Rorug01G0050000

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
8212295 .. 8212684
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0050000.1

Sequence Viewer

Length: 390 bp
ATGGCTGCAGAGGAATGGATACGTCAAATTAAGAGAAAACTGAAAAATCAAAGAGTTCCTTTTGGGAGAATAGTAATGAGAACATCATTGAAAAAGTTCAGTCCCATCGCGCTACAAGAATGGAACACTAATATCTTTGGGAATATTTTCAGAAGGAAGAGGAGGTTACTTGTTAGACTCAGCAGAATCCAGAAGGCTTTGGATGCCAGAAATAATCCTTACCTTGTCAAGTTGGAAGAAGAACTAATTCAGGAGTATGAATGGATAAGGGATCAAGAGGCTATGTTTTGGCAACAAAAAGCGAGAGTAAAGTGGTTGCAGGAGGGAGACAAAAATTCTAAATTCTTCCCACTTGACAACCATGGTAAGAAGGAGAAGAAACAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

129

Amino Acids

15.8

Weight (kDa)

10.49

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000132)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03210 FvH4_3g24170 FvH4_3g24171 FvH4_6g02110 FvH4_6g02110 FvH4_6g21500 FvH4_6g44530 FvH4_6g44700 FvH4_6g44700 FvH4_6g44710 FvH4_6g44730 FvH4_6g44750 FvH4_6g44751 FvH4_6g44751 FvH4_6g53570
malus_domestica MD00G1138500.v1.1 MD00G1138600.v1.1 MD00G1138700.v1.1 MD00G1153200.v1.1 MD00G1153300.v1.1 MD00G1153400.v1.1 MD00G1153500.v1.1 MD00G1153600.v1.1 MD00G1153800.v1.1 MD00G1153900.v1.1 MD00G1154000.v1.1 MD03G1187300.v1.1 MD04G1245500.v1.1 MD11G1202200.v1.1 MD11G1202300.v1.1 MD11G1202500.v1.1 MD14G1096600.v1.1 MD14G1096700.v1.1 MD17G1000100.v1.1 MD17G1000200.v1.1 MD17G1000300.v1.1
prunus_persica Prupe.1G492000_v2.0.a1 Prupe.1G492100_v2.0.a1 Prupe.2G073800_v2.0.a1 Prupe.2G073900_v2.0.a1 Prupe.2G074300_v2.0.a1 Prupe.3G306800_v2.0.a1 Prupe.4G237900_v2.0.a1 Prupe.4G238000_v2.0.a1 Prupe.4G238200_v2.0.a1 Prupe.4G238300_v2.0.a1 Prupe.4G238600_v2.0.a1 Prupe.4G239200_v2.0.a1 Prupe.4G239300_v2.0.a1
pyrus_communis pycom03g13950 pycom03g14010 pycom04g21620 pycom04g21630 pycom111g00820 pycom11g17490 pycom11g17500 pycom17g00860 pycom17g00880
rosa_chinensis RchiOBHm_Chr1g0325151 RchiOBHm_Chr1g0329431 RchiOBHm_Chr1g0334551 RchiOBHm_Chr1g0334561 RchiOBHm_Chr1g0336531 RchiOBHm_Chr1g0336541 RchiOBHm_Chr2g0175621 RchiOBHm_Chr2g0175641 RchiOBHm_Chr2g0175651 RchiOBHm_Chr2g0175701 RchiOBHm_Chr2g0175711 RchiOBHm_Chr3g0447771 RchiOBHm_Chr3g0447781 RchiOBHm_Chr3g0447791 RchiOBHm_Chr3g0447801 RchiOBHm_Chr5g0043061 RchiOBHm_Chr5g0043071 RchiOBHm_Chr5g0043221 RchiOBHm_Chr5g0043231 RchiOBHm_Chr5g0043921 RchiOBHm_Chr5g0054481 RchiOBHm_Chr5g0054491 RchiOBHm_Chr5g0054511 RchiOBHm_Chr5g0054551 RchiOBHm_Chr5g0054561 RchiOBHm_Chr5g0054581 RchiOBHm_Chr6g0296341
rosa_laevigata RLG00000011704 RLG00000022344 RLG00000022345 RLG00000022350 RLG00000022351 RLG00000025970 RLG00000025971 RLG00000025972 RLG00000029355 RLG00000029356 RLG00000029886 RLG00000030155 RLG00000034172 RLG00000034938
rosa_multiflora Rmu_co8138254.1_g000001 Rmu_co8268883.1_g000001 Rmu_co8271167.1_g000001 Rmu_co8294571.1_g000001 Rmu_co8350865.1_g000001 Rmu_co8364355.1_g000001 Rmu_co8416839.1_g000001 Rmu_sc0000698.1_g000089 Rmu_sc0000698.1_g000146 Rmu_sc0000998.1_g000014 Rmu_sc0000998.1_g000015 Rmu_sc0000998.1_g000020 Rmu_sc0000998.1_g000021 Rmu_sc0001478.1_g000005 Rmu_sc0001654.1_g000011 Rmu_sc0001981.1_g000002 Rmu_sc0002655.1_g000005 Rmu_sc0002655.1_g000011 Rmu_sc0002655.1_g000018 Rmu_sc0005044.1_g000025 Rmu_sc0005591.1_g000001 Rmu_sc0007742.1_g000012 Rmu_sc0008148.1_g000071 Rmu_sc0009324.1_g000003 Rmu_sc0009324.1_g000004 Rmu_sc0009324.1_g000005 Rmu_sc0014424.1_g000003 Rmu_sc0019317.1_g000001 Rmu_sc0027639.1_g000001
rosa_roxburghii Rroxscaffold_1G00026360 Rroxscaffold_1G00026400 Rroxscaffold_1G00037560 Rroxscaffold_2G00077140 Rroxscaffold_2G00077180 Rroxscaffold_4G00315510 Rroxscaffold_4G00315520 Rroxscaffold_4G00324880 Rroxscaffold_6G00425980 Rroxscaffold_6G00425990 Rroxscaffold_7G00171610 Rroxscaffold_7G00178470 Rroxscaffold_7G00178490
rosa_rugosa Rorug01G0050000 Rorug01G0079800 Rorug01G0126000 Rorug01G0126400 Rorug02G0586700 Rorug02G0586700 Rorug02G0586800 Rorug02G0587000 Rorug02G0605600 Rorug02G0605700 Rorug05G0123000 Rorug05G0204600 Rorug05G0204800 Rorug05G0209100 Rorug05G0286600 Rorug05G0286800 Rorug05G0286900 Rorug06G0261200 Rorug07G0200800
rosa_samantha Rh1AG098700 Rh1BG054000 Rh1BG078400 Rh1BG078500 Rh1BG078600 Rh1BG115300 Rh1CG094700 Rh1CG138500 Rh2BG676800 Rh2BG677200 Rh2CG639900 Rh2CG640000 Rh2CG640100 Rh2CG640400 Rh2CG640500 Rh2DG690700 Rh2DG691000 Rh2DG691100 Rh3AG005200 Rh3BG004800 Rh3BG004900 Rh3DG005100 Rh3DG005300 Rh5AG290500 Rh5AG357000 Rh5AG357100 Rh5AG357300 Rh5BG296700 Rh5BG369300 Rh5CG326700 Rh5CG392000 Rh5DG310400 Rh6BG381100 Rh6DG373800
rosa_wichuraiana Rw0G010260 Rw1G007710 Rw1G009530 Rw1G011920 Rw2G004130 Rw2G054610 Rw3G000390 Rw5G026850 Rw5G026940 Rw5G033530 Rw5G033720 Rw5G033730 Rw5G033760 Rw6G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 110
AclWI GGATC 1 cut(s) 279
AcsI RAATTY 2 cut(s) 334, 341
AgsI TTSAA 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 321
AlwI GGATC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 334, 341
Asp700I GAANNNNTTC 3 cut(s) 95, 146, 246
AspLEI GCGC 1 cut(s) 112
BccI CCATC 1 cut(s) 113
BciVI GTATCC 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 321
BfmI CTRYAG 1 cut(s) 6
BfuI GTATCC 1 cut(s) 12
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmsI GCATC 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 361
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 175
Bsh1236I CGCG 1 cut(s) 110
BslFI GGGAC 1 cut(s) 87
BsmAI GTCTC 1 cut(s) 321
BsmFI GGGAC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 271
Bsp19I CCATGG 1 cut(s) 361
BspCNI CTCAG 1 cut(s) 192
BspFNI CGCG 1 cut(s) 110
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 1 cut(s) 279
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 1 cut(s) 271
BssT1I CCWWGG 1 cut(s) 361
Bst6I CTCTTC 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 179
BstDSI CCRYGG 1 cut(s) 361
BstF5I GGATG 1 cut(s) 208
BstFNI CGCG 1 cut(s) 110
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 1 cut(s) 274
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstSFI CTRYAG 1 cut(s) 6
BstUI CGCG 1 cut(s) 110
BsuI GTATCC 1 cut(s) 12
BtgI CCRYGG 1 cut(s) 361
BtgZI GCGATG 1 cut(s) 91
BtsCI GGATG 1 cut(s) 208
CfoI GCGC 1 cut(s) 112
CviAII CATG 1 cut(s) 362
CviJI RGCY 3 cut(s) 5, 197, 281
CviKI_1 RGCY 3 cut(s) 5, 197, 281
DdeI CTNAG 1 cut(s) 179
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 1 cut(s) 365
FaiI YATR 3 cut(s) 258, 284, 363
FalI AAGNNNNNCTT 2 cut(s) 43, 75
FaqI GGGAC 1 cut(s) 87
FatI CATG 1 cut(s) 361
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 6
GlaI GCGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 6
HhaI GCGC 1 cut(s) 112
Hin1II CATG 1 cut(s) 365
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HinfI GANTC 2 cut(s) 177, 186
Hpy188I TCNGA 1 cut(s) 152
Hpy188III TCNNGA 3 cut(s) 190, 251, 275
HpyAV CCTTC 3 cut(s) 147, 187, 364
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 2 cut(s) 8, 319
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 1 cut(s) 179
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 1 cut(s) 365
HspAI GCGC 1 cut(s) 110
Kzo9I GATC 1 cut(s) 271
LpnPI CCDG 4 cut(s) 203, 220, 236, 305
LweI GCATC 1 cut(s) 193
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 1 cut(s) 165
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 5 cut(s) 169, 248, 251, 337, 388
MluCI AATT 5 cut(s) 27, 246, 334, 341, 385
MlyI GAGTC 1 cut(s) 171
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 5 cut(s) 4, 153, 156, 271, 316
MroXI GAANNNNTTC 3 cut(s) 95, 146, 246
MseI TTAA 1 cut(s) 30
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 203
NcoI CCATGG 1 cut(s) 361
NdeII GATC 1 cut(s) 271
NlaIII CATG 1 cut(s) 365
PdmI GAANNNNTTC 3 cut(s) 95, 146, 246
PfeI GAWTC 1 cut(s) 186
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 171
PstI CTGCAG 1 cut(s) 10
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 271
SchI GAGTC 1 cut(s) 171
SetI ASST 3 cut(s) 25, 167, 225
SfaNI GCATC 1 cut(s) 193
SfcI CTRYAG 1 cut(s) 6
Sse9I AATT 5 cut(s) 27, 246, 334, 341, 385
SspI AATATT 1 cut(s) 145
StyI CCWWGG 1 cut(s) 361
TaiI ACGT 1 cut(s) 25
TasI AATT 5 cut(s) 27, 246, 334, 341, 385
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 273
XapI RAATTY 2 cut(s) 334, 341
XmnI GAANNNNTTC 3 cut(s) 95, 146, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.