Rroxscaffold_6G00425990

iron ion binding

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
46903404 .. 46906706
3303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00425990.1

Sequence Viewer

Length: 315 bp
ATGTCCGGCATATCATTTGGAACTGCAGCTCTTGAGCTTGCACTTTCTCAATTGCTCTACTTCTTCAACTGGAAACTCCCAAATGTGACAAAGTCGGAAGAGCTTGACATGACGGAAGCTATGGGAATGAGCGCGAGGAAGAGGAATGAATTGAGTGTTATTGCCATTCCTTTCATTGCAAAACAAGTCAATGCTGCTTTTAGGATTGCTACTTGCTATCAATTCGGAGTAGGAATACAGGTTGTTTTGCGATCCCGATTGCGTGGTAGGATTGTAGGACGTGCGGGATCGCCGATGTTGCTTCGATCCCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.54

Weight (kDa)

10.88

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 134
AciI CCGC 1 cut(s) 284
AclWI GGATC 3 cut(s) 246, 295, 300
AgsI TTSAA 1 cut(s) 67
AjiI CACGTC 1 cut(s) 281
AluBI AGCT 4 cut(s) 29, 37, 103, 119
AluI AGCT 4 cut(s) 29, 37, 103, 119
AlwI GGATC 3 cut(s) 246, 295, 300
ApeKI GCWGC 2 cut(s) 26, 194
AspLEI GCGC 1 cut(s) 134
AsuC2I CCSGG 1 cut(s) 310
BbvI GCAGC 2 cut(s) 38, 181
BcnI CCSGG 1 cut(s) 310
BfmI CTRYAG 1 cut(s) 24
BisI GCNGC 2 cut(s) 27, 195
BlsI GCNGC 2 cut(s) 28, 196
Bme1390I CCNGG 1 cut(s) 310
BmgBI CACGTC 1 cut(s) 281
BmrFI CCNGG 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 53
BpuMI CCSGG 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 74
Bse3DI GCAATG 1 cut(s) 174
BseMI GCAATG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 74
BseXI GCAGC 2 cut(s) 38, 181
Bsh1236I CGCG 1 cut(s) 134
BsiSI CCGG 2 cut(s) 6, 310
Bsp143I GATC 3 cut(s) 251, 287, 305
BspACI CCGC 1 cut(s) 284
BspFNI CGCG 1 cut(s) 134
BspMAI CTGCAG 1 cut(s) 28
BspPI GGATC 3 cut(s) 246, 295, 300
BspQI GCTCTTC 1 cut(s) 93
BsrDI GCAATG 1 cut(s) 174
BsrI ACTGG 1 cut(s) 74
BssMI GATC 3 cut(s) 251, 287, 305
Bst6I CTCTTC 2 cut(s) 93, 134
BstC8I GCNNGC 1 cut(s) 39
BstFNI CGCG 1 cut(s) 134
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 3 cut(s) 254, 290, 308
BstMBI GATC 3 cut(s) 251, 287, 305
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 308
BstSFI CTRYAG 1 cut(s) 24
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 38, 181
BtrI CACGTC 1 cut(s) 281
Cac8I GCNNGC 1 cut(s) 39
CfoI GCGC 1 cut(s) 134
CviAII CATG 1 cut(s) 109
CviJI RGCY 4 cut(s) 29, 37, 103, 119
CviKI_1 RGCY 4 cut(s) 29, 37, 103, 119
DpnI GATC 3 cut(s) 253, 289, 307
DpnII GATC 3 cut(s) 251, 287, 305
Eam1104I CTCTTC 2 cut(s) 93, 134
EarI CTCTTC 2 cut(s) 93, 134
FaeI CATG 1 cut(s) 112
FaiI YATR 3 cut(s) 11, 110, 122
FatI CATG 1 cut(s) 108
FauI CCCGC 1 cut(s) 277
Fnu4HI GCNGC 2 cut(s) 27, 195
Fsp4HI GCNGC 2 cut(s) 27, 195
GlaI GCGC 1 cut(s) 133
GluI GCNGC 2 cut(s) 27, 195
HapII CCGG 2 cut(s) 6, 310
HhaI GCGC 1 cut(s) 134
Hin1II CATG 1 cut(s) 112
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HpaII CCGG 2 cut(s) 6, 310
Hpy188I TCNGA 2 cut(s) 97, 227
Hpy188III TCNNGA 2 cut(s) 32, 255
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 3 cut(s) 26, 41, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 1 cut(s) 112
HspAI GCGC 1 cut(s) 132
Kzo9I GATC 3 cut(s) 251, 287, 305
LguI GCTCTTC 1 cut(s) 93
LpnPI CCDG 3 cut(s) 19, 55, 224
Lsp1109I GCAGC 2 cut(s) 38, 181
MaeII ACGT 1 cut(s) 280
MaeIII GTNAC 1 cut(s) 85
MalI GATC 3 cut(s) 253, 289, 307
MboI GATC 3 cut(s) 251, 287, 305
MboII GAAGA 3 cut(s) 55, 110, 151
MfeI CAATTG 1 cut(s) 50
MluCI AATT 3 cut(s) 50, 149, 221
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 2 cut(s) 129, 135
MspI CCGG 2 cut(s) 6, 310
MspR9I CCNGG 1 cut(s) 310
MunI CAATTG 1 cut(s) 50
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 298
NciI CCSGG 1 cut(s) 310
NdeII GATC 3 cut(s) 251, 287, 305
NlaIII CATG 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 93
PflFI GACNNNGTC 1 cut(s) 91
PkrI GCNGC 2 cut(s) 28, 196
PstI CTGCAG 1 cut(s) 28
PsyI GACNNNGTC 1 cut(s) 91
SapI GCTCTTC 1 cut(s) 93
SatI GCNGC 2 cut(s) 27, 195
Sau3AI GATC 3 cut(s) 251, 287, 305
ScrFI CCNGG 1 cut(s) 310
SetI ASST 6 cut(s) 31, 39, 105, 121, 243, 283
SfcI CTRYAG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 3 cut(s) 50, 149, 221
SsiI CCGC 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 308
TaiI ACGT 1 cut(s) 283
TaqI TCGA 1 cut(s) 304
TasI AATT 3 cut(s) 50, 149, 221
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 2 cut(s) 26, 194
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 162, 163
TspGWI ACGGA 1 cut(s) 128
Tth111I GACNNNGTC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.