Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000132

Physical Location & Seq

Genomic Coordinates Reverse (-)

40768441 .. 40771626

Gene Structure 3186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0261200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGATGAACAACCATCTACAAGCAAAGATGAGGATATGATAGAGAGTTCAAATGGGAAAGAAGCAGCCACATTTGAGGTGAGTTCAGATATGGAACCATATGTGGGTATGGAGTTTGAAACGGAAGAGGCTGCCAAGGTGTTCTATGATGCATATGCAACACAGTTGGGATTCATTATGCGGGTTGATGCCTTCCGGAGATCATTGCGTGATGGTAAGGTAGTTTGGCGTAGACTTGTGTGCAATAAAGAAGGATTTCGTAAGACGAGGCCCAAAAGAAGTGAGAACAGGAAGCCTCGGGCAATCACGAGAGAAGGGTGTAAAGCAATGATAGTGGTAAAGAGAGAAAAATCAGGAAAATGGATTGTAACGAGATTTATAAAGGACCATAACCATTCACTGGTAGTTACACCTGCAAATGGTCGCCGGACTGTGATTCTATCTCAAACACCAGTGAGTCCTCATTGCTCAATAAGCTTTCTCATTCTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SWIRM SWIRM-assoc_1

Protein Analysis

164

Amino Acids

18.8

Weight (kDa)

9.48

Isoelectric Point (pI)

55.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	48 - 135	1.1e-32	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000132)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica	MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica	Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis	pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis	RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata	RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora	Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa	Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha	Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana	Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	380
AarI	CACCTGC	1 cut(s)	421
Acc36I	ACCTGC	1 cut(s)	421
AccB7I	CCANNNNNTGG	1 cut(s)	400
AccI	GTMKAC	1 cut(s)	232
AccIII	TCCGGA	1 cut(s)	195
AciI	CCGC	1 cut(s)	181
AfiI	CCNNNNNNNGG	3 cut(s)	104, 400, 419
AgsI	TTSAA	2 cut(s)	51, 119
AluBI	AGCT	1 cut(s)	477
AluI	AGCT	1 cut(s)	477
Ama87I	CYCGRG	1 cut(s)	297
Aor13HI	TCCGGA	1 cut(s)	195
AoxI	GGCC	1 cut(s)	269
ApeKI	GCWGC	2 cut(s)	65, 131
Asp700I	GAANNNNTTC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	270, 385
AsuHPI	GGTGA	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	297
AvaII	GGWCC	1 cut(s)	385
BauI	CACGAG	1 cut(s)	307
BbvI	GCAGC	2 cut(s)	77, 118
BccI	CCATC	2 cut(s)	22, 206
BfuAI	ACCTGC	1 cut(s)	421
BisI	GCNGC	2 cut(s)	66, 132
BlsI	GCNGC	2 cut(s)	67, 133
Bme18I	GGWCC	1 cut(s)	385
BmeT110I	CYCGRG	1 cut(s)	297
BmgT120I	GGNCC	2 cut(s)	270, 385
BmiI	GGNNCC	1 cut(s)	96
BmsI	GCATC	2 cut(s)	139, 178
BsaJI	CCNNGG	2 cut(s)	135, 296
BsaWI	WCCGGW	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 400, 419
Bse1I	ACTGG	2 cut(s)	405, 452
Bse3DI	GCAATG	3 cut(s)	203, 333, 463
BseAI	TCCGGA	1 cut(s)	195
BseDI	CCNNGG	2 cut(s)	135, 296
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	3 cut(s)	104, 400, 419
BseMI	GCAATG	3 cut(s)	203, 333, 463
BseNI	ACTGG	2 cut(s)	405, 452
BseXI	GCAGC	2 cut(s)	77, 118
BshFI	GGCC	1 cut(s)	271
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	2 cut(s)	196, 427
BslI	CCNNNNNNNGG	3 cut(s)	104, 400, 419
BsnI	GGCC	1 cut(s)	271
BsoBI	CYCGRG	1 cut(s)	297
Bsp13I	TCCGGA	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	200
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	1 cut(s)	271
BspEI	TCCGGA	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	96
BspMI	ACCTGC	1 cut(s)	421
BsrDI	GCAATG	3 cut(s)	203, 333, 463
BsrI	ACTGG	2 cut(s)	405, 452
BssECI	CCNNGG	2 cut(s)	135, 296
BssMI	GATC	1 cut(s)	200
BssSI	CACGAG	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	307
Bst4CI	ACNGT	2 cut(s)	165, 433
Bst6I	CTCTTC	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	203
BstMBI	GATC	1 cut(s)	200
BstMWI	GCNNNNNNNGC	1 cut(s)	474
BstV1I	GCAGC	2 cut(s)	77, 118
BsuRI	GGCC	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	2 cut(s)	398, 459
BveI	ACCTGC	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	270, 385
CspCI	CAANNNNNGTGG	2 cut(s)	315, 350
CviJI	RGCY	5 cut(s)	68, 131, 271, 295, 477
CviKI_1	RGCY	5 cut(s)	68, 131, 271, 295, 477
DpnI	GATC	1 cut(s)	202
DpnII	GATC	1 cut(s)	200
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	385
Eco88I	CYCGRG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	135
EcoT22I	ATGCAT	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	135
FauI	CCCGC	1 cut(s)	174
FauNDI	CATATG	2 cut(s)	100, 154
FblI	GTMKAC	1 cut(s)	232
Fnu4HI	GCNGC	2 cut(s)	66, 132
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	66, 132
GluI	GCNGC	2 cut(s)	66, 132
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	2 cut(s)	196, 427
HindIII	AAGCTT	1 cut(s)	475
HinfI	GANTC	3 cut(s)	171, 436, 457
HpaII	CCGG	2 cut(s)	196, 427
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	3 cut(s)	196, 307, 354
Hpy8I	GTNNAC	1 cut(s)	233
HpyAV	CCTTC	3 cut(s)	202, 245, 308
HpyCH4III	ACNGT	2 cut(s)	165, 433
HpyCH4V	TGCA	4 cut(s)	152, 158, 243, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	474
Kpn2I	TCCGGA	1 cut(s)	195
Kzo9I	GATC	1 cut(s)	200
LpnPI	CCDG	7 cut(s)	209, 274, 339, 386, 426, 440, 465
Lsp1109I	GCAGC	2 cut(s)	77, 118
LweI	GCATC	2 cut(s)	139, 178
MaeIII	GTNAC	2 cut(s)	367, 406
MalI	GATC	1 cut(s)	202
MboI	GATC	1 cut(s)	200
MboII	GAAGA	1 cut(s)	137
MluCI	AATT	1 cut(s)	489
MlyI	GAGTC	1 cut(s)	466
MnlI	CCTC	6 cut(s)	25, 70, 121, 261, 306, 471
Mph1103I	ATGCAT	1 cut(s)	154
MroI	TCCGGA	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	255
MspI	CCGG	2 cut(s)	196, 427
MwoI	GCNNNNNNNGC	1 cut(s)	474
NdeI	CATATG	2 cut(s)	100, 154
NdeII	GATC	1 cut(s)	200
NlaIV	GGNNCC	1 cut(s)	96
NsiI	ATGCAT	1 cut(s)	154
PaqCI	CACCTGC	1 cut(s)	421
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	171, 436
PflMI	CCANNNNNTGG	1 cut(s)	400
PkrI	GCNGC	2 cut(s)	67, 133
PleI	GAGTC	1 cut(s)	465
PpsI	GAGTC	1 cut(s)	465
PsiI	TTATAA	1 cut(s)	380
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	270, 385
SatI	GCNGC	2 cut(s)	66, 132
Sau3AI	GATC	1 cut(s)	200
Sau96I	GGNCC	2 cut(s)	270, 385
SchI	GAGTC	1 cut(s)	466
SetI	ASST	5 cut(s)	81, 141, 222, 415, 479
SfaNI	GCATC	2 cut(s)	139, 178
SinI	GGWCC	1 cut(s)	385
Sse9I	AATT	1 cut(s)	489
SsiI	CCGC	1 cut(s)	181
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	165, 433
TasI	AATT	1 cut(s)	489
TfiI	GAWTC	2 cut(s)	171, 436
TscAI	CASTG	2 cut(s)	405, 459
TseI	GCWGC	2 cut(s)	65, 131
TspDTI	ATGAA	2 cut(s)	21, 163
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	2 cut(s)	405, 459
Van91I	CCANNNNNTGG	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	232
XmnI	GAANNNNTTC	1 cut(s)	255
Zsp2I	ATGCAT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.