RchiOBHm_Chr5g0043061

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000132
Physical Location & Seq
Reverse (-)
37839684 .. 37840456
773 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32139

Sequence Viewer

Length: 669 bp
ATGGTTTTTTCTGATATTTTTAGCGGTGGGAGTGAGACATCAGCTACAACTGTAGATTGGGCAATGTCAGAACTGACAAATCATCCGAGAATCATGCAGAGGCCACAGGATGAGGTGAGGGAAGTGTATGACAAAACACAACAGGTGAACGAAACGGGCATCAAAGAGATGAAATATTTAAAGATGGTTATTCAAGAGACACTGAGGTTACACCCTGTTGTTCCCTTGTTACTTCCACGAGAATGTGGAGAGAGGTGTGAGAATGATGGATATGAAATACCTGTCAAAACAAAGGTAATTGTGAATTCTTGGGCAATTGGAGGAGATCCCAGTTACTGGACTGAGCCCGAGACCTTTTATCCTGAGAGATTCCTTGATAGCTCTACTAACTACCGAGGAACAAACTTTGAGTATATCCCATTTGGCTTTGGAAGTAGAATTTTCCCTGGCATATTATATGGTCTGGCTAATGTTGAGATCCCGCTAGCATTGCTGTTATATCATTTTGATTGGAAACTCCCCAATGGAATGAAGAATGAAGACTTGGACATGACTGAGGACTTTGGCATTGCAGTCCGCAGAAAAGAAGATCTTCATTTGATTCCCACCCCATATCATCCCTCCGCCTGGTGCGCCAAATTCGAAAGTAGAATTAAGTTAAGGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

222

Amino Acids

25.69

Weight (kDa)

5.21

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 4 - 196 4.3e-55 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 336
AciI CCGC 4 cut(s) 24, 482, 577, 624
AclWI GGATC 2 cut(s) 320, 472
AcsI RAATTY 3 cut(s) 304, 438, 638
AfiI CCNNNNNNNGG 2 cut(s) 336, 627
AgsI TTSAA 1 cut(s) 194
AjnI CCWGG 2 cut(s) 445, 626
AjuI GAANNNNNNNTTGG 2 cut(s) 527, 559
AluBI AGCT 2 cut(s) 44, 381
AluI AGCT 2 cut(s) 44, 381
Alw26I GTCTC 3 cut(s) 29, 191, 344
AlwI GGATC 2 cut(s) 320, 472
AlwNI CAGNNNCTG 1 cut(s) 336
Ama87I CYCGRG 1 cut(s) 347
AoxI GGCC 1 cut(s) 101
ApoI RAATTY 3 cut(s) 304, 438, 638
Asp700I GAANNNNTTC 1 cut(s) 591
AspLEI GCGC 1 cut(s) 635
AsuHPI GGTGA 2 cut(s) 127, 157
AsuII TTCGAA 1 cut(s) 642
AsuNHI GCTAGC 1 cut(s) 484
AvaI CYCGRG 1 cut(s) 347
BanII GRGCYC 1 cut(s) 348
BauI CACGAG 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 546
BccI CCATC 2 cut(s) 178, 260
BcgI CGANNNNNNTGC 2 cut(s) 76, 110
BciT130I CCWGG 2 cut(s) 447, 628
BcoDI GTCTC 3 cut(s) 29, 191, 344
BfaI CTAG 1 cut(s) 485
BfmI CTRYAG 1 cut(s) 51
BglII AGATCT 1 cut(s) 589
Bme1390I CCNGG 2 cut(s) 447, 628
BmeT110I CYCGRG 1 cut(s) 347
BmrFI CCNGG 2 cut(s) 447, 628
BmrI ACTGGG 1 cut(s) 324
BmsI GCATC 1 cut(s) 168
BmtI GCTAGC 1 cut(s) 488
BmuI ACTGGG 1 cut(s) 324
BpiI GAAGAC 1 cut(s) 546
Bpu14I TTCGAA 1 cut(s) 642
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 2 cut(s) 394, 445
Bsc4I CCNNNNNNNGG 2 cut(s) 336, 627
Bse1I ACTGG 2 cut(s) 330, 341
Bse3DI GCAATG 3 cut(s) 69, 488, 567
BseBI CCWGG 2 cut(s) 447, 628
BseDI CCNNGG 2 cut(s) 394, 445
BseGI GGATG 3 cut(s) 82, 115, 616
BseLI CCNNNNNNNGG 2 cut(s) 336, 627
BseMI GCAATG 3 cut(s) 69, 488, 567
BseMII CTCAG 4 cut(s) 194, 333, 354, 546
BseNI ACTGG 2 cut(s) 330, 341
BseRI GAGGAG 1 cut(s) 336
BshFI GGCC 1 cut(s) 103
BsiHKCI CYCGRG 1 cut(s) 347
BslI CCNNNNNNNGG 2 cut(s) 336, 627
BsmAI GTCTC 3 cut(s) 29, 191, 344
BsnI GGCC 1 cut(s) 103
Bso31I GGTCTC 1 cut(s) 344
BsoBI CYCGRG 1 cut(s) 347
Bsp119I TTCGAA 1 cut(s) 642
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 3 cut(s) 325, 477, 589
BspACI CCGC 4 cut(s) 24, 482, 577, 624
BspANI GGCC 1 cut(s) 103
BspCNI CTCAG 4 cut(s) 195, 334, 355, 547
BspOI GCTAGC 1 cut(s) 488
BspPI GGATC 2 cut(s) 320, 472
BspT104I TTCGAA 1 cut(s) 642
BspTNI GGTCTC 1 cut(s) 344
BsrDI GCAATG 3 cut(s) 69, 488, 567
BsrI ACTGG 2 cut(s) 330, 341
BssECI CCNNGG 2 cut(s) 394, 445
BssMI GATC 3 cut(s) 325, 477, 589
BssSI CACGAG 1 cut(s) 237
Bst2BI CACGAG 1 cut(s) 237
Bst2UI CCWGG 2 cut(s) 447, 628
Bst4CI ACNGT 1 cut(s) 52
BstBI TTCGAA 1 cut(s) 642
BstC8I GCNNGC 1 cut(s) 486
BstDEI CTNAG 4 cut(s) 203, 342, 363, 555
BstF5I GGATG 3 cut(s) 82, 115, 616
BstHHI GCGC 1 cut(s) 635
BstKTI GATC 3 cut(s) 328, 480, 592
BstMAI GTCTC 3 cut(s) 29, 191, 344
BstMBI GATC 3 cut(s) 325, 477, 589
BstMWI GCNNNNNNNGC 2 cut(s) 490, 632
BstNI CCWGG 2 cut(s) 447, 628
BstSCI CCNGG 2 cut(s) 445, 626
BstSFI CTRYAG 1 cut(s) 51
BstV2I GAAGAC 1 cut(s) 546
BstX2I RGATCY 3 cut(s) 325, 477, 589
BstYI RGATCY 3 cut(s) 325, 477, 589
BsuRI GGCC 1 cut(s) 103
BtsCI GGATG 3 cut(s) 82, 115, 616
BtsIMutI CAGTG 1 cut(s) 200
Cac8I GCNNGC 1 cut(s) 486
CaiI CAGNNNCTG 1 cut(s) 336
CfoI GCGC 1 cut(s) 635
CviAII CATG 2 cut(s) 94, 550
CviJI RGCY 6 cut(s) 44, 103, 346, 381, 426, 467
CviKI_1 RGCY 6 cut(s) 44, 103, 346, 381, 426, 467
DdeI CTNAG 4 cut(s) 203, 342, 363, 555
DpnI GATC 3 cut(s) 327, 479, 591
DpnII GATC 3 cut(s) 325, 477, 589
DraI TTTAAA 1 cut(s) 180
EciI GGCGGA 1 cut(s) 613
Eco24I GRGCYC 1 cut(s) 348
Eco31I GGTCTC 1 cut(s) 344
Eco88I CYCGRG 1 cut(s) 347
EcoRI GAATTC 1 cut(s) 304
EcoRII CCWGG 2 cut(s) 445, 626
EcoT38I GRGCYC 1 cut(s) 348
FaeI CATG 2 cut(s) 97, 553
FalI AAGNNNNNCTT 2 cut(s) 576, 608
FatI CATG 2 cut(s) 93, 549
FauI CCCGC 1 cut(s) 489
FokI GGATG 3 cut(s) 69, 122, 603
FriOI GRGCYC 1 cut(s) 348
FspBI CTAG 1 cut(s) 485
GlaI GCGC 1 cut(s) 634
HaeIII GGCC 1 cut(s) 103
HhaI GCGC 1 cut(s) 635
Hin1II CATG 2 cut(s) 97, 553
Hin6I GCGC 1 cut(s) 633
HinP1I GCGC 1 cut(s) 633
HinfI GANTC 3 cut(s) 90, 369, 601
HphI GGTGA 2 cut(s) 127, 157
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 3 cut(s) 13, 70, 87
Hpy188III TCNNGA 2 cut(s) 194, 362
Hpy8I GTNNAC 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 2 cut(s) 97, 572
HpyF10VI GCNNNNNNNGC 2 cut(s) 490, 632
HpyF3I CTNAG 4 cut(s) 203, 342, 363, 555
Hsp92II CATG 2 cut(s) 97, 553
HspAI GCGC 1 cut(s) 633
Kzo9I GATC 3 cut(s) 325, 477, 589
LweI GCATC 1 cut(s) 168
MaeI CTAG 1 cut(s) 485
MaeIII GTNAC 3 cut(s) 207, 228, 332
MalI GATC 3 cut(s) 327, 479, 591
MboI GATC 3 cut(s) 325, 477, 589
MboII GAAGA 4 cut(s) 544, 551, 584, 599
MfeI CAATTG 1 cut(s) 315
MflI RGATCY 3 cut(s) 325, 477, 589
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 6 cut(s) 297, 304, 315, 438, 638, 651
MnlI CCTC 9 cut(s) 93, 106, 111, 198, 246, 314, 389, 550, 631
MroXI GAANNNNTTC 1 cut(s) 591
MseI TTAA 3 cut(s) 179, 654, 659
MslI CAYNNNNRTG 1 cut(s) 241
MspR9I CCNGG 2 cut(s) 447, 628
MunI CAATTG 1 cut(s) 315
MvaI CCWGG 2 cut(s) 447, 628
MwoI GCNNNNNNNGC 2 cut(s) 490, 632
NdeII GATC 3 cut(s) 325, 477, 589
NheI GCTAGC 1 cut(s) 484
NlaIII CATG 2 cut(s) 97, 553
NspV TTCGAA 1 cut(s) 642
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 3 cut(s) 90, 369, 601
PflMI CCANNNNNTGG 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 445, 626
PspGI CCWGG 2 cut(s) 445, 626
PstNI CAGNNNCTG 1 cut(s) 336
PsuI RGATCY 3 cut(s) 325, 477, 589
RseI CAYNNNNRTG 1 cut(s) 241
SaqAI TTAA 3 cut(s) 179, 654, 659
Sau3AI GATC 3 cut(s) 325, 477, 589
ScrFI CCNGG 2 cut(s) 447, 628
SduI GDGCHC 1 cut(s) 348
SetI ASST 9 cut(s) 46, 117, 147, 209, 257, 283, 297, 356, 383
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 1 cut(s) 51
SfuI TTCGAA 1 cut(s) 642
SmiMI CAYNNNNRTG 1 cut(s) 241
Sse9I AATT 6 cut(s) 297, 304, 315, 438, 638, 651
SsiI CCGC 4 cut(s) 24, 482, 577, 624
SspI AATATT 1 cut(s) 176
SspMI CTAG 1 cut(s) 485
StyD4I CCNGG 2 cut(s) 445, 626
TaaI ACNGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 642
TasI AATT 6 cut(s) 297, 304, 315, 438, 638, 651
TfiI GAWTC 3 cut(s) 90, 369, 601
Tru1I TTAA 3 cut(s) 179, 654, 659
Tru9I TTAA 3 cut(s) 179, 654, 659
TscAI CASTG 1 cut(s) 207
TspDTI ATGAA 5 cut(s) 185, 288, 545, 552, 584
TspRI CASTG 1 cut(s) 207
Van91I CCANNNNNTGG 1 cut(s) 336
XapI RAATTY 3 cut(s) 304, 438, 638
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.