RchiOBHm_Chr5g0054561

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
57161435 .. 57161881
447 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33169

Sequence Viewer

Length: 447 bp
ATGTTTTTAAAGATATTTGGAAGTCACAAAACTAGCAATTTGATTCAAAGGCTACCTCTAGGGCCATGGAAACTACCTATCATCGGAAACATGCACCATCTTGTCGGTTCTTTGCCCTATCACATCTTGAGAAATTTGGCTAACATCTCTGGACCTTTATGCACTTGCAGCTTGGTGAAGTTTCCACTGTTGTTGTTTCCACACCAAAAGCTAGCCGCCAAAGAGATTATGAGAACAAATGACAACATCTTCGCTTTCAGGCCCCTCCTGCTTGCTCCGGATATCATCTCTTATAGCGGTGCAAGCATTGGCTTTGCACCATATAGAGAATACTGGAGACAGATGTGCAAGATCTGCGGTTTAGTGCTGCTAAACTCAACAAGGATGGATTCATTCAATGGATTAGAGAAGAAGAGGTATCTCATTTGCTCGAATTCATTCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

16.84

Weight (kDa)

9.82

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 277
AciI CCGC 3 cut(s) 216, 297, 357
AcsI RAATTY 2 cut(s) 133, 433
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 2 cut(s) 47, 397
AluBI AGCT 2 cut(s) 171, 211
AluI AGCT 2 cut(s) 171, 211
Alw26I GTCTC 1 cut(s) 331
Aor13HI TCCGGA 1 cut(s) 277
AoxI GGCC 2 cut(s) 62, 260
ApeKI GCWGC 2 cut(s) 168, 367
ApoI RAATTY 2 cut(s) 133, 433
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
Asp700I GAANNNNTTC 1 cut(s) 437
AspS9I GGNCC 3 cut(s) 62, 152, 261
AsuHPI GGTGA 1 cut(s) 187
AsuNHI GCTAGC 1 cut(s) 211
AvaII GGWCC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 180, 354
BccI CCATC 2 cut(s) 105, 379
BcoDI GTCTC 1 cut(s) 331
BfaI CTAG 3 cut(s) 33, 59, 212
BglII AGATCT 1 cut(s) 351
BisI GCNGC 3 cut(s) 169, 216, 368
BlsI GCNGC 3 cut(s) 170, 217, 369
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 3 cut(s) 62, 152, 261
BmiI GGNNCC 1 cut(s) 263
BmtI GCTAGC 1 cut(s) 215
BpmI CTGGAG 1 cut(s) 355
BpuEI CTTGAG 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 65
BsaWI WCCGGW 1 cut(s) 277
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 338
BseAI TCCGGA 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 1 cut(s) 390
BseLI CCNNNNNNNGG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 338
BseXI GCAGC 2 cut(s) 180, 354
BshFI GGCC 2 cut(s) 64, 262
BsiSI CCGG 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 331
BsnI GGCC 2 cut(s) 64, 262
Bsp13I TCCGGA 1 cut(s) 277
Bsp143I GATC 1 cut(s) 351
Bsp19I CCATGG 1 cut(s) 65
BspACI CCGC 3 cut(s) 216, 297, 357
BspANI GGCC 2 cut(s) 64, 262
BspEI TCCGGA 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 263
BspOI GCTAGC 1 cut(s) 215
BsrI ACTGG 1 cut(s) 338
BssECI CCNNGG 1 cut(s) 65
BssMI GATC 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 189
Bst6I CTCTTC 1 cut(s) 407
BstAPI GCANNNNNTGC 1 cut(s) 354
BstC8I GCNNGC 3 cut(s) 213, 273, 304
BstDSI CCRYGG 1 cut(s) 65
BstF5I GGATG 1 cut(s) 390
BstKTI GATC 1 cut(s) 354
BstMAI GTCTC 1 cut(s) 331
BstMBI GATC 1 cut(s) 351
BstMWI GCNNNNNNNGC 4 cut(s) 168, 268, 303, 354
BstNSI RCATGY 1 cut(s) 94
BstV1I GCAGC 2 cut(s) 180, 354
BstX2I RGATCY 1 cut(s) 351
BstYI RGATCY 1 cut(s) 351
BsuRI GGCC 2 cut(s) 64, 262
BtgI CCRYGG 1 cut(s) 65
BtsCI GGATG 1 cut(s) 390
BtsIMutI CAGTG 1 cut(s) 185
Cac8I GCNNGC 3 cut(s) 213, 273, 304
Cfr13I GGNCC 3 cut(s) 62, 152, 261
CspCI CAANNNNNGTGG 2 cut(s) 174, 209
CviAII CATG 2 cut(s) 66, 91
CviJI RGCY 8 cut(s) 52, 64, 140, 171, 211, 215, 262, 312
CviKI_1 RGCY 8 cut(s) 52, 64, 140, 171, 211, 215, 262, 312
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
DraI TTTAAA 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Eco130I CCWWGG 1 cut(s) 65
Eco32I GATATC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 261
EcoRI GAATTC 1 cut(s) 433
EcoRV GATATC 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 2 cut(s) 69, 94
FaiI YATR 7 cut(s) 67, 92, 160, 230, 294, 322, 324
FatI CATG 2 cut(s) 65, 90
Fnu4HI GCNGC 3 cut(s) 169, 216, 368
FokI GGATG 1 cut(s) 397
Fsp4HI GCNGC 3 cut(s) 169, 216, 368
FspBI CTAG 3 cut(s) 33, 59, 212
GluI GCNGC 3 cut(s) 169, 216, 368
GsuI CTGGAG 1 cut(s) 355
HaeIII GGCC 2 cut(s) 64, 262
HapII CCGG 1 cut(s) 278
Hin1II CATG 2 cut(s) 69, 94
HinfI GANTC 2 cut(s) 43, 389
HpaII CCGG 1 cut(s) 278
HphI GGTGA 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 86
Hpy188III TCNNGA 3 cut(s) 127, 150, 278
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4V TGCA 6 cut(s) 94, 162, 168, 302, 317, 348
HpyF10VI GCNNNNNNNGC 4 cut(s) 168, 268, 303, 354
Hsp92II CATG 2 cut(s) 69, 94
Kpn2I TCCGGA 1 cut(s) 277
Kzo9I GATC 1 cut(s) 351
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 5 cut(s) 135, 244, 281, 291, 319
Lsp1109I GCAGC 2 cut(s) 180, 354
MaeI CTAG 3 cut(s) 33, 59, 212
MaeIII GTNAC 1 cut(s) 23
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 3 cut(s) 241, 421, 424
MflI RGATCY 1 cut(s) 351
MluCI AATT 3 cut(s) 37, 133, 433
MnlI CCTC 3 cut(s) 66, 275, 408
MroI TCCGGA 1 cut(s) 277
MroXI GAANNNNTTC 1 cut(s) 437
MseI TTAA 1 cut(s) 8
MspI CCGG 1 cut(s) 278
MwoI GCNNNNNNNGC 4 cut(s) 168, 268, 303, 354
NcoI CCATGG 1 cut(s) 65
NdeII GATC 1 cut(s) 351
NheI GCTAGC 1 cut(s) 211
NlaIII CATG 2 cut(s) 69, 94
NlaIV GGNNCC 1 cut(s) 263
NmuCI GTSAC 1 cut(s) 23
NspI RCATGY 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 2 cut(s) 43, 389
PkrI GCNGC 3 cut(s) 170, 217, 369
PspN4I GGNNCC 1 cut(s) 263
PspPI GGNCC 3 cut(s) 62, 152, 261
PsuI RGATCY 1 cut(s) 351
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 3 cut(s) 169, 216, 368
Sau3AI GATC 1 cut(s) 351
Sau96I GGNCC 3 cut(s) 62, 152, 261
SetI ASST 6 cut(s) 58, 79, 157, 173, 213, 419
SinI GGWCC 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
Sse9I AATT 3 cut(s) 37, 133, 433
SsiI CCGC 3 cut(s) 216, 297, 357
SspMI CTAG 3 cut(s) 33, 59, 212
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 431
TasI AATT 3 cut(s) 37, 133, 433
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 2 cut(s) 43, 389
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 1 cut(s) 192
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 2 cut(s) 168, 367
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 2 cut(s) 381, 426
TspRI CASTG 1 cut(s) 192
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 2 cut(s) 133, 433
XceI RCATGY 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 437
XspI CTAG 3 cut(s) 33, 59, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.