Rmu_co8350865.1_g000001

iron ion binding

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8350865.1
Physical Location & Seq
Forward (+)
55 .. 585
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8350865.1_g000001.1.cds

Sequence Viewer

Length: 531 bp
atggagaaagcacaggtcgagatacgccaagttgttgcaggaaagaagaaaattcaagacgcagacattaagaaactagactacttgaagttggtagtaaaagaaacactacgattgcaccctcctattgccttaatcctaagacaggcaaacaaaagatgcaaagtcagtggatatgatataccgtctggagccagggtcttggtcaatgcttgggcattaggaagagacccgaaacattggggcactaatgctgattgctttgagcctgagaggtttcaaggttcttccattgattttaaagggtccgactttgaattcattccatttggagctggtaagagactgtgtccaggcatctcatttggaattgctactgttgagattgcactttctcagttgctctactacttcaactggaaactcccaaatgggacaaacccacaagagcttgacatgactgaatctatgggattgagcactaggaagaaaaacgaattgaaagtgattgcaattcctttctttccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

176

Amino Acids

19.8

Weight (kDa)

9.36

Isoelectric Point (pI)

23.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 51, 317
AfiI CCNNNNNNNGG 1 cut(s) 145
AgsI TTSAA 6 cut(s) 56, 88, 281, 317, 415, 502
AjnI CCWGG 2 cut(s) 194, 352
AluBI AGCT 2 cut(s) 335, 451
AluI AGCT 2 cut(s) 335, 451
Alw21I GWGCWC 1 cut(s) 482
Alw26I GTCTC 2 cut(s) 222, 337
ApoI RAATTY 2 cut(s) 51, 317
Asp700I GAANNNNTTC 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 306
AvaII GGWCC 1 cut(s) 306
BaeGI GKGCMC 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 482
BciT130I CCWGG 2 cut(s) 196, 354
BcoDI GTCTC 2 cut(s) 222, 337
BfaI CTAG 2 cut(s) 77, 483
Bme1390I CCNGG 2 cut(s) 196, 354
Bme18I GGWCC 1 cut(s) 306
BmgT120I GGNCC 1 cut(s) 306
BmiI GGNNCC 2 cut(s) 193, 307
BmrFI CCNGG 2 cut(s) 196, 354
BmsI GCATC 2 cut(s) 149, 366
BpmI CTGGAG 1 cut(s) 210
BsaI GGTCTC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 195
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse1I ACTGG 1 cut(s) 422
BseBI CCWGG 2 cut(s) 196, 354
BseDI CCNNGG 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMII CTCAG 2 cut(s) 261, 410
BseNI ACTGG 1 cut(s) 422
BseSI GKGCMC 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 482
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 1 cut(s) 145
BsmAI GTCTC 2 cut(s) 222, 337
BsmFI GGGAC 1 cut(s) 448
Bso31I GGTCTC 1 cut(s) 222
Bsp1286I GDGCHC 2 cut(s) 248, 482
BspCNI CTCAG 2 cut(s) 262, 409
BspLI GGNNCC 2 cut(s) 193, 307
BspTNI GGTCTC 1 cut(s) 222
BsrI ACTGG 1 cut(s) 422
BssECI CCNNGG 1 cut(s) 195
Bst2UI CCWGG 2 cut(s) 196, 354
Bst4CI ACNGT 3 cut(s) 186, 348, 379
Bst6I CTCTTC 1 cut(s) 220
BstDEI CTNAG 3 cut(s) 140, 270, 396
BstENI CCTNNNNNAGG 1 cut(s) 143
BstMAI GTCTC 2 cut(s) 222, 337
BstNI CCWGG 2 cut(s) 196, 354
BstSCI CCNGG 2 cut(s) 194, 352
BstSLI GKGCMC 1 cut(s) 248
BstXI CCANNNNNNTGG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 306
CseI GACGC 1 cut(s) 68
CspCI CAANNNNNGTGG 2 cut(s) 151, 186
CviAII CATG 1 cut(s) 457
CviJI RGCY 4 cut(s) 194, 268, 335, 451
CviKI_1 RGCY 4 cut(s) 194, 268, 335, 451
DdeI CTNAG 3 cut(s) 140, 270, 396
DraI TTTAAA 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 220
Eco31I GGTCTC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 306
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 317
EcoRII CCWGG 2 cut(s) 194, 352
FaeI CATG 1 cut(s) 460
FaiI YATR 5 cut(s) 177, 182, 458, 470, 529
FaqI GGGAC 1 cut(s) 448
FatI CATG 1 cut(s) 456
FspBI CTAG 2 cut(s) 77, 483
GsuI CTGGAG 1 cut(s) 210
HgaI GACGC 1 cut(s) 68
Hin1II CATG 1 cut(s) 460
HinfI GANTC 1 cut(s) 464
Hpy188I TCNGA 1 cut(s) 310
Hpy188III TCNNGA 3 cut(s) 19, 56, 189
HpyCH4III ACNGT 3 cut(s) 186, 348, 379
HpyCH4V TGCA 5 cut(s) 38, 118, 162, 389, 512
HpyF3I CTNAG 3 cut(s) 140, 270, 396
Hsp92II CATG 1 cut(s) 460
LmnI GCTCC 2 cut(s) 191, 332
LweI GCATC 2 cut(s) 149, 366
MaeI CTAG 2 cut(s) 77, 483
MboII GAAGA 4 cut(s) 58, 237, 279, 499
MhlI GDGCHC 2 cut(s) 248, 482
MluCI AATT 5 cut(s) 51, 317, 369, 497, 513
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 2 cut(s) 132, 267
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 3 cut(s) 69, 134, 300
MspR9I CCNGG 2 cut(s) 196, 354
MvaI CCWGG 2 cut(s) 196, 354
NlaIII CATG 1 cut(s) 460
NlaIV GGNNCC 2 cut(s) 193, 307
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 464
PflFI GACNNNGTC 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 194, 352
PspGI CCWGG 2 cut(s) 194, 352
PspN4I GGNNCC 2 cut(s) 193, 307
PspPI GGNCC 1 cut(s) 306
PsyI GACNNNGTC 1 cut(s) 348
SaqAI TTAA 3 cut(s) 69, 134, 300
Sau96I GGNCC 1 cut(s) 306
ScrFI CCNGG 2 cut(s) 196, 354
SduI GDGCHC 2 cut(s) 248, 482
SetI ASST 5 cut(s) 18, 278, 286, 337, 453
SfaNI GCATC 2 cut(s) 149, 366
SinI GGWCC 1 cut(s) 306
Sse9I AATT 5 cut(s) 51, 317, 369, 497, 513
SspMI CTAG 2 cut(s) 77, 483
StyD4I CCNGG 2 cut(s) 194, 352
TaaI ACNGT 3 cut(s) 186, 348, 379
TaqI TCGA 1 cut(s) 18
TasI AATT 5 cut(s) 51, 317, 369, 497, 513
TfiI GAWTC 1 cut(s) 464
Tru1I TTAA 3 cut(s) 69, 134, 300
Tru9I TTAA 3 cut(s) 69, 134, 300
TscAI CASTG 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 310
TspRI CASTG 1 cut(s) 175
Tth111I GACNNNGTC 1 cut(s) 348
VpaK11BI GGWCC 1 cut(s) 306
XagI CCTNNNNNAGG 1 cut(s) 143
XapI RAATTY 2 cut(s) 51, 317
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 2 cut(s) 77, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.