Rmu_co8416839.1_g000001

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8416839.1
Physical Location & Seq
Forward (+)
251 .. 1132
882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8416839.1_g000001.1.cds

Sequence Viewer

Length: 882 bp
atggtactcaaaatagcaagcagaagcaaaaccaaaagctccagttcaaatctaccaccaggaccacgcaagctaccctttatagggaacatccaccagcttgctggttctctaccccatcatagtctgcgaaacttggctaagaaatatggaccctttatgcacctaaggcttggagaagtttccaccgtagttgtttcatcagcagagtttgccagagaggtgatgaaaactcacgacgctacttttgcatccaggccccatctccttgctgcaaccatcgtgtcttacaatgccacaaacattgtgtttgcaaaatatggtgattactggagacaactgcgaaaaatttgcacactagagctcctaagcacaaagcgcgttcaatcttatcgacctattagagaggaagagatgctgaatctcatcaaatggattgcttcaaaagccaggtcacctatcaatcttacagagaaaatttactcatctacatatatgatcacttcacgagcagcctttggtaaaaagagcaaatatcatgaagattttatagatgttgtgaaggaaggttcacaattggcaggaggctttgatcttgcagatgtctttccttctttcagtttgcttcatatgataactgggatgaggcctaaacttgaaaggttgcacaaaaaaactgacaggatactggaaaacatcatcaaagaacacaaagataaggcaacatcaaaaggttctgagagggaagcacaggaagacctggtagatgtactcttaaaatttcacgaggataatgatggccctgagtttaacctaactactgacaacatcaaagcagtaatcttggtaagtaaactttctactgatattttgcctggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

293

Amino Acids

33.05

Weight (kDa)

9.61

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 381
AcsI RAATTY 3 cut(s) 348, 477, 779
AfaI GTAC 2 cut(s) 6, 771
AfiI CCNNNNNNNGG 2 cut(s) 83, 84
AgsI TTSAA 4 cut(s) 48, 386, 444, 659
AjnI CCWGG 5 cut(s) 58, 254, 449, 759, 874
AluBI AGCT 4 cut(s) 39, 73, 100, 364
AluI AGCT 4 cut(s) 39, 73, 100, 364
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 1 cut(s) 328
AoxI GGCC 3 cut(s) 257, 647, 799
ApeKI GCWGC 2 cut(s) 272, 512
ApoI RAATTY 3 cut(s) 348, 477, 779
ArsI GACNNNNNNTTYG 4 cut(s) 230, 262, 437, 469
AspLEI GCGC 1 cut(s) 381
AspS9I GGNCC 4 cut(s) 62, 152, 258, 800
AsuHPI GGTGA 3 cut(s) 235, 335, 447
AvaII GGWCC 2 cut(s) 62, 152
AxyI CCTNAGG 1 cut(s) 167
BanII GRGCYC 1 cut(s) 366
BauI CACGAG 2 cut(s) 507, 785
BbsI GAAGAC 1 cut(s) 762
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 2 cut(s) 259, 524
BccI CCATC 4 cut(s) 126, 270, 287, 791
BcgI CGANNNNNNTGC 2 cut(s) 333, 367
BciT130I CCWGG 5 cut(s) 60, 256, 451, 761, 876
BciVI GTATCC 1 cut(s) 678
BclI TGATCA 1 cut(s) 498
BcoDI GTCTC 1 cut(s) 328
BfaI CTAG 1 cut(s) 359
BfuI GTATCC 1 cut(s) 678
BisI GCNGC 2 cut(s) 273, 513
BlsI GCNGC 2 cut(s) 274, 514
Bme1390I CCNGG 5 cut(s) 60, 256, 451, 761, 876
Bme18I GGWCC 2 cut(s) 62, 152
BmgT120I GGNCC 4 cut(s) 62, 152, 258, 800
BmiI GGNNCC 2 cut(s) 154, 260
BmrFI CCNGG 5 cut(s) 60, 256, 451, 761, 876
BmrI ACTGGG 1 cut(s) 648
BmsI GCATC 2 cut(s) 260, 405
BmuI ACTGGG 1 cut(s) 648
BpiI GAAGAC 1 cut(s) 762
BpmI CTGGAG 2 cut(s) 25, 352
Bpu10I CCTNAGC 1 cut(s) 368
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 84
Bse1I ACTGG 4 cut(s) 42, 335, 643, 693
Bse21I CCTNAGG 1 cut(s) 167
BseBI CCWGG 5 cut(s) 60, 256, 451, 761, 876
BseGI GGATG 3 cut(s) 90, 251, 648
BseLI CCNNNNNNNGG 2 cut(s) 83, 84
BseMII CTCAG 2 cut(s) 729, 795
BseNI ACTGG 4 cut(s) 42, 335, 643, 693
BseXI GCAGC 2 cut(s) 259, 524
Bsh1236I CGCG 1 cut(s) 381
BshFI GGCC 3 cut(s) 259, 649, 801
BsiHKAI GWGCWC 1 cut(s) 366
BslI CCNNNNNNNGG 2 cut(s) 83, 84
BsmAI GTCTC 1 cut(s) 328
BsnI GGCC 3 cut(s) 259, 649, 801
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 2 cut(s) 498, 592
BspANI GGCC 3 cut(s) 259, 649, 801
BspCNI CTCAG 2 cut(s) 730, 796
BspFNI CGCG 1 cut(s) 381
BspHI TCATGA 1 cut(s) 538
BspLI GGNNCC 2 cut(s) 154, 260
BsrI ACTGG 4 cut(s) 42, 335, 643, 693
BssMI GATC 2 cut(s) 498, 592
BssSI CACGAG 2 cut(s) 507, 785
Bst2BI CACGAG 2 cut(s) 507, 785
Bst2UI CCWGG 5 cut(s) 60, 256, 451, 761, 876
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 405
BstAPI GCANNNNNTGC 1 cut(s) 212
BstC8I GCNNGC 3 cut(s) 19, 71, 102
BstDEI CTNAG 5 cut(s) 141, 167, 368, 738, 804
BstEII GGTNACC 1 cut(s) 453
BstF5I GGATG 3 cut(s) 90, 251, 648
BstFNI CGCG 1 cut(s) 381
BstHHI GCGC 1 cut(s) 381
BstKTI GATC 2 cut(s) 501, 595
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 2 cut(s) 498, 592
BstMWI GCNNNNNNNGC 5 cut(s) 169, 212, 248, 378, 446
BstNI CCWGG 5 cut(s) 60, 256, 451, 761, 876
BstPI GGTNACC 1 cut(s) 453
BstSCI CCNGG 5 cut(s) 58, 254, 449, 759, 874
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 2 cut(s) 259, 524
BstV2I GAAGAC 1 cut(s) 762
BstXI CCANNNNNNTGG 1 cut(s) 104
Bsu36I CCTNAGG 1 cut(s) 167
BsuI GTATCC 1 cut(s) 678
BsuRI GGCC 3 cut(s) 259, 649, 801
BtsCI GGATG 3 cut(s) 90, 251, 648
Cac8I GCNNGC 3 cut(s) 19, 71, 102
CciI TCATGA 1 cut(s) 538
CfoI GCGC 1 cut(s) 381
Cfr13I GGNCC 4 cut(s) 62, 152, 258, 800
CseI GACGC 1 cut(s) 248
CsiI ACCWGGT 1 cut(s) 759
Csp6I GTAC 2 cut(s) 5, 770
CspCI CAANNNNNGTGG 4 cut(s) 175, 210, 286, 321
CviAII CATG 1 cut(s) 539
CviQI GTAC 2 cut(s) 5, 770
DdeI CTNAG 5 cut(s) 141, 167, 368, 738, 804
DpnI GATC 2 cut(s) 500, 594
DpnII GATC 2 cut(s) 498, 592
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Ecl136II GAGCTC 1 cut(s) 364
Eco147I AGGCCT 1 cut(s) 649
Eco24I GRGCYC 1 cut(s) 366
Eco47I GGWCC 2 cut(s) 62, 152
Eco53kI GAGCTC 1 cut(s) 364
Eco81I CCTNAGG 1 cut(s) 167
Eco91I GGTNACC 1 cut(s) 453
EcoICRI GAGCTC 1 cut(s) 364
EcoO109I RGGNCCY 1 cut(s) 258
EcoO65I GGTNACC 1 cut(s) 453
EcoRII CCWGG 5 cut(s) 58, 254, 449, 759, 874
EcoT38I GRGCYC 1 cut(s) 366
FaeI CATG 1 cut(s) 542
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FatI CATG 1 cut(s) 538
FauNDI CATATG 1 cut(s) 630
FbaI TGATCA 1 cut(s) 498
Fnu4HI GCNGC 2 cut(s) 273, 513
FokI GGATG 3 cut(s) 77, 238, 655
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 2 cut(s) 273, 513
FspBI CTAG 1 cut(s) 359
GlaI GCGC 1 cut(s) 380
GluI GCNGC 2 cut(s) 273, 513
GsuI CTGGAG 2 cut(s) 25, 352
HaeIII GGCC 3 cut(s) 259, 649, 801
HgaI GACGC 1 cut(s) 248
HhaI GCGC 1 cut(s) 381
Hin1II CATG 1 cut(s) 542
Hin6I GCGC 1 cut(s) 379
HinP1I GCGC 1 cut(s) 379
HinfI GANTC 1 cut(s) 421
HphI GGTGA 3 cut(s) 235, 335, 447
Hpy166II GTNNAC 2 cut(s) 572, 854
Hpy188I TCNGA 1 cut(s) 739
Hpy188III TCNNGA 4 cut(s) 236, 507, 539, 785
Hpy8I GTNNAC 2 cut(s) 572, 854
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 556, 560, 621
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 7 cut(s) 163, 251, 275, 314, 354, 599, 667
HpyF10VI GCNNNNNNNGC 5 cut(s) 169, 212, 248, 378, 446
HpyF3I CTNAG 5 cut(s) 141, 167, 368, 738, 804
Hsp92II CATG 1 cut(s) 542
HspAI GCGC 1 cut(s) 379
Ksp22I TGATCA 1 cut(s) 498
Kzo9I GATC 2 cut(s) 498, 592
LmnI GCTCC 2 cut(s) 44, 369
Lsp1109I GCAGC 2 cut(s) 259, 524
LweI GCATC 2 cut(s) 260, 405
MabI ACCWGGT 1 cut(s) 759
MaeI CTAG 1 cut(s) 359
MaeIII GTNAC 1 cut(s) 453
MalI GATC 2 cut(s) 500, 594
MboI GATC 2 cut(s) 498, 592
MboII GAAGA 3 cut(s) 422, 554, 767
MfeI CAATTG 1 cut(s) 575
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 4 cut(s) 348, 477, 575, 779
MnlI CCTC 6 cut(s) 214, 400, 578, 639, 735, 781
MseI TTAA 2 cut(s) 776, 810
MspR9I CCNGG 5 cut(s) 60, 256, 451, 761, 876
MunI CAATTG 1 cut(s) 575
MvaI CCWGG 5 cut(s) 60, 256, 451, 761, 876
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 5 cut(s) 169, 212, 248, 378, 446
NdeI CATATG 1 cut(s) 630
NdeII GATC 2 cut(s) 498, 592
NlaIII CATG 1 cut(s) 542
NlaIV GGNNCC 2 cut(s) 154, 260
NmuCI GTSAC 1 cut(s) 453
PagI TCATGA 1 cut(s) 538
PceI AGGCCT 1 cut(s) 649
PfeI GAWTC 1 cut(s) 421
PkrI GCNGC 2 cut(s) 274, 514
Psp124BI GAGCTC 1 cut(s) 366
Psp6I CCWGG 5 cut(s) 58, 254, 449, 759, 874
PspEI GGTNACC 1 cut(s) 453
PspGI CCWGG 5 cut(s) 58, 254, 449, 759, 874
PspN4I GGNNCC 2 cut(s) 154, 260
PspPI GGNCC 4 cut(s) 62, 152, 258, 800
RsaI GTAC 2 cut(s) 6, 771
RsaNI GTAC 2 cut(s) 5, 770
SacI GAGCTC 1 cut(s) 366
SaqAI TTAA 2 cut(s) 776, 810
SatI GCNGC 2 cut(s) 273, 513
Sau3AI GATC 2 cut(s) 498, 592
Sau96I GGNCC 4 cut(s) 62, 152, 258, 800
ScrFI CCNGG 5 cut(s) 60, 256, 451, 761, 876
SduI GDGCHC 1 cut(s) 366
SexAI ACCWGGT 1 cut(s) 759
SfaNI GCATC 2 cut(s) 260, 405
SinI GGWCC 2 cut(s) 62, 152
Sse9I AATT 4 cut(s) 348, 477, 575, 779
SseBI AGGCCT 1 cut(s) 649
SspMI CTAG 1 cut(s) 359
SstI GAGCTC 1 cut(s) 366
StuI AGGCCT 1 cut(s) 649
StyD4I CCNGG 5 cut(s) 58, 254, 449, 759, 874
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 1 cut(s) 394
TasI AATT 4 cut(s) 348, 477, 575, 779
TatI WGTACW 1 cut(s) 769
TfiI GAWTC 1 cut(s) 421
Tru1I TTAA 2 cut(s) 776, 810
Tru9I TTAA 2 cut(s) 776, 810
TseFI GTSAC 1 cut(s) 453
TseI GCWGC 2 cut(s) 272, 512
Tsp45I GTSAC 1 cut(s) 453
TspDTI ATGAA 4 cut(s) 189, 242, 555, 617
VpaK11BI GGWCC 2 cut(s) 62, 152
XapI RAATTY 3 cut(s) 348, 477, 779
XcmI CCANNNNNNNNNTGG 1 cut(s) 101
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.