Rh5AG290500

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000132
Physical Location & Seq
Reverse (-)
39757482 .. 39759064
1583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG290500.1

Sequence Viewer

Length: 1023 bp
ATGGACCTCCAGTTCTCTTCCTTCCATGTCATACTTACCTTTTCTCTCTTTGTGATTATGGTACTCAAAATAGCAAGCAGAGGCAAAACCAAAAGCTCCAGTTCAAATCTACCACCAGGACCATGCAAGCTACCCTTTATAGGGAACATCCACCAGCTTGCTGGTTCTCTACCCCATCATAGTCTGCGAAACTTGGCCAAGAAATATGGACCCTTTATGCACCTAAGGCTTGGAGAAGTTTCCACCGTAGTTGTTTCATCAGCAGAGTTTGCCAGAGAGGTGATGAAAACTCACGACGCTACTTTTGCATCAAGGCCCCATCTCCTTGCTGCAACCATCGTGTCTTACAACGCCACAAACATTGTGTTTGCAAAATATGGTGATTACTGGAGACAACTGCGAAAAATTTGCACACTAGAGCTCCTAAGCACAAAGCGCGTTCAATCTTATCGACCTATTAGAGAGGAAGAGATGCTGAATCTCATCAAATGGATTGCTTCAAAAGCCATGTCACCTATCAATCTTACAGAGAAAATTTACTCATCTACATATATGATCACTTCACGAGCAGCCTTTGGTAAAAAGAGCAAATATCATGAAGATTTTATAGATGTTGTGAAGGAAGGTACACAATTGGCAGGAGGCTTTGATCTTGCAGATGTCTTTCCTTCTTTCAGTTTGCTTCATATGATAACTGGGATGAGGCCTAAACTTGAAAGGTTGCACAAAAAAACAGACAGGATACTGGAAAACATCATCAAAGAACACAAAGATAAGGCAACATCAAAAGGTTCTGAGAGGGAAGCACAGGAAGACCTGGTAGATGTACTCTTAAAATTTCACGAGGATAATGATGGCCCTGAGTTTAACCTAACTACTGACAACATCAAAGCAGTAATCTTGAATTTGACTTCAGTAATTCGTCTTGACAAGAACTGCTCAACTTCTCAAGTTGTTCAATTCCAAGAGACCCATAGATCAAGTCCACTTGATCTACAGGTCTCTTGGAGAAGAACTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

340

Amino Acids

38.6

Weight (kDa)

9.45

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 38 - 303 2.3e-38 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 438
AcoI YGGCCR 1 cut(s) 195
AcsI RAATTY 4 cut(s) 405, 534, 836, 904
AcuI CTGAAG 1 cut(s) 897
AfaI GTAC 3 cut(s) 63, 628, 828
AfiI CCNNNNNNNGG 2 cut(s) 140, 141
AgsI TTSAA 6 cut(s) 105, 443, 501, 716, 904, 959
AjnI CCWGG 2 cut(s) 115, 816
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 4 cut(s) 96, 130, 157, 421
AluI AGCT 4 cut(s) 96, 130, 157, 421
Alw21I GWGCWC 1 cut(s) 423
Alw26I GTCTC 3 cut(s) 385, 962, 1006
AoxI GGCC 4 cut(s) 195, 314, 704, 856
ApeKI GCWGC 2 cut(s) 329, 569
ApoI RAATTY 4 cut(s) 405, 534, 836, 904
ArsI GACNNNNNNTTYG 4 cut(s) 287, 319, 494, 526
AspLEI GCGC 1 cut(s) 438
AspS9I GGNCC 5 cut(s) 4, 119, 209, 315, 857
AsuHPI GGTGA 3 cut(s) 292, 392, 504
AvaII GGWCC 3 cut(s) 4, 119, 209
AxyI CCTNAGG 1 cut(s) 224
BalI TGGCCA 1 cut(s) 197
BanII GRGCYC 1 cut(s) 423
BauI CACGAG 2 cut(s) 564, 842
BbsI GAAGAC 1 cut(s) 819
Bbv12I GWGCWC 1 cut(s) 423
BbvI GCAGC 2 cut(s) 316, 581
BccI CCATC 4 cut(s) 183, 327, 344, 848
BcgI CGANNNNNNTGC 2 cut(s) 390, 424
BciT130I CCWGG 2 cut(s) 117, 818
BciVI GTATCC 1 cut(s) 735
BclI TGATCA 1 cut(s) 555
BcoDI GTCTC 3 cut(s) 385, 962, 1006
BfaI CTAG 1 cut(s) 416
BfmI CTRYAG 1 cut(s) 995
BfuI GTATCC 1 cut(s) 735
BisI GCNGC 2 cut(s) 330, 570
BlsI GCNGC 2 cut(s) 331, 571
Bme1390I CCNGG 2 cut(s) 117, 818
Bme18I GGWCC 3 cut(s) 4, 119, 209
BmgT120I GGNCC 5 cut(s) 4, 119, 209, 315, 857
BmiI GGNNCC 2 cut(s) 211, 317
BmrFI CCNGG 2 cut(s) 117, 818
BmrI ACTGGG 1 cut(s) 705
BmsI GCATC 2 cut(s) 317, 462
BmuI ACTGGG 1 cut(s) 705
BpiI GAAGAC 1 cut(s) 819
BpmI CTGGAG 2 cut(s) 82, 409
Bpu10I CCTNAGC 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 933
BsaI GGTCTC 2 cut(s) 962, 1006
BsaXI ACNNNNNCTCC 2 cut(s) 405, 435
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 141
Bse1I ACTGG 5 cut(s) 10, 99, 392, 700, 750
Bse21I CCTNAGG 1 cut(s) 224
BseBI CCWGG 2 cut(s) 117, 818
BseGI GGATG 2 cut(s) 147, 705
BseLI CCNNNNNNNGG 2 cut(s) 140, 141
BseMII CTCAG 2 cut(s) 786, 852
BseNI ACTGG 5 cut(s) 10, 99, 392, 700, 750
BseXI GCAGC 2 cut(s) 316, 581
Bsh1236I CGCG 1 cut(s) 438
BshFI GGCC 4 cut(s) 197, 316, 706, 858
BsiHKAI GWGCWC 1 cut(s) 423
BslI CCNNNNNNNGG 2 cut(s) 140, 141
BsmAI GTCTC 3 cut(s) 385, 962, 1006
BsnI GGCC 4 cut(s) 197, 316, 706, 858
Bso31I GGTCTC 2 cut(s) 962, 1006
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 4 cut(s) 555, 649, 977, 991
BspANI GGCC 4 cut(s) 197, 316, 706, 858
BspCNI CTCAG 2 cut(s) 787, 853
BspFNI CGCG 1 cut(s) 438
BspHI TCATGA 1 cut(s) 595
BspLI GGNNCC 2 cut(s) 211, 317
BspTNI GGTCTC 2 cut(s) 962, 1006
BsrI ACTGG 5 cut(s) 10, 99, 392, 700, 750
BssMI GATC 4 cut(s) 555, 649, 977, 991
BssSI CACGAG 2 cut(s) 564, 842
Bst2BI CACGAG 2 cut(s) 564, 842
Bst2UI CCWGG 2 cut(s) 117, 818
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 2 cut(s) 22, 462
BstAPI GCANNNNNTGC 1 cut(s) 269
BstC8I GCNNGC 3 cut(s) 76, 128, 159
BstDEI CTNAG 4 cut(s) 224, 425, 795, 861
BstF5I GGATG 2 cut(s) 147, 705
BstFNI CGCG 1 cut(s) 438
BstHHI GCGC 1 cut(s) 438
BstKTI GATC 4 cut(s) 558, 652, 980, 994
BstMAI GTCTC 3 cut(s) 385, 962, 1006
BstMBI GATC 4 cut(s) 555, 649, 977, 991
BstMWI GCNNNNNNNGC 5 cut(s) 226, 269, 305, 435, 503
BstNI CCWGG 2 cut(s) 117, 818
BstSCI CCNGG 2 cut(s) 115, 816
BstSFI CTRYAG 1 cut(s) 995
BstUI CGCG 1 cut(s) 438
BstV1I GCAGC 2 cut(s) 316, 581
BstV2I GAAGAC 1 cut(s) 819
BstXI CCANNNNNNTGG 1 cut(s) 161
Bsu36I CCTNAGG 1 cut(s) 224
BsuI GTATCC 1 cut(s) 735
BsuRI GGCC 4 cut(s) 197, 316, 706, 858
BtsCI GGATG 2 cut(s) 147, 705
Cac8I GCNNGC 3 cut(s) 76, 128, 159
CciI TCATGA 1 cut(s) 595
CfoI GCGC 1 cut(s) 438
Cfr13I GGNCC 5 cut(s) 4, 119, 209, 315, 857
CseI GACGC 1 cut(s) 305
CsiI ACCWGGT 1 cut(s) 816
Csp6I GTAC 3 cut(s) 62, 627, 827
CspCI CAANNNNNGTGG 4 cut(s) 232, 267, 343, 378
CviAII CATG 4 cut(s) 26, 123, 508, 596
CviQI GTAC 3 cut(s) 62, 627, 827
DdeI CTNAG 4 cut(s) 224, 425, 795, 861
DpnI GATC 4 cut(s) 557, 651, 979, 993
DpnII GATC 4 cut(s) 555, 649, 977, 991
EaeI YGGCCR 1 cut(s) 195
Eam1104I CTCTTC 2 cut(s) 22, 462
EarI CTCTTC 2 cut(s) 22, 462
Ecl136II GAGCTC 1 cut(s) 421
Eco147I AGGCCT 1 cut(s) 706
Eco24I GRGCYC 1 cut(s) 423
Eco31I GGTCTC 2 cut(s) 962, 1006
Eco47I GGWCC 3 cut(s) 4, 119, 209
Eco53kI GAGCTC 1 cut(s) 421
Eco57I CTGAAG 1 cut(s) 897
Eco81I CCTNAGG 1 cut(s) 224
EcoICRI GAGCTC 1 cut(s) 421
EcoO109I RGGNCCY 1 cut(s) 315
EcoRII CCWGG 2 cut(s) 115, 816
EcoT38I GRGCYC 1 cut(s) 423
FaeI CATG 4 cut(s) 29, 126, 511, 599
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FatI CATG 4 cut(s) 25, 122, 507, 595
FauNDI CATATG 1 cut(s) 687
FbaI TGATCA 1 cut(s) 555
Fnu4HI GCNGC 2 cut(s) 330, 570
FokI GGATG 2 cut(s) 134, 712
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 2 cut(s) 330, 570
FspBI CTAG 1 cut(s) 416
GlaI GCGC 1 cut(s) 437
GluI GCNGC 2 cut(s) 330, 570
GsuI CTGGAG 2 cut(s) 82, 409
HaeIII GGCC 4 cut(s) 197, 316, 706, 858
HgaI GACGC 1 cut(s) 305
HhaI GCGC 1 cut(s) 438
Hin1II CATG 4 cut(s) 29, 126, 511, 599
Hin6I GCGC 1 cut(s) 436
HinP1I GCGC 1 cut(s) 436
HinfI GANTC 1 cut(s) 478
HphI GGTGA 3 cut(s) 292, 392, 504
Hpy166II GTNNAC 2 cut(s) 629, 986
Hpy188I TCNGA 1 cut(s) 796
Hpy188III TCNNGA 6 cut(s) 293, 564, 596, 842, 901, 926
Hpy8I GTNNAC 2 cut(s) 629, 986
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 4 cut(s) 31, 613, 617, 678
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 8 cut(s) 126, 220, 308, 332, 371, 411, 656, 724
HpyF10VI GCNNNNNNNGC 5 cut(s) 226, 269, 305, 435, 503
HpyF3I CTNAG 4 cut(s) 224, 425, 795, 861
Hsp92II CATG 4 cut(s) 29, 126, 511, 599
HspAI GCGC 1 cut(s) 436
Ksp22I TGATCA 1 cut(s) 555
Kzo9I GATC 4 cut(s) 555, 649, 977, 991
LmnI GCTCC 2 cut(s) 101, 426
Lsp1109I GCAGC 2 cut(s) 316, 581
LweI GCATC 2 cut(s) 317, 462
MabI ACCWGGT 1 cut(s) 816
MaeI CTAG 1 cut(s) 416
MaeIII GTNAC 1 cut(s) 510
MalI GATC 4 cut(s) 557, 651, 979, 993
MboI GATC 4 cut(s) 555, 649, 977, 991
MboII GAAGA 5 cut(s) 9, 479, 611, 824, 1023
MfeI CAATTG 1 cut(s) 632
MhlI GDGCHC 1 cut(s) 423
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 7 cut(s) 405, 534, 632, 836, 904, 918, 959
MluNI TGGCCA 1 cut(s) 197
MnlI CCTC 8 cut(s) 17, 74, 271, 457, 635, 696, 792, 838
Mox20I TGGCCA 1 cut(s) 197
MscI TGGCCA 1 cut(s) 197
MseI TTAA 2 cut(s) 833, 867
Msp20I TGGCCA 1 cut(s) 197
MspR9I CCNGG 2 cut(s) 117, 818
MunI CAATTG 1 cut(s) 632
MvaI CCWGG 2 cut(s) 117, 818
MvnI CGCG 1 cut(s) 438
MwoI GCNNNNNNNGC 5 cut(s) 226, 269, 305, 435, 503
NdeI CATATG 1 cut(s) 687
NdeII GATC 4 cut(s) 555, 649, 977, 991
NlaIII CATG 4 cut(s) 29, 126, 511, 599
NlaIV GGNNCC 2 cut(s) 211, 317
NmuCI GTSAC 1 cut(s) 510
PagI TCATGA 1 cut(s) 595
PceI AGGCCT 1 cut(s) 706
PfeI GAWTC 1 cut(s) 478
PkrI GCNGC 2 cut(s) 331, 571
Psp124BI GAGCTC 1 cut(s) 423
Psp6I CCWGG 2 cut(s) 115, 816
PspGI CCWGG 2 cut(s) 115, 816
PspN4I GGNNCC 2 cut(s) 211, 317
PspPI GGNCC 5 cut(s) 4, 119, 209, 315, 857
RsaI GTAC 3 cut(s) 63, 628, 828
RsaNI GTAC 3 cut(s) 62, 627, 827
SacI GAGCTC 1 cut(s) 423
SaqAI TTAA 2 cut(s) 833, 867
SatI GCNGC 2 cut(s) 330, 570
Sau3AI GATC 4 cut(s) 555, 649, 977, 991
Sau96I GGNCC 5 cut(s) 4, 119, 209, 315, 857
ScrFI CCNGG 2 cut(s) 117, 818
SduI GDGCHC 1 cut(s) 423
SexAI ACCWGGT 1 cut(s) 816
SfaNI GCATC 2 cut(s) 317, 462
SfcI CTRYAG 1 cut(s) 995
SinI GGWCC 3 cut(s) 4, 119, 209
SmlI CTYRAG 1 cut(s) 948
SmoI CTYRAG 1 cut(s) 948
Sse9I AATT 7 cut(s) 405, 534, 632, 836, 904, 918, 959
SseBI AGGCCT 1 cut(s) 706
SspMI CTAG 1 cut(s) 416
SstI GAGCTC 1 cut(s) 423
StuI AGGCCT 1 cut(s) 706
StyD4I CCNGG 2 cut(s) 115, 816
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 451
TasI AATT 7 cut(s) 405, 534, 632, 836, 904, 918, 959
TatI WGTACW 1 cut(s) 826
TfiI GAWTC 1 cut(s) 478
Tru1I TTAA 2 cut(s) 833, 867
Tru9I TTAA 2 cut(s) 833, 867
TseFI GTSAC 1 cut(s) 510
TseI GCWGC 2 cut(s) 329, 569
Tsp45I GTSAC 1 cut(s) 510
TspDTI ATGAA 4 cut(s) 246, 299, 612, 674
VpaK11BI GGWCC 3 cut(s) 4, 119, 209
XapI RAATTY 4 cut(s) 405, 534, 836, 904
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XspI CTAG 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.