RchiOBHm_Chr2g0175651

Premnaspirodiene oxygenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000132
Physical Location & Seq
Forward (+)
87746072 .. 87747459
1388 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54271

Sequence Viewer

Length: 834 bp
ATGAAGAAGATGCAAAAAAAGTTTGGACAGATTCTTGAGAGTATCATCAACGATCATAAGATCAAAAGTCAAGGCAATGAGATTGACAAACCAGAGGAAGATCTTGTTGACGTACTTCTCAAACTTCAGGAGTCCAAGAAGCTCGAATTCAACTTCACAACCGATCAGATCAAAGATGTCATTATGGAGATATTCTCAGCAGGGAGTGAGACTACAGCTACCACCATAGAATGGGCAATGTCACAATTGATGAGAAATCCAACAGTAATGAGTAAGGCTCAAGCCGAGGTTCGACGAGTCTTTCAAGGAAAGCCGAAAATTGAAGAAGCAGACGTTCAAAAACTGGAATACTTGAGAGCAGTGGTAAAAGAAACACTGAGATTACACCCTCCAGCACCATTATTCCCAAGAGAATCAAGAGAAAGATGTGAAATCGGAGGATACGAAGTCCAAGCGAAAACCAAAATGATCATCAATGAATGGGCCATTGGAAGAGACCCGGAGAGTTGGGTTGAAGCGGAGTCGTTTAAGCCAGAGAGGTTCCTCCATGGTGGTTCTGATTCCAGCATGGACTTCAAAGCGTCTGACTTCAAGTTCACTCCATTTGGGGCTGGTAGAAGATCGTGTCCGGGTATTTCTTTTGGCCTTTCCATGGTTGCACTTGCTTTTTCTCATTTGCTCTATCACTTCGATTGGGAGCTGGGAAATGGGATCAAACCAGATGAGCTTGATATGACTGAGACTTTTGGGTTCACATGTAGGAGAAAGAATGAATTGTACTTGATTGCCAAGCCTCCATCATCGTTTTCCTTCGCTCAGTCTGAGACATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00591 ko01100 ko04212 ko04726 ko04750 ko04913 map00590 map00591 map01100 map04212 map04726 map04750 map04913
Pfam Domains
Protein Families
p450

Protein Analysis

277

Amino Acids

31.6

Weight (kDa)

5.87

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 256 2.9e-67 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 231
AciI CCGC 1 cut(s) 518
AclWI GGATC 1 cut(s) 719
AcsI RAATTY 1 cut(s) 146
AcuI CTGAAG 1 cut(s) 110
AfaI GTAC 2 cut(s) 114, 779
AfiI CCNNNNNNNGG 2 cut(s) 231, 652
AflIII ACRYGT 1 cut(s) 755
AgsI TTSAA 7 cut(s) 151, 305, 323, 338, 515, 577, 592
AjuI GAANNNNNNNTTGG 2 cut(s) 471, 503
AluBI AGCT 4 cut(s) 142, 218, 700, 727
AluI AGCT 4 cut(s) 142, 218, 700, 727
Alw26I GTCTC 4 cut(s) 203, 489, 734, 818
AlwI GGATC 1 cut(s) 719
AoxI GGCC 2 cut(s) 483, 643
ApoI RAATTY 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 483
AsuC2I CCSGG 2 cut(s) 500, 630
BccI CCATC 1 cut(s) 805
BciVI GTATCC 1 cut(s) 434
BclI TGATCA 1 cut(s) 468
BcnI CCSGG 2 cut(s) 500, 630
BcoDI GTCTC 4 cut(s) 203, 489, 734, 818
BfmI CTRYAG 1 cut(s) 213
BfuI GTATCC 1 cut(s) 434
BglII AGATCT 1 cut(s) 100
Bme1390I CCNGG 2 cut(s) 500, 630
BmgT120I GGNCC 1 cut(s) 483
BmiI GGNNCC 1 cut(s) 542
BmrFI CCNGG 2 cut(s) 500, 630
BplI GAGNNNNNCTC 4 cut(s) 179, 211, 262, 294
BpmI CTGGAG 1 cut(s) 375
BpuEI CTTGAG 3 cut(s) 56, 264, 373
BpuMI CCSGG 2 cut(s) 500, 630
BsaI GGTCTC 1 cut(s) 489
BsaJI CCNNGG 3 cut(s) 285, 547, 651
Bsc4I CCNNNNNNNGG 2 cut(s) 231, 652
Bse1I ACTGG 1 cut(s) 348
Bse3DI GCAATG 2 cut(s) 82, 243
BseDI CCNNGG 3 cut(s) 285, 547, 651
BseGI GGATG 1 cut(s) 827
BseLI CCNNNNNNNGG 2 cut(s) 231, 652
BseMI GCAATG 2 cut(s) 82, 243
BseMII CTCAG 5 cut(s) 210, 368, 729, 813, 830
BseNI ACTGG 1 cut(s) 348
BseYI CCCAGC 1 cut(s) 700
BshFI GGCC 2 cut(s) 485, 645
BsiSI CCGG 2 cut(s) 500, 629
BslI CCNNNNNNNGG 2 cut(s) 231, 652
BsmAI GTCTC 4 cut(s) 203, 489, 734, 818
BsnI GGCC 2 cut(s) 485, 645
Bso31I GGTCTC 1 cut(s) 489
Bsp143I GATC 8 cut(s) 52, 60, 100, 163, 168, 468, 620, 711
Bsp19I CCATGG 2 cut(s) 547, 651
BspACI CCGC 1 cut(s) 518
BspANI GGCC 2 cut(s) 485, 645
BspCNI CTCAG 5 cut(s) 209, 369, 730, 814, 829
BspLI GGNNCC 1 cut(s) 542
BspPI GGATC 1 cut(s) 719
BspTNI GGTCTC 1 cut(s) 489
BsrDI GCAATG 2 cut(s) 82, 243
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 3 cut(s) 285, 547, 651
BssMI GATC 8 cut(s) 52, 60, 100, 163, 168, 468, 620, 711
BssT1I CCWWGG 2 cut(s) 547, 651
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 1 cut(s) 487
BstDEI CTNAG 5 cut(s) 196, 377, 738, 816, 822
BstDSI CCRYGG 2 cut(s) 547, 651
BstF5I GGATG 1 cut(s) 827
BstKTI GATC 8 cut(s) 55, 63, 103, 166, 171, 471, 623, 714
BstMAI GTCTC 4 cut(s) 203, 489, 734, 818
BstMBI GATC 8 cut(s) 52, 60, 100, 163, 168, 468, 620, 711
BstNSI RCATGY 1 cut(s) 759
BstSCI CCNGG 2 cut(s) 498, 628
BstSFI CTRYAG 1 cut(s) 213
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuI GTATCC 1 cut(s) 434
BsuRI GGCC 2 cut(s) 485, 645
BtgI CCRYGG 2 cut(s) 547, 651
BtsCI GGATG 1 cut(s) 827
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 2 cut(s) 366, 374
Cfr13I GGNCC 1 cut(s) 483
CseI GACGC 1 cut(s) 570
Csp6I GTAC 2 cut(s) 113, 778
CviAII CATG 4 cut(s) 548, 568, 652, 756
CviQI GTAC 2 cut(s) 113, 778
DdeI CTNAG 5 cut(s) 196, 377, 738, 816, 822
DpnI GATC 8 cut(s) 54, 62, 102, 165, 170, 470, 622, 713
DpnII GATC 8 cut(s) 52, 60, 100, 163, 168, 468, 620, 711
Eam1104I CTCTTC 1 cut(s) 487
EarI CTCTTC 1 cut(s) 487
Eco130I CCWWGG 2 cut(s) 547, 651
Eco31I GGTCTC 1 cut(s) 489
Eco57I CTGAAG 1 cut(s) 110
EcoRI GAATTC 1 cut(s) 146
EcoT14I CCWWGG 2 cut(s) 547, 651
ErhI CCWWGG 2 cut(s) 547, 651
FaeI CATG 4 cut(s) 551, 571, 655, 759
FaiI YATR 8 cut(s) 57, 185, 227, 549, 569, 653, 734, 757
FatI CATG 4 cut(s) 547, 567, 651, 755
FbaI TGATCA 1 cut(s) 468
FokI GGATG 1 cut(s) 814
GsaI CCCAGC 1 cut(s) 704
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 2 cut(s) 485, 645
HapII CCGG 2 cut(s) 500, 629
HgaI GACGC 1 cut(s) 570
Hin1II CATG 4 cut(s) 551, 571, 655, 759
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 6 cut(s) 31, 131, 297, 413, 521, 560
HpaII CCGG 2 cut(s) 500, 629
Hpy166II GTNNAC 3 cut(s) 109, 597, 753
Hpy188I TCNGA 5 cut(s) 168, 437, 559, 586, 823
Hpy188III TCNNGA 4 cut(s) 35, 128, 417, 831
Hpy8I GTNNAC 3 cut(s) 109, 597, 753
Hpy99I CGWCG 1 cut(s) 297
HpyAV CCTTC 1 cut(s) 820
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 2 cut(s) 111, 333
HpyCH4V TGCA 2 cut(s) 13, 659
HpyF3I CTNAG 5 cut(s) 196, 377, 738, 816, 822
HpySE526I ACGT 2 cut(s) 111, 333
Hsp92II CATG 4 cut(s) 551, 571, 655, 759
Ksp22I TGATCA 1 cut(s) 468
Kzo9I GATC 8 cut(s) 52, 60, 100, 163, 168, 468, 620, 711
LmnI GCTCC 1 cut(s) 697
MaeII ACGT 2 cut(s) 111, 333
MaeIII GTNAC 1 cut(s) 240
MalI GATC 8 cut(s) 54, 62, 102, 165, 170, 470, 622, 713
MboI GATC 8 cut(s) 52, 60, 100, 163, 168, 468, 620, 711
MboII GAAGA 6 cut(s) 16, 19, 110, 335, 504, 630
MfeI CAATTG 1 cut(s) 245
MflI RGATCY 1 cut(s) 100
MluCI AATT 4 cut(s) 146, 245, 318, 773
MlyI GAGTC 3 cut(s) 140, 306, 530
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 7 cut(s) 88, 280, 399, 431, 531, 554, 804
MseI TTAA 1 cut(s) 528
MspI CCGG 2 cut(s) 500, 629
MspR9I CCNGG 2 cut(s) 500, 630
MunI CAATTG 1 cut(s) 245
NciI CCSGG 2 cut(s) 500, 630
NcoI CCATGG 2 cut(s) 547, 651
NdeII GATC 8 cut(s) 52, 60, 100, 163, 168, 468, 620, 711
NlaIII CATG 4 cut(s) 551, 571, 655, 759
NlaIV GGNNCC 1 cut(s) 542
NmeAIII GCCGAG 1 cut(s) 310
NmuCI GTSAC 1 cut(s) 240
NspI RCATGY 1 cut(s) 759
PciI ACATGT 1 cut(s) 755
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PfeI GAWTC 3 cut(s) 31, 413, 560
PflMI CCANNNNNTGG 1 cut(s) 231
PleI GAGTC 3 cut(s) 139, 305, 529
PpsI GAGTC 3 cut(s) 139, 305, 529
PscI ACATGT 1 cut(s) 755
PspFI CCCAGC 1 cut(s) 700
PspN4I GGNNCC 1 cut(s) 542
PspPI GGNCC 1 cut(s) 483
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 2 cut(s) 114, 779
RsaNI GTAC 2 cut(s) 113, 778
SaqAI TTAA 1 cut(s) 528
Sau3AI GATC 8 cut(s) 52, 60, 100, 163, 168, 468, 620, 711
Sau96I GGNCC 1 cut(s) 483
SchI GAGTC 3 cut(s) 140, 306, 530
ScrFI CCNGG 2 cut(s) 500, 630
SetI ASST 8 cut(s) 114, 144, 220, 291, 336, 542, 702, 729
SfcI CTRYAG 1 cut(s) 213
SmlI CTYRAG 3 cut(s) 35, 279, 352
SmoI CTYRAG 3 cut(s) 35, 279, 352
Sse9I AATT 4 cut(s) 146, 245, 318, 773
SsiI CCGC 1 cut(s) 518
StyD4I CCNGG 2 cut(s) 498, 628
StyI CCWWGG 2 cut(s) 547, 651
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 2 cut(s) 114, 336
TaqI TCGA 3 cut(s) 144, 292, 690
TasI AATT 4 cut(s) 146, 245, 318, 773
TatI WGTACW 1 cut(s) 777
TfiI GAWTC 3 cut(s) 31, 413, 560
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 2 cut(s) 366, 381
TseFI GTSAC 1 cut(s) 240
Tsp45I GTSAC 1 cut(s) 240
TspDTI ATGAA 3 cut(s) 17, 492, 786
TspRI CASTG 2 cut(s) 366, 381
Van91I CCANNNNNTGG 1 cut(s) 231
XapI RAATTY 1 cut(s) 146
XceI RCATGY 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.