RchiOBHm_Chr3g0447791

iron ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000132
Physical Location & Seq
Reverse (-)
344133 .. 344792
660 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41525

Sequence Viewer

Length: 660 bp
ATGTTCCAAATCCAAATTCATTCCCTTAATGATCTTTCTCTCTTAACTAATATCCTAGTTTTCCTAGTCATCCTAAATCTACTGAATTGGTATTGGAAGAAGACCAGTACTAGTAGCCATACTAGTTCTAGTCTTAGGTTGCCACCAGGGCCACGGAAGCTGCCTCTTATTGGGAACTTGCATCAGCTGGCTTTGGTTGGCTCTTTACCACATCATTTCTTGAGAGACTTGGCCAACAAGTATGGTCCTATGATGCATCTCAAGTTGGGACAAGTATCTGCCATTGTCATTTCATCACCAGAATTAGCCAATCAAGTATTGAAGGTACATGAGGCTTCTGCTTTCTCCAACCGACCTACTTTTCTTGCTAAGGAAGTTTTGTCCTATAATTGTTCAGGTATCATCTCTAGTCCTTGTAATGATTATTGGAGAGAAATGCGCAAGATTTGTGTATTAGAGCTCCTAAGTGCAAAGCGTGTGCAGTCATTTGTTTCATTGAGAGAAGAAGACATATGGAACCTTGTTCAATCAATTAGTCACTTATCACAGTCTTTCAACCTTAGCGAGATGATTTTCTCCATGATAAACAACATTACTGCCCGTGCAGCCTTGGGAAAAAAAATGCACACATCAACAAGAATTCACATCATTGATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

219

Amino Acids

24.75

Weight (kDa)

9.64

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 48 - 209 1.1e-20 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 440
AclWI GGATC 1 cut(s) 647
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 2 cut(s) 15, 639
AfaI GTAC 2 cut(s) 109, 327
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 3 cut(s) 322, 527, 556
AhlI ACTAGT 2 cut(s) 110, 122
AjnI CCWGG 1 cut(s) 145
AjuI GAANNNNNNNTTGG 1 cut(s) 32
AluBI AGCT 3 cut(s) 160, 187, 460
AluI AGCT 3 cut(s) 160, 187, 460
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 1 cut(s) 647
AoxI GGCC 2 cut(s) 149, 231
ApeKI GCWGC 2 cut(s) 160, 605
ApoI RAATTY 2 cut(s) 15, 639
AspLEI GCGC 1 cut(s) 441
AspS9I GGNCC 2 cut(s) 149, 245
AsuHPI GGTGA 1 cut(s) 288
AvaII GGWCC 1 cut(s) 245
BalI TGGCCA 1 cut(s) 233
BanII GRGCYC 1 cut(s) 462
BbsI GAAGAC 2 cut(s) 107, 513
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 2 cut(s) 147, 617
BciT130I CCWGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 219
BcuI ACTAGT 2 cut(s) 110, 122
BfaI CTAG 6 cut(s) 56, 65, 111, 123, 129, 408
BglI GCCNNNNNGGC 1 cut(s) 148
BisI GCNGC 2 cut(s) 161, 606
BlsI GCNGC 2 cut(s) 162, 607
BmcAI AGTACT 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 147
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 2 cut(s) 149, 245
BmiI GGNNCC 1 cut(s) 518
BmrFI CCNGG 1 cut(s) 147
BmsI GCATC 3 cut(s) 190, 243, 265
BpiI GAAGAC 2 cut(s) 107, 513
Bpu10I CCTNAGC 2 cut(s) 369, 560
BpuEI CTTGAG 2 cut(s) 241, 245
BsaJI CCNNGG 3 cut(s) 146, 152, 609
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 3 cut(s) 146, 152, 609
BseGI GGATG 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 105
BseXI GCAGC 2 cut(s) 147, 617
BsgI GTGCAG 2 cut(s) 500, 624
BshFI GGCC 2 cut(s) 151, 233
BsiHKAI GWGCWC 1 cut(s) 462
BslFI GGGAC 1 cut(s) 282
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 282
BsnI GGCC 2 cut(s) 151, 233
Bsp1286I GDGCHC 1 cut(s) 462
Bsp143I GATC 2 cut(s) 31, 652
BspANI GGCC 2 cut(s) 151, 233
BspLI GGNNCC 1 cut(s) 518
BspPI GGATC 1 cut(s) 647
BsrI ACTGG 1 cut(s) 105
BssECI CCNNGG 3 cut(s) 146, 152, 609
BssMI GATC 2 cut(s) 31, 652
BssT1I CCWWGG 1 cut(s) 609
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 549
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 4 cut(s) 134, 369, 464, 560
BstDSI CCRYGG 1 cut(s) 152
BstF5I GGATG 1 cut(s) 69
BstHHI GCGC 1 cut(s) 441
BstKTI GATC 2 cut(s) 34, 655
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 2 cut(s) 31, 652
BstMWI GCNNNNNNNGC 3 cut(s) 148, 157, 605
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 145
BstV1I GCAGC 2 cut(s) 147, 617
BstV2I GAAGAC 2 cut(s) 107, 513
BsuRI GGCC 2 cut(s) 151, 233
BtgI CCRYGG 1 cut(s) 152
BtsCI GGATG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 189
CfoI GCGC 1 cut(s) 441
Cfr13I GGNCC 2 cut(s) 149, 245
Csp6I GTAC 2 cut(s) 108, 326
CviAII CATG 2 cut(s) 329, 580
CviQI GTAC 2 cut(s) 108, 326
DdeI CTNAG 4 cut(s) 134, 369, 464, 560
DpnI GATC 2 cut(s) 33, 654
DpnII GATC 2 cut(s) 31, 652
EaeI YGGCCR 1 cut(s) 231
Ecl136II GAGCTC 1 cut(s) 460
Eco130I CCWWGG 1 cut(s) 609
Eco24I GRGCYC 1 cut(s) 462
Eco47I GGWCC 1 cut(s) 245
Eco53kI GAGCTC 1 cut(s) 460
EcoICRI GAGCTC 1 cut(s) 460
EcoRI GAATTC 1 cut(s) 639
EcoRII CCWGG 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 609
EcoT22I ATGCAT 1 cut(s) 258
EcoT38I GRGCYC 1 cut(s) 462
ErhI CCWWGG 1 cut(s) 609
FaeI CATG 2 cut(s) 332, 583
FaiI YATR 8 cut(s) 120, 243, 251, 330, 387, 512, 514, 581
FaqI GGGAC 1 cut(s) 282
FatI CATG 2 cut(s) 328, 579
FauNDI CATATG 1 cut(s) 512
Fnu4HI GCNGC 2 cut(s) 161, 606
FokI GGATG 1 cut(s) 56
FriOI GRGCYC 1 cut(s) 462
Fsp4HI GCNGC 2 cut(s) 161, 606
FspBI CTAG 6 cut(s) 56, 65, 111, 123, 129, 408
FspI TGCGCA 1 cut(s) 440
GlaI GCGC 1 cut(s) 440
GluI GCNGC 2 cut(s) 161, 606
HaeIII GGCC 2 cut(s) 151, 233
HhaI GCGC 1 cut(s) 441
Hin1II CATG 2 cut(s) 332, 583
Hin6I GCGC 1 cut(s) 439
HinP1I GCGC 1 cut(s) 439
HphI GGTGA 1 cut(s) 288
Hpy188III TCNNGA 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 316
HpyCH4III ACNGT 1 cut(s) 549
HpyCH4V TGCA 6 cut(s) 181, 256, 470, 481, 605, 625
HpyF10VI GCNNNNNNNGC 3 cut(s) 148, 157, 605
HpyF3I CTNAG 4 cut(s) 134, 369, 464, 560
Hsp92II CATG 2 cut(s) 332, 583
HspAI GCGC 1 cut(s) 439
Kzo9I GATC 2 cut(s) 31, 652
LmnI GCTCC 1 cut(s) 465
LpnPI CCDG 6 cut(s) 118, 132, 159, 173, 312, 381
Lsp1109I GCAGC 2 cut(s) 147, 617
LweI GCATC 3 cut(s) 190, 243, 265
MaeI CTAG 6 cut(s) 56, 65, 111, 123, 129, 408
MaeIII GTNAC 1 cut(s) 536
MalI GATC 2 cut(s) 33, 654
MboI GATC 2 cut(s) 31, 652
MboII GAAGA 4 cut(s) 109, 112, 515, 518
MhlI GDGCHC 1 cut(s) 462
MlsI TGGCCA 1 cut(s) 233
MluCI AATT 6 cut(s) 15, 85, 302, 388, 531, 639
MluNI TGGCCA 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 372
MnlI CCTC 2 cut(s) 174, 325
Mox20I TGGCCA 1 cut(s) 233
Mph1103I ATGCAT 1 cut(s) 258
MscI TGGCCA 1 cut(s) 233
MseI TTAA 2 cut(s) 27, 44
Msp20I TGGCCA 1 cut(s) 233
MspA1I CMGCKG 1 cut(s) 187
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 3 cut(s) 148, 157, 605
NdeI CATATG 1 cut(s) 512
NdeII GATC 2 cut(s) 31, 652
NlaIII CATG 2 cut(s) 332, 583
NlaIV GGNNCC 1 cut(s) 518
NmuCI GTSAC 1 cut(s) 536
NsbI TGCGCA 1 cut(s) 440
NsiI ATGCAT 1 cut(s) 258
PkrI GCNGC 2 cut(s) 162, 607
Psp124BI GAGCTC 1 cut(s) 462
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 518
PspPI GGNCC 2 cut(s) 149, 245
PvuII CAGCTG 1 cut(s) 187
RsaI GTAC 2 cut(s) 109, 327
RsaNI GTAC 2 cut(s) 108, 326
SacI GAGCTC 1 cut(s) 462
SaqAI TTAA 2 cut(s) 27, 44
SatI GCNGC 2 cut(s) 161, 606
Sau3AI GATC 2 cut(s) 31, 652
Sau96I GGNCC 2 cut(s) 149, 245
ScaI AGTACT 1 cut(s) 109
ScrFI CCNGG 1 cut(s) 147
SduI GDGCHC 1 cut(s) 462
SetI ASST 9 cut(s) 140, 162, 189, 327, 358, 400, 462, 522, 561
SfaNI GCATC 3 cut(s) 190, 243, 265
SinI GGWCC 1 cut(s) 245
SmlI CTYRAG 2 cut(s) 220, 260
SmoI CTYRAG 2 cut(s) 220, 260
SpeI ACTAGT 2 cut(s) 110, 122
Sse9I AATT 6 cut(s) 15, 85, 302, 388, 531, 639
SspMI CTAG 6 cut(s) 56, 65, 111, 123, 129, 408
SstI GAGCTC 1 cut(s) 462
StyD4I CCNGG 1 cut(s) 145
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 1 cut(s) 549
TasI AATT 6 cut(s) 15, 85, 302, 388, 531, 639
TatI WGTACW 1 cut(s) 107
Tru1I TTAA 2 cut(s) 27, 44
Tru9I TTAA 2 cut(s) 27, 44
TseFI GTSAC 1 cut(s) 536
TseI GCWGC 2 cut(s) 160, 605
Tsp45I GTSAC 1 cut(s) 536
TspDTI ATGAA 3 cut(s) 8, 282, 483
TspGWI ACGGA 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 245
XapI RAATTY 2 cut(s) 15, 639
XspI CTAG 6 cut(s) 56, 65, 111, 123, 129, 408
ZrmI AGTACT 1 cut(s) 109
Zsp2I ATGCAT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.