Rroxscaffold_4G00315520

iron ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000132
Physical Location & Seq
Reverse (-)
39839503 .. 39841147
1645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00315520.1

Sequence Viewer

Length: 1542 bp
ATGGTGCCCCTAATGCTTCAAATTCATAATGTTCCTTCCCTTCCTCTCTATACTTCTCTGATTGCGCTAGTTATCCTAGTTCTATATTGGAAGAGATTGAAAAGCAGCCATACCTCAAGTCTAAGTCTGCCCCCAGGTCCGCGGAAGCTACCAGTTATAGGAAACTTGCTTCAGTTGGTAGGCTCGCTACCACATCATTCTCTAAGAGACTTGGCCAAGAGGTATGGACCAATCATGCACATCAAAGTGGGACAAGTATCAGCCGTAGTGATTTCATCTCCGGAACTAGCTGAAGAGGTGTTGAAGACACATGAGACTGCCTTCTCGCAACGCCCCACTGTTTTTGCTATTGAGGTTTTGTCTTATGATCTTTCAAGTATCCTCTTTTGTCCTAATAATGATTACTGGAGGCAAATGCGCAAGATTTGCGTGTCGGAGCTCTTAAGTACAAAGCGTGTGCATTCTTTTGCATCAATAAGAGAAGAAGAGGCATGGAATCTTGTCGAAACAGTTCATTCTTCAGCATCACAGCCACAGCTAGTGGTCAACCTCAGCGAGATGATTTTCTCCATGCAAAACGGCATCACTGCCCGGGCAGCCTTGGGGAAGAAGTGCAAACATCAACAAGAATTTACCTCATTGATCGATGAAATCAACCAGCTTGCAGGAGGCTTTGCAGTGCCAGATTTGTTCCCTTCTCTCAAATTCCTTCGTCATGTCACACGTTTCAAGCCTGCCCTTGAGAAAATACACGGAAAAATGGACAGGATGCTTGATGAAATCATCAATGATCATAAAGTGAAAAGAGAATCGTCAGCTGGTGATGATCCTCTGCAAGAAGATATAGTTGATGTGCTTTTACAACTTCAGGAGTGTAGTGATCAGATCCAGCTTGATGTCAAAACCAAGCATATCAAAGCTATCACAATGGACATGTATACTTCTGGAAGTGAAACTTCAGCAACTACCACAGAATGGGCAATGGCAGAACTAGTGAGAAATCCAAGAGTAATGGAGAAAGCACAAGCTGAGATACGACAACTTCTTGCAGGCAAGAAGAAAATCCATGATGCAGACATTAAAAAACTAGACTACCTGAAATTGGTCGTAAAGGAAACTCTACGGTTACACCCTCCTCTTGCCTTAATTGCAAGACAAGCCACTCAGACATGTAAAATTAGAGGATATGATATACCATCTGAAACCAAACTCCTGGTCAATGCTTGGGCAATTGGGAGAGACCGAAGGCATTGGGGCGCTAGTGCTGACTGCTTTGAGCCTGAGAGGTTCCAAGGTTCTTCCATTGATTTTAAAGGGACCAACTTCGAATTTATTCCATTTGGGGCTGGTAAGAGAATGTGTCCAGGCATATCATTTGGAACTGCATCAGTTGAGATTGCACTTGCTCAACTGTTGTACCACTTCAACTGGAAACTCCCCAATGGGACAAAATTAGAAGAGCTTGACATGACTGAATCAATGGGAATGAGCGCAAGGAAGAAGAATGACTTGAAAGTTATTGCCATTCCTTACATTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

513

Amino Acids

57.75

Weight (kDa)

8.85

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 44 - 504 1.1e-98 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 419
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 1 cut(s) 975
AccI GTMKAC 1 cut(s) 938
AccII CGCG 1 cut(s) 142
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 2 cut(s) 140, 142
AclWI GGATC 2 cut(s) 821, 880
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 4 cut(s) 21, 629, 704, 1328
AcuI CTGAAG 5 cut(s) 155, 312, 504, 851, 942
AfaI GTAC 2 cut(s) 448, 1418
AfiI CCNNNNNNNGG 3 cut(s) 158, 975, 1102
AflII CTTAAG 1 cut(s) 442
AflIII ACRYGT 3 cut(s) 722, 933, 1169
AgsI TTSAA 7 cut(s) 20, 100, 304, 375, 730, 1426, 1513
AhlI ACTAGT 1 cut(s) 991
AjnI CCWGG 3 cut(s) 133, 1212, 1363
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 3 cut(s) 201, 308, 1233
AlwI GGATC 2 cut(s) 821, 880
Ama87I CYCGRG 1 cut(s) 591
Aor13HI TCCGGA 1 cut(s) 280
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 2 cut(s) 105, 596
ApoI RAATTY 4 cut(s) 21, 629, 704, 1328
ArsI GACNNNNNNTTYG 2 cut(s) 1200, 1232
Asp700I GAANNNNTTC 2 cut(s) 510, 1332
AspLEI GCGC 4 cut(s) 67, 420, 1259, 1493
AspS9I GGNCC 3 cut(s) 137, 227, 1317
AsuC2I CCSGG 2 cut(s) 592, 593
AsuHPI GGTGA 1 cut(s) 833
AsuII TTCGAA 1 cut(s) 1326
AvaI CYCGRG 1 cut(s) 591
AvaII GGWCC 3 cut(s) 137, 227, 1317
BaeGI GKGCMC 1 cut(s) 9
BaeI ACNNNNGTAYC 2 cut(s) 1400, 1433
BalI TGGCCA 1 cut(s) 215
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 441
BbsI GAAGAC 1 cut(s) 311
Bbv12I GWGCWC 1 cut(s) 441
BbvCI CCTCAGC 1 cut(s) 551
BbvI GCAGC 2 cut(s) 117, 608
BccI CCATC 1 cut(s) 1204
BceAI ACGGC 2 cut(s) 248, 595
BciT130I CCWGG 3 cut(s) 135, 1214, 1365
BciVI GTATCC 1 cut(s) 389
BclI TGATCA 2 cut(s) 790, 880
BcnI CCSGG 2 cut(s) 592, 593
BcoDI GTCTC 3 cut(s) 201, 308, 1233
BcuI ACTAGT 1 cut(s) 991
BfaI CTAG 7 cut(s) 68, 77, 287, 539, 992, 1088, 1260
BfoI RGCGCY 1 cut(s) 1260
BfrI CTTAAG 1 cut(s) 442
BfuI GTATCC 1 cut(s) 389
BisI GCNGC 2 cut(s) 106, 597
BlsI GCNGC 2 cut(s) 107, 598
Bme1390I CCNGG 5 cut(s) 135, 592, 593, 1214, 1365
Bme18I GGWCC 3 cut(s) 137, 227, 1317
BmeT110I CYCGRG 1 cut(s) 591
BmgT120I GGNCC 3 cut(s) 137, 227, 1317
BmiI GGNNCC 3 cut(s) 6, 1289, 1318
BmrFI CCNGG 5 cut(s) 135, 592, 593, 1214, 1365
BmsI GCATC 6 cut(s) 479, 533, 591, 759, 1060, 1394
BpiI GAAGAC 1 cut(s) 311
BpmI CTGGAG 1 cut(s) 427
Bpu10I CCTNAGC 1 cut(s) 551
Bpu14I TTCGAA 1 cut(s) 1326
BpuEI CTTGAG 2 cut(s) 100, 761
BpuMI CCSGG 2 cut(s) 592, 593
Bsa29I ATCGAT 1 cut(s) 645
BsaI GGTCTC 1 cut(s) 1233
BsaJI CCNNGG 5 cut(s) 133, 140, 591, 600, 1291
BsaWI WCCGGW 1 cut(s) 280
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 975, 1102
Bse1I ACTGG 3 cut(s) 152, 410, 1433
Bse3DI GCAATG 1 cut(s) 987
BseAI TCCGGA 1 cut(s) 280
BseBI CCWGG 3 cut(s) 135, 1214, 1365
BseCI ATCGAT 1 cut(s) 645
BseDI CCNNGG 5 cut(s) 133, 140, 591, 600, 1291
BseGI GGATG 1 cut(s) 774
BseLI CCNNNNNNNGG 3 cut(s) 158, 975, 1102
BseMI GCAATG 1 cut(s) 987
BseMII CTCAG 4 cut(s) 565, 1020, 1178, 1272
BseNI ACTGG 3 cut(s) 152, 410, 1433
BseRI GAGGAG 1 cut(s) 1125
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 2 cut(s) 117, 608
Bsh1236I CGCG 1 cut(s) 142
BshFI GGCC 1 cut(s) 215
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 645
BsiHKAI GWGCWC 1 cut(s) 441
BsiHKCI CYCGRG 1 cut(s) 591
BsiSI CCGG 2 cut(s) 281, 592
BslFI GGGAC 3 cut(s) 264, 1330, 1459
BslI CCNNNNNNNGG 3 cut(s) 158, 975, 1102
BsmAI GTCTC 3 cut(s) 201, 308, 1233
BsmFI GGGAC 3 cut(s) 264, 1330, 1459
BsmI GAATGC 1 cut(s) 460
BsnI GGCC 1 cut(s) 215
Bso31I GGTCTC 1 cut(s) 1233
BsoBI CYCGRG 1 cut(s) 591
Bsp119I TTCGAA 1 cut(s) 1326
Bsp1286I GDGCHC 2 cut(s) 9, 441
Bsp13I TCCGGA 1 cut(s) 280
Bsp143I GATC 6 cut(s) 367, 642, 790, 826, 880, 885
BspACI CCGC 2 cut(s) 140, 142
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 4 cut(s) 564, 1021, 1177, 1273
BspDI ATCGAT 1 cut(s) 645
BspEI TCCGGA 1 cut(s) 280
BspFNI CGCG 1 cut(s) 142
BspLI GGNNCC 3 cut(s) 6, 1289, 1318
BspPI GGATC 2 cut(s) 821, 880
BspQI GCTCTTC 1 cut(s) 1452
BspT104I TTCGAA 1 cut(s) 1326
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 442
BspTNI GGTCTC 1 cut(s) 1233
BsrDI GCAATG 1 cut(s) 987
BsrI ACTGG 3 cut(s) 152, 410, 1433
BssECI CCNNGG 5 cut(s) 133, 140, 591, 600, 1291
BssMI GATC 6 cut(s) 367, 642, 790, 826, 880, 885
BssNAI GTATAC 1 cut(s) 939
BssT1I CCWWGG 2 cut(s) 600, 1291
Bst1107I GTATAC 1 cut(s) 939
Bst2UI CCWGG 3 cut(s) 135, 1214, 1365
Bst4CI ACNGT 4 cut(s) 340, 511, 1125, 1413
Bst6I CTCTTC 4 cut(s) 86, 288, 480, 1452
BstAFI CTTAAG 1 cut(s) 442
BstAPI GCANNNNNTGC 1 cut(s) 426
BstBI TTCGAA 1 cut(s) 1326
BstC8I GCNNGC 4 cut(s) 185, 663, 735, 1051
BstDEI CTNAG 6 cut(s) 122, 203, 551, 1029, 1164, 1281
BstDSI CCRYGG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 774
BstFNI CGCG 1 cut(s) 142
BstH2I RGCGCY 1 cut(s) 1260
BstHHI GCGC 4 cut(s) 67, 420, 1259, 1493
BstKTI GATC 6 cut(s) 370, 645, 793, 829, 883, 888
BstMAI GTCTC 3 cut(s) 201, 308, 1233
BstMBI GATC 6 cut(s) 367, 642, 790, 826, 880, 885
BstMWI GCNNNNNNNGC 5 cut(s) 13, 426, 596, 1148, 1157
BstNI CCWGG 3 cut(s) 135, 1214, 1365
BstNSI RCATGY 2 cut(s) 937, 1173
BstSCI CCNGG 5 cut(s) 133, 590, 591, 1212, 1363
BstSLI GKGCMC 1 cut(s) 9
BstUI CGCG 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 117, 608
BstV2I GAAGAC 1 cut(s) 311
BstX2I RGATCY 1 cut(s) 885
BstXI CCANNNNNNTGG 1 cut(s) 1213
BstYI RGATCY 1 cut(s) 885
BstZ17I GTATAC 1 cut(s) 939
Bsu15I ATCGAT 1 cut(s) 645
BsuI GTATCC 1 cut(s) 389
BsuRI GGCC 1 cut(s) 215
BsuTUI ATCGAT 1 cut(s) 645
BtgI CCRYGG 1 cut(s) 140
BtsCI GGATG 1 cut(s) 774
BtsI GCAGTG 2 cut(s) 585, 684
BtsIMutI CAGTG 3 cut(s) 336, 585, 684
Cac8I GCNNGC 4 cut(s) 185, 663, 735, 1051
CfoI GCGC 4 cut(s) 67, 420, 1259, 1493
Cfr13I GGNCC 3 cut(s) 137, 227, 1317
Cfr42I CCGCGG 1 cut(s) 143
Cfr9I CCCGGG 1 cut(s) 591
ClaI ATCGAT 1 cut(s) 645
Csp6I GTAC 2 cut(s) 447, 1417
CspCI CAANNNNNGTGG 2 cut(s) 325, 360
CviAII CATG 9 cut(s) 235, 311, 492, 571, 716, 934, 1067, 1170, 1468
CviQI GTAC 2 cut(s) 447, 1417
DdeI CTNAG 6 cut(s) 122, 203, 551, 1029, 1164, 1281
DpnI GATC 6 cut(s) 369, 644, 792, 828, 882, 887
DpnII GATC 6 cut(s) 367, 642, 790, 826, 880, 885
DraI TTTAAA 1 cut(s) 1312
EaeI YGGCCR 1 cut(s) 213
Eam1104I CTCTTC 4 cut(s) 86, 288, 480, 1452
EarI CTCTTC 4 cut(s) 86, 288, 480, 1452
Ecl136II GAGCTC 1 cut(s) 439
Eco130I CCWWGG 2 cut(s) 600, 1291
Eco24I GRGCYC 1 cut(s) 441
Eco31I GGTCTC 1 cut(s) 1233
Eco47I GGWCC 3 cut(s) 137, 227, 1317
Eco53kI GAGCTC 1 cut(s) 439
Eco57I CTGAAG 5 cut(s) 155, 312, 504, 851, 942
Eco88I CYCGRG 1 cut(s) 591
EcoICRI GAGCTC 1 cut(s) 439
EcoRII CCWGG 3 cut(s) 133, 1212, 1363
EcoT14I CCWWGG 2 cut(s) 600, 1291
EcoT38I GRGCYC 1 cut(s) 441
ErhI CCWWGG 2 cut(s) 600, 1291
FaeI CATG 9 cut(s) 238, 314, 495, 574, 719, 937, 1070, 1173, 1471
FalI AAGNNNNNCTT 4 cut(s) 940, 972, 1493, 1525
FaqI GGGAC 3 cut(s) 264, 1330, 1459
FatI CATG 9 cut(s) 234, 310, 491, 570, 715, 933, 1066, 1169, 1467
FbaI TGATCA 2 cut(s) 790, 880
FblI GTMKAC 1 cut(s) 938
Fnu4HI GCNGC 2 cut(s) 106, 597
FokI GGATG 1 cut(s) 781
FriOI GRGCYC 1 cut(s) 441
Fsp4HI GCNGC 2 cut(s) 106, 597
FspBI CTAG 7 cut(s) 68, 77, 287, 539, 992, 1088, 1260
FspI TGCGCA 1 cut(s) 419
GlaI GCGC 4 cut(s) 66, 419, 1258, 1492
GluI GCNGC 2 cut(s) 106, 597
GsuI CTGGAG 1 cut(s) 427
HaeII RGCGCY 1 cut(s) 1260
HaeIII GGCC 1 cut(s) 215
HapII CCGG 2 cut(s) 281, 592
HhaI GCGC 4 cut(s) 67, 420, 1259, 1493
Hin1II CATG 9 cut(s) 238, 314, 495, 574, 719, 937, 1070, 1173, 1471
Hin6I GCGC 4 cut(s) 65, 418, 1257, 1491
HinP1I GCGC 4 cut(s) 65, 418, 1257, 1491
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HinfI GANTC 3 cut(s) 496, 809, 1475
HpaII CCGG 2 cut(s) 281, 592
HphI GGTGA 1 cut(s) 833
Hpy166II GTNNAC 2 cut(s) 547, 939
Hpy188I TCNGA 5 cut(s) 60, 436, 885, 1167, 1201
Hpy188III TCNNGA 3 cut(s) 281, 869, 945
Hpy8I GTNNAC 2 cut(s) 547, 939
HpyAV CCTTC 6 cut(s) 45, 50, 331, 705, 719, 1239
HpyCH4III ACNGT 4 cut(s) 340, 511, 1125, 1413
HpyCH4IV ACGT 1 cut(s) 724
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 426, 596, 1148, 1157
HpyF3I CTNAG 6 cut(s) 122, 203, 551, 1029, 1164, 1281
HpySE526I ACGT 1 cut(s) 724
Hsp92II CATG 9 cut(s) 238, 314, 495, 574, 719, 937, 1070, 1173, 1471
HspAI GCGC 4 cut(s) 65, 418, 1257, 1491
Kpn2I TCCGGA 1 cut(s) 280
Ksp22I TGATCA 2 cut(s) 790, 880
KspI CCGCGG 1 cut(s) 143
Kzo9I GATC 6 cut(s) 367, 642, 790, 826, 880, 885
LguI GCTCTTC 1 cut(s) 1452
LmnI GCTCC 1 cut(s) 436
Lsp1109I GCAGC 2 cut(s) 117, 608
LweI GCATC 6 cut(s) 479, 533, 591, 759, 1060, 1394
MaeI CTAG 7 cut(s) 68, 77, 287, 539, 992, 1088, 1260
MaeII ACGT 1 cut(s) 724
MaeIII GTNAC 2 cut(s) 718, 1125
MalI GATC 6 cut(s) 369, 644, 792, 828, 882, 887
MboI GATC 6 cut(s) 367, 642, 790, 826, 880, 885
MfeI CAATTG 1 cut(s) 1230
MflI RGATCY 1 cut(s) 885
MhlI GDGCHC 2 cut(s) 9, 441
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 9 cut(s) 21, 629, 704, 1100, 1146, 1176, 1230, 1328, 1451
MluNI TGGCCA 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 414
Mox20I TGGCCA 1 cut(s) 215
MroI TCCGGA 1 cut(s) 280
MroXI GAANNNNTTC 2 cut(s) 510, 1332
MscI TGGCCA 1 cut(s) 215
MseI TTAA 4 cut(s) 443, 1080, 1145, 1311
MslI CAYNNNNRTG 1 cut(s) 245
Msp20I TGGCCA 1 cut(s) 215
MspA1I CMGCKG 2 cut(s) 142, 818
MspCI CTTAAG 1 cut(s) 442
MspI CCGG 2 cut(s) 281, 592
MspR9I CCNGG 5 cut(s) 135, 592, 593, 1214, 1365
MunI CAATTG 1 cut(s) 1230
Mva1269I GAATGC 1 cut(s) 460
MvaI CCWGG 3 cut(s) 135, 1214, 1365
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 5 cut(s) 13, 426, 596, 1148, 1157
NciI CCSGG 2 cut(s) 592, 593
NdeII GATC 6 cut(s) 367, 642, 790, 826, 880, 885
NlaIII CATG 9 cut(s) 238, 314, 495, 574, 719, 937, 1070, 1173, 1471
NlaIV GGNNCC 3 cut(s) 6, 1289, 1318
NmuCI GTSAC 1 cut(s) 718
NsbI TGCGCA 1 cut(s) 419
NspI RCATGY 2 cut(s) 937, 1173
NspV TTCGAA 1 cut(s) 1326
PciI ACATGT 2 cut(s) 933, 1169
PciSI GCTCTTC 1 cut(s) 1452
PctI GAATGC 1 cut(s) 460
PdmI GAANNNNTTC 2 cut(s) 510, 1332
PfeI GAWTC 3 cut(s) 496, 809, 1475
PflMI CCANNNNNTGG 1 cut(s) 975
PkrI GCNGC 2 cut(s) 107, 598
PscI ACATGT 2 cut(s) 933, 1169
Psp124BI GAGCTC 1 cut(s) 441
Psp6I CCWGG 3 cut(s) 133, 1212, 1363
PspGI CCWGG 3 cut(s) 133, 1212, 1363
PspN4I GGNNCC 3 cut(s) 6, 1289, 1318
PspPI GGNCC 3 cut(s) 137, 227, 1317
PsuI RGATCY 1 cut(s) 885
PvuII CAGCTG 1 cut(s) 818
RsaI GTAC 2 cut(s) 448, 1418
RsaNI GTAC 2 cut(s) 447, 1417
RseI CAYNNNNRTG 1 cut(s) 245
SacI GAGCTC 1 cut(s) 441
SacII CCGCGG 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 1452
SaqAI TTAA 4 cut(s) 443, 1080, 1145, 1311
SatI GCNGC 2 cut(s) 106, 597
Sau3AI GATC 6 cut(s) 367, 642, 790, 826, 880, 885
Sau96I GGNCC 3 cut(s) 137, 227, 1317
ScrFI CCNGG 5 cut(s) 135, 592, 593, 1214, 1365
SduI GDGCHC 2 cut(s) 9, 441
SfaNI GCATC 6 cut(s) 479, 533, 591, 759, 1060, 1394
Sfr303I CCGCGG 1 cut(s) 143
SfuI TTCGAA 1 cut(s) 1326
SgrBI CCGCGG 1 cut(s) 143
SinI GGWCC 3 cut(s) 137, 227, 1317
SmaI CCCGGG 1 cut(s) 593
SmiMI CAYNNNNRTG 1 cut(s) 245
SmlI CTYRAG 3 cut(s) 115, 442, 740
SmoI CTYRAG 3 cut(s) 115, 442, 740
SpeI ACTAGT 1 cut(s) 991
SrfI GCCCGGGC 1 cut(s) 593
Sse9I AATT 9 cut(s) 21, 629, 704, 1100, 1146, 1176, 1230, 1328, 1451
SsiI CCGC 2 cut(s) 140, 142
SspMI CTAG 7 cut(s) 68, 77, 287, 539, 992, 1088, 1260
SstI GAGCTC 1 cut(s) 441
StyD4I CCNGG 5 cut(s) 133, 590, 591, 1212, 1363
StyI CCWWGG 2 cut(s) 600, 1291
TaaI ACNGT 4 cut(s) 340, 511, 1125, 1413
TaiI ACGT 1 cut(s) 727
TaqI TCGA 3 cut(s) 504, 645, 1326
TaqII GACCGA 1 cut(s) 1257
TasI AATT 9 cut(s) 21, 629, 704, 1100, 1146, 1176, 1230, 1328, 1451
TatI WGTACW 1 cut(s) 446
TfiI GAWTC 3 cut(s) 496, 809, 1475
Tru1I TTAA 4 cut(s) 443, 1080, 1145, 1311
Tru9I TTAA 4 cut(s) 443, 1080, 1145, 1311
TscAI CASTG 3 cut(s) 343, 592, 684
TseFI GTSAC 1 cut(s) 718
TseI GCWGC 2 cut(s) 105, 596
Tsp45I GTSAC 1 cut(s) 718
TspDTI ATGAA 5 cut(s) 14, 264, 503, 663, 792
TspGWI ACGGA 1 cut(s) 768
TspMI CCCGGG 1 cut(s) 591
TspRI CASTG 3 cut(s) 343, 592, 684
Van91I CCANNNNNTGG 1 cut(s) 975
Vha464I CTTAAG 1 cut(s) 442
VpaK11BI GGWCC 3 cut(s) 137, 227, 1317
XapI RAATTY 4 cut(s) 21, 629, 704, 1328
XceI RCATGY 2 cut(s) 937, 1173
XmaI CCCGGG 1 cut(s) 591
XmiI GTMKAC 1 cut(s) 938
XmnI GAANNNNTTC 2 cut(s) 510, 1332
XspI CTAG 7 cut(s) 68, 77, 287, 539, 992, 1088, 1260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.