cut(s) 146
AxyI CCTNAGG 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 323
BccI CCATC 2 cut(s) 89, 505
BciT130I CCWGG 1 cut(s) 934
BciVI GTATCC 1 cut(s) 360
BclI TGATCA 3 cut(s) 361, 688, 829
BcoDI GTCTC 9 cut(s) 71, 189, 229, 421, 561, 585, 598, 754, 889
BfaI CTAG 1 cut(s) 534
BfrI CTTAAG 2 cut(s) 161, 326
BfuI GTATCC 1 cut(s) 360
Bme1390I CCNGG 1 cut(s) 934
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 266
BmrFI CCNGG 1 cut(s) 934
BmrI ACTGGG 1 cut(s) 584
BmsI GCATC 1 cut(s) 608
BmuI ACTGGG 1 cut(s) 584
BpiI GAAGAC 1 cut(s) 323
BpuEI CTTGAG 2 cut(s) 95, 467
BsaBI GATNNNNATC 1 cut(s) 693
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 3 cut(s) 402, 562, 932
BsaWI WCCGGW 1 cut(s) 475
Bse1I ACTGG 2 cut(s) 538, 590
Bse21I CCTNAGG 1 cut(s) 174
Bse3DI GCAATG 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 693
BseBI CCWGG 1 cut(s) 934
BseDI CCNNGG 3 cut(s) 402, 562, 932
BseGI GGATG 1 cut(s) 497
BseJI GATNNNNATC 1 cut(s) 693
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 3 cut(s) 596, 636, 639
BseNI ACTGG 2 cut(s) 538, 590
BshFI GGCC 1 cut(s) 172
BsiSI CCGG 2 cut(s) 476, 671
BsmAI GTCTC 9 cut(s) 71, 189, 229, 421, 561, 585, 598, 754, 889
BsmBI CGTCTC 3 cut(s) 229, 754, 889
BsnI GGCC 1 cut(s) 172
Bso31I GGTCTC 1 cut(s) 71
Bsp1407I TGTACA 1 cut(s) 807
Bsp143I GATC 7 cut(s) 11, 361, 478, 585, 688, 739, 829
Bsp19I CCATGG 1 cut(s) 562
BspACI CCGC 2 cut(s) 764, 908
BspANI GGCC 1 cut(s) 172
BspCNI CTCAG 3 cut(s) 595, 637, 638
BspLI GGNNCC 1 cut(s) 266
BspPI GGATC 3 cut(s) 486, 580, 734
BspTI CTTAAG 2 cut(s) 161, 326
BspTNI GGTCTC 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 198
BsrGI TGTACA 1 cut(s) 807
BsrI ACTGG 2 cut(s) 538, 590
BssECI CCNNGG 3 cut(s) 402, 562, 932
BssMI GATC 7 cut(s) 11, 361, 478, 585, 688, 739, 829
BssT1I CCWWGG 2 cut(s) 402, 562
Bst2UI CCWGG 1 cut(s) 934
Bst4CI ACNGT 2 cut(s) 968, 974
Bst6I CTCTTC 1 cut(s) 37
BstAFI CTTAAG 2 cut(s) 161, 326
BstAUI TGTACA 1 cut(s) 807
BstC8I GCNNGC 2 cut(s) 130, 982
BstDEI CTNAG 5 cut(s) 174, 206, 582, 625, 645
BstDSI CCRYGG 1 cut(s) 562
BstF5I GGATG 1 cut(s) 497
BstKTI GATC 7 cut(s) 14, 364, 481, 588, 691, 742, 832
BstMAI GTCTC 9 cut(s) 71, 189, 229, 421, 561, 585, 598, 754, 889
BstMBI GATC 7 cut(s) 11, 361, 478, 585, 688, 739, 829
BstMWI GCNNNNNNNGC 1 cut(s) 246
BstNI CCWGG 1 cut(s) 934
BstNSI RCATGY 1 cut(s) 841
BstSCI CCNGG 1 cut(s) 932
BstV2I GAAGAC 1 cut(s) 323
BstX2I RGATCY 2 cut(s) 585, 739
BstYI RGATCY 2 cut(s) 585, 739
Bsu36I CCTNAGG 1 cut(s) 174
BsuI GTATCC 1 cut(s) 360
BsuRI GGCC 1 cut(s) 172
BtgI CCRYGG 1 cut(s) 562
BtsCI GGATG 1 cut(s) 497
BtsIMutI CAGTG 1 cut(s) 389
Cac8I GCNNGC 2 cut(s) 130, 982
CaiI CAGNNNCTG 1 cut(s) 596
Cfr13I GGNCC 1 cut(s) 146
CseI GACGC 3 cut(s) 246, 736, 871
Csp6I GTAC 2 cut(s) 767, 808
CviAII CATG 7 cut(s) 168, 260, 413, 563, 703, 709, 838
CviQI GTAC 2 cut(s) 767, 808
DdeI CTNAG 5 cut(s) 174, 206, 582, 625, 645
DpnI GATC 7 cut(s) 13, 363, 480, 587, 690, 741, 831
DpnII GATC 7 cut(s) 11, 361, 478, 585, 688, 739, 829
DraI TTTAAA 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Eco130I CCWWGG 2 cut(s) 402, 562
Eco31I GGTCTC 1 cut(s) 71
Eco32I GATATC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 81
Eco81I CCTNAGG 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 932
EcoRV GATATC 1 cut(s) 121
EcoT14I CCWWGG 2 cut(s) 402, 562
ErhI CCWWGG 2 cut(s) 402, 562
Esp3I CGTCTC 3 cut(s) 229, 754, 889
FaeI CATG 7 cut(s) 171, 263, 416, 566, 706, 712, 841
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FatI CATG 7 cut(s) 167, 259, 412, 562, 702, 708, 837
FbaI TGATCA 3 cut(s) 361, 688, 829
FokI GGATG 1 cut(s) 484
FspBI CTAG 1 cut(s) 534
HaeIII GGCC 1 cut(s) 172
HapII CCGG 2 cut(s) 476, 671
HgaI GACGC 3 cut(s) 246, 736, 871
Hin1II CATG 7 cut(s) 171, 263, 416, 566, 706, 712, 841
HincII GTYRAC 1 cut(s) 781
HindII GTYRAC 1 cut(s) 781
HindIII AAGCTT 1 cut(s) 93
HpaII CCGG 2 cut(s) 476, 671
HphI GGTGA 2 cut(s) 12, 725
Hpy166II GTNNAC 1 cut(s) 781
Hpy188I TCNGA 9 cut(s) 100, 303, 468, 486, 507, 585, 646, 693, 699
Hpy188III TCNNGA 6 cut(s) 88, 268, 374, 446, 614, 737
Hpy8I GTNNAC 1 cut(s) 781
HpyAV CCTTC 1 cut(s) 33
HpyCH4III ACNGT 2 cut(s) 968, 974
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 4 cut(s) 108, 599, 952, 980
HpyF10VI GCNNNNNNNGC 1 cut(s) 246
HpyF3I CTNAG 5 cut(s) 174, 206, 582, 625, 645
HpySE526I ACGT 1 cut(s) 333
Hsp92II CATG 7 cut(s) 171, 263, 416, 566, 706, 712, 841
Ksp22I TGATCA 3 cut(s) 361, 688, 829
Kzo9I GATC 7 cut(s) 11, 361, 478, 585, 688, 739, 829
LweI GCATC 1 cut(s) 608
MaeI CTAG 1 cut(s) 534
MaeII ACGT 1 cut(s) 333
MaeIII GTNAC 4 cut(s) 630, 713, 848, 968
MalI GATC 7 cut(s) 13, 363, 480, 587, 690, 741, 831
MboI GATC 7 cut(s) 11, 361, 478, 585, 688, 739, 829
MfeI CAATTG 1 cut(s) 800
MflI RGATCY 2 cut(s) 585, 739
MluCI AATT 4 cut(s) 422, 604, 731, 800
MlyI GAGTC 2 cut(s) 331, 458
MnlI CCTC 3 cut(s) 40, 381, 511
MroXI GAANNNNTTC 1 cut(s) 435
MseI TTAA 8 cut(s) 162, 252, 327, 344, 491, 662, 947, 991
MslI CAYNNNNRTG 2 cut(s) 707, 842
MspCI CTTAAG 2 cut(s) 161, 326
MspI CCGG 2 cut(s) 476, 671
MspR9I CCNGG 1 cut(s) 934
MunI CAATTG 1 cut(s) 800
MvaI CCWGG 1 cut(s) 934
MwoI GCNNNNNNNGC 1 cut(s) 246
NcoI CCATGG 1 cut(s) 562
NdeII GATC 7 cut(s) 11, 361, 478, 585, 688, 739, 829
NlaIII CATG 7 cut(s) 171, 263, 416, 566, 706, 712, 841
NlaIV GGNNCC 1 cut(s) 266
NmeAIII GCCGAG 1 cut(s) 884
NmuCI GTSAC 1 cut(s) 713
NspI RCATGY 1 cut(s) 841
PciI ACATGT 1 cut(s) 837
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 435
PleI GAGTC 2 cut(s) 330, 457
PpsI GAGTC 2 cut(s) 330, 457
PscI ACATGT 1 cut(s) 837
Psp6I CCWGG 1 cut(s) 932
PspGI CCWGG 1 cut(s) 932
PspN4I GGNNCC 1 cut(s) 266
PspPI GGNCC 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 596
PsuI RGATCY 2 cut(s) 585, 739
RsaI GTAC 2 cut(s) 768, 809
RsaNI GTAC 2 cut(s) 767, 808
RseI CAYNNNNRTG 2 cut(s) 707, 842
SaqAI TTAA 8 cut(s) 162, 252, 327, 344, 491, 662, 947, 991
Sau3AI GATC 7 cut(s) 11, 361, 478, 585, 688, 739, 829
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 2 cut(s) 331, 458
ScrFI CCNGG 1 cut(s) 934
SetI ASST 6 cut(s) 25, 97, 105, 212, 336, 869
SfaNI GCATC 1 cut(s) 608
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 2 cut(s) 707, 842
SmlI CTYRAG 4 cut(s) 74, 161, 326, 446
SmoI CTYRAG 4 cut(s) 74, 161, 326, 446
Sse9I AATT 4 cut(s) 422, 604, 731, 800
SsiI CCGC 2 cut(s) 764, 908
SspI AATATT 1 cut(s) 340
SspMI CTAG 1 cut(s) 534
StyD4I CCNGG 1 cut(s) 932
StyI CCWWGG 2 cut(s) 402, 562
TaaI ACNGT 2 cut(s) 968, 974
TaiI ACGT 1 cut(s) 336
TaqI TCGA 2 cut(s) 123, 439
TasI AATT 4 cut(s) 422, 604, 731, 800
TatI WGTACW 1 cut(s) 807
Tru1I TTAA 8 cut(s) 162, 252, 327, 344, 491, 662, 947, 991
Tru9I TTAA 8 cut(s) 162, 252, 327, 344, 491, 662, 947, 991
TscAI CASTG 1 cut(s) 396
TseFI GTSAC 1 cut(s) 713
Tsp45I GTSAC 1 cut(s) 713
TspDTI ATGAA 4 cut(s) 248, 329, 680, 972
TspGWI ACGGA 2 cut(s) 159, 168
TspRI CASTG 1 cut(s) 396
Vha464I CTTAAG 2 cut(s) 161, 326
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 3 cut(s) 422, 604, 731
XceI RCATGY 1 cut(s) 841
XmnI GAANNNNTTC 1 cut(s) 435
XspI CTAG 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.